chr9 : 93,364,969 93,366,461
1,492 bp 123 TFs 7 linked genes
This 1.5 kb open chromatin element is linked to 7 target genes and is bound by 123 transcription factors.
Linked Genes
7 genes
Gene Expression Dist. to TSS Distance Link type
ENSG00000290685 19.3 kb Distal Multiome
FAM120A 86.1 kb Distal Multiome
FAM120AOS 87.8 kb Distal Multiome
WNK2 181.6 kb Distal Multiome
PHF2 211.0 kb Distal Multiome
NINJ1 231.5 kb Distal Multiome
CARD19 269.5 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:93,359,969 – 93,371,461
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
123 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP WTC11 ENCFF556XTF 445 bp overlap
AR 4 datasets
ChIP LNCaP GSE80256.AR.LNCaP 283 bp overlap
ChIP LNCaP_GFP_Ethanol GSE128883.AR.LNCaP_GFP_Ethanol 187 bp overlap
ChIP WTC11 ENCFF267GQJ 224 bp overlap
ChIP WTC11 ENCFF267GQJ 241 bp overlap
ATF2 2 datasets
ChIP WA01 ENCSR000BQU.ATF2.WA01 1041 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 124 bp overlap
ATOH7 1 dataset
Motif ES_0h ES_0h-ATOH7_MA1468.1 10 bp overlap
Atoh1 1 dataset
Motif ES_0h ES_0h-Atoh1_MA1467.3 7 bp overlap
BCOR 1 dataset
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 240 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 315 bp overlap
BRD2 2 datasets
ChIP HUVEC-C GSE60171.BRD2.HUVEC-C 195 bp overlap
ChIP HUVEC-C GSE60171.BRD2.HUVEC-C 195 bp overlap
BRD3 1 dataset
ChIP MV4-11_IBET151_500nM GSE120715.BRD3.MV4-11_IBET151_500nM 134 bp overlap
BRD4 3 datasets
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 296 bp overlap
ChIP HUVEC-C GSE60171.BRD4.HUVEC-C 255 bp overlap
ChIP hESC GSE33281.BRD4.hESC 99 bp overlap
CBFB 1 dataset
ChIP WTC11 ENCFF113HIY 501 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 100 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 139 bp overlap
CRY1 1 dataset
ChIP U2OS GSE44236.CRY1.U2OS 201 bp overlap
CTBP1 1 dataset
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 704 bp overlap
CTCF 6 datasets
Motif ES_0h ES_0h-CTCF_MA0139.2 15 bp overlap
Motif ES_0h ES_0h-CTCF_MA1929.2 31 bp overlap
ChIP GSC23 GSE139416.CTCF.GSC23 234 bp overlap
ChIP HepG2 ENCFF757EKU 351 bp overlap
ChIP endodermal cell ENCFF471YCZ 461 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 121 bp overlap
E2F1 1 dataset
ChIP WTC11 ENCFF994SXO 417 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 447 bp overlap
ERG 1 dataset
ChIP SKNO-1 GSE23730.ERG.SKNO-1 365 bp overlap
ESR1 7 datasets
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 294 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 214 bp overlap
ChIP MCF-7 GSE68356.ESR1.MCF-7 200 bp overlap
ChIP MCF-7_E2 ERP000901.ESR1.MCF-7_E2 135 bp overlap
ChIP MCF-7_Veh GSE67295.ESR1.MCF-7_Veh 200 bp overlap
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 335 bp overlap
ChIP MCF-7_estradiol-DHT_45min GSE99626.ESR1.MCF-7_estradiol-DHT_45min 243 bp overlap
ESRRA 2 datasets
ChIP WTC11 ENCFF591YCA 425 bp overlap
ChIP WTC11 ENCFF591YCA 425 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 437 bp overlap
EZH1 2 datasets
ChIP ProEs GSE59087.EZH1.ProEs 130 bp overlap
ChIP ProEs_SHCTR GSE59087.EZH1.ProEs_SHCTR 139 bp overlap
EZH2 1 dataset
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 149 bp overlap
FERD3L 1 dataset
Motif ES_0h ES_0h-FERD3L_MA1485.1 14 bp overlap
FEZF2 1 dataset
Motif ES_0h ES_0h-FEZF2_MA2341.1 8 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 318 bp overlap
ChIP DE DE-FOXA2-2 388 bp overlap
FOXB1 1 dataset
Motif ES_0h ES_0h-FOXB1_MA0845.1 11 bp overlap
FOXC1 1 dataset
Motif ES_0h ES_0h-FOXC1_MA0032.2 11 bp overlap
FOXH1 1 dataset
Motif ES_0h ES_0h-FOXH1_MA0479.2 8 bp overlap
FOXK1 1 dataset
ChIP WTC11 ENCFF875IGU 391 bp overlap
FOXO6 1 dataset
Motif ES_0h ES_0h-FOXO6_MA0849.1 7 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 377 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-2 399 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 188 bp overlap
GATA6 3 datasets
ChIP AGS GSE51705.GATA6.AGS 243 bp overlap
ChIP DE DE-GATA6-2 402 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 228 bp overlap
GSPT2 1 dataset
ChIP HEK293T GSE35197.GSPT2.HEK293T 198 bp overlap
HAND2 2 datasets
Motif ES_0h ES_0h-HAND2_MA1638.2 6 bp overlap
Motif ES_0h ES_0h-HAND2_MA1638.2 6 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 192 bp overlap
Hnf1A 1 dataset
Motif ES_0h ES_0h-Hnf1A_MA1991.2 10 bp overlap
IRF8 1 dataset
ChIP THP-1 GSE123872.IRF8.THP-1 413 bp overlap
JUND 1 dataset
ChIP H1 ENCFF468JZD 231 bp overlap
KAT7 2 datasets
ChIP WTC11 ENCFF581TPB 511 bp overlap
ChIP WTC11 ENCFF581TPB 511 bp overlap
KDM1A 1 dataset
ChIP K-562 GSE117944.KDM1A.K-562 261 bp overlap
KDM4C 1 dataset
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 213 bp overlap
KLF11 1 dataset
Motif ES_0h ES_0h-KLF11_MA1512.2 10 bp overlap
KLF9 1 dataset
Motif ES_0h ES_0h-KLF9_MA1107.3 11 bp overlap
MAF1 1 dataset
ChIP THP-1_macrophage_PMA GSE96800.MAF1.THP-1_macrophage_PMA 163 bp overlap
MAX 3 datasets
ChIP H1 ENCFF914VQY 155 bp overlap
ChIP MCF-7 ENCSR000BUL.MAX.MCF-7 104 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EEZ.MAX.endothelial_umbilical-vein 110 bp overlap
MEIS1 2 datasets
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MEIS2 1 dataset
Motif ES_0h ES_0h-MEIS2_MA0774.1 8 bp overlap
MEIS3 1 dataset
Motif ES_0h ES_0h-MEIS3_MA0775.2 7 bp overlap
MXI1 1 dataset
Motif ES_0h ES_0h-MXI1_MA1108.3 6 bp overlap
MYC 1 dataset
ChIP P493-6_MST-312 GSE77061.MYC.P493-6_MST-312 136 bp overlap
NANOG 1 dataset
ChIP hESC GSE18292.NANOG.hESC 93 bp overlap
NCOA2 1 dataset
ChIP MCF-7 ERP000901.NCOA2.MCF-7 163 bp overlap
NCOA3 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA3.MCF-7_E2 108 bp overlap
NCOR1 1 dataset
ChIP HEK293T_SICTR GSE35197.NCOR1.HEK293T_SICTR 254 bp overlap
NEUROD1 2 datasets
Motif ES_0h ES_0h-NEUROD1_MA1109.2 8 bp overlap
Motif ES_0h ES_0h-NEUROD1_MA1109.2 8 bp overlap
NFATC4 1 dataset
ChIP WTC11 ENCFF744MZI 271 bp overlap
NFIA 1 dataset
Motif ES_0h ES_0h-NFIA_MA0670.2 6 bp overlap
NFIB 1 dataset
Motif ES_0h ES_0h-NFIB_MA1643.2 17 bp overlap
NFIC 1 dataset
Motif ES_0h ES_0h-NFIC_MA0161.3 7 bp overlap
NFIX 1 dataset
Motif ES_0h ES_0h-NFIX_MA0671.2 6 bp overlap
NIPBL 1 dataset
ChIP WA09 GSE105028.NIPBL.WA09 928 bp overlap
Neurod2 2 datasets
Motif ES_0h ES_0h-Neurod2_MA0668.3 8 bp overlap
Motif ES_0h ES_0h-Neurod2_MA0668.3 8 bp overlap
OSR1 1 dataset
Motif ES_0h ES_0h-OSR1_MA1542.2 8 bp overlap
OSR2 2 datasets
Motif ES_0h ES_0h-OSR2_MA1646.2 8 bp overlap
Motif ES_0h ES_0h-OSR2_MA1646.2 8 bp overlap
PBX1 1 dataset
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 268 bp overlap
PGR 1 dataset
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 225 bp overlap
POLR2A 5 datasets
ChIP GM23338 ENCFF450WCS 1362 bp overlap
ChIP H1 ENCFF566JSR 341 bp overlap
ChIP H1 ENCFF770YBQ 471 bp overlap
ChIP H1 ENCFF770YBQ 125 bp overlap
ChIP H1 ENCFF833NJP 339 bp overlap
POU5F1 3 datasets
ChIP BG03 GSE21614.POU5F1.BG03 249 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 522 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 861 bp overlap
PRDM15 1 dataset
ChIP WTC11 ENCFF108TMF 401 bp overlap
Prdm5 1 dataset
Motif ES_0h ES_0h-Prdm5_MA1999.2 11 bp overlap
Ptf1A 2 datasets
Motif ES_0h ES_0h-Ptf1A_MA1618.2 9 bp overlap
Motif ES_0h ES_0h-Ptf1A_MA1618.2 9 bp overlap
RAD21 2 datasets
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 127 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 255 bp overlap
RBAK 1 dataset
ChIP HepG2 ENCFF712MSJ 385 bp overlap
RBPJ 2 datasets
Motif ES_0h ES_0h-RBPJ_MA1116.2 6 bp overlap
Motif ES_0h ES_0h-RBPJ_MA1116.2 6 bp overlap
REST 1 dataset
ChIP hiPSC_IB12 GSE106870.REST.hiPSC_IB12 468 bp overlap
RORB 1 dataset
Motif ES_0h ES_0h-RORB_MA1150.2 10 bp overlap
RORC 1 dataset
Motif ES_0h ES_0h-RORC_MA1151.2 10 bp overlap
SCRT1 1 dataset
Motif ES_0h ES_0h-SCRT1_MA0743.3 10 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 187 bp overlap
SMARCA4 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 217 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 611 bp overlap
SPI1 3 datasets
ChIP GM12878 ENCFF134LCP 297 bp overlap
ChIP GM12891 ENCFF563IUT 241 bp overlap
ChIP OCI-Ly7 GSE69558.SPI1.OCI-Ly7 471 bp overlap
SUZ12 1 dataset
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 124 bp overlap
TAF7 1 dataset
ChIP H1 ENCFF061XZZ 337 bp overlap
TBL1X 2 datasets
ChIP HEK293T GSE35197.TBL1X.HEK293T 189 bp overlap
ChIP HEK293T GSE35197.TBL1X.HEK293T 190 bp overlap
TCF3 2 datasets
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 311 bp overlap
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 583 bp overlap
TCF4 1 dataset
ChIP CAL-1 GSE76147.TCF4.CAL-1 137 bp overlap
TCF7L1 1 dataset
Motif ES_0h ES_0h-TCF7L1_MA1421.1 12 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 256 bp overlap
THRB 1 dataset
Motif ES_0h ES_0h-THRB_MA1576.2 18 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 445 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 411 bp overlap
YY1AP1 2 datasets
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 357 bp overlap
ChIP PC-9_2DF GSE131687.YY1AP1.PC-9_2DF 283 bp overlap
ZBTB24 1 dataset
Motif ES_0h ES_0h-ZBTB24_MA2330.1 10 bp overlap
ZFX 1 dataset
ChIP HepG2 ENCFF016NZF 691 bp overlap
ZKSCAN8 1 dataset
ChIP WTC11 ENCFF666HNJ 345 bp overlap
ZMAT4 1 dataset
ChIP WTC11 ENCFF608UXZ 97 bp overlap
ZNF138 1 dataset
ChIP WTC11 ENCFF800FUU 405 bp overlap
ZNF143 1 dataset
ChIP WA09 GSE105028.ZNF143.WA09 611 bp overlap
ZNF184 1 dataset
ChIP WTC11 ENCFF352POG 497 bp overlap
ZNF213 1 dataset
Motif ES_0h ES_0h-ZNF213_MA2121.1 12 bp overlap
ZNF232 1 dataset
ChIP WTC11 ENCFF901BGD 461 bp overlap
ZNF416 1 dataset
ChIP WTC11 ENCFF407TAZ 271 bp overlap
ZNF425 2 datasets
ChIP WTC11 ENCFF359IXT 301 bp overlap
ChIP WTC11 ENCFF359IXT 301 bp overlap
ZNF528 1 dataset
Motif ES_0h ES_0h-ZNF528_MA1597.1 17 bp overlap
ZNF671 1 dataset
ChIP WTC11 ENCFF053HBV 82 bp overlap
ZNF687 1 dataset
ChIP HepG2 ENCFF653WIX 734 bp overlap
ZNF708 1 dataset
Motif ES_0h ES_0h-ZNF708_MA1730.2 9 bp overlap
Zfp809 1 dataset
Motif ES_0h ES_0h-Zfp809_MA2125.1 9 bp overlap
Zic2 2 datasets
Motif ES_0h ES_0h-Zic2_MA1629.2 9 bp overlap
Motif ES_0h ES_0h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif ES_0h ES_0h-Zic3_MA0697.3 7 bp overlap