chr1:155,196,127–155,196,592

chr1 : 155,196,127 – 155,196,592

465 bp 97 TFs 21 linked genes

This 465 bp open chromatin element is linked to 21 target genes and is bound by 97 transcription factors.

Linked Genes

21 genes

Gene	Expression	Dist. to TSS	Distance	Link type
MIR92B		951 bp	At TSS	Proximity
THBS3-AS1		1.1 kb	Proximal	Proximity
MUC1		3.2 kb	Proximal	Proximity
MTX1		12.8 kb	Distal	Multiome
TRIM46		22.6 kb	Distal	Multiome
KRTCAP2		23.1 kb	Distal	Multiome
DPM3		55.9 kb	Distal	Multiome
ENTREP3		59.1 kb	Distal	Multiome
SLC50A1		60.5 kb	Distal	Multiome
SCAMP3		66.0 kb	Distal	Multiome
CLK2		77.1 kb	Distal	Multiome
FDPS		112.5 kb	Distal	Multiome
RUSC1		124.5 kb	Distal	Multiome
EFNA4		132.7 kb	Distal	Multiome
ADAM15		145.1 kb	Distal	Multiome
FLAD1		213.0 kb	Distal	Multiome
CKS1B		221.7 kb	Distal	Multiome
SHC1		222.0 kb	Distal	Multiome
PYGO2		234.6 kb	Distal	Multiome
PBXIP1		240.3 kb	Distal	Multiome
PMVK		259.7 kb	Distal	Multiome

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

97 transcription factors

ChIP breast_tumor_Male_20 GSE104399.AR.breast_tumor_Male_20 64 bp overlap

ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 198 bp overlap

ARID1A 1 dataset

ChIP HAP1 GSE108387.ARID1A.HAP1 284 bp overlap

ARID2 2 datasets

ChIP Aska-SS GSE108025.ARID2.Aska-SS 254 bp overlap

ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 253 bp overlap

ARID4B 1 dataset

ChIP WTC11 ENCFF441HDK 210 bp overlap

ASH2L 3 datasets

ChIP H1 ENCFF399KAM 419 bp overlap

ChIP H1 ENCFF399KAM 465 bp overlap

ChIP WA01 ENCSR850KIP.ASH2L.WA01 465 bp overlap

ATF2 2 datasets

ChIP H1 ENCFF295GZO 152 bp overlap

ChIP H1 ENCFF295GZO 210 bp overlap

BCL11A 1 dataset

ChIP WA01 ENCSR000BIP.BCL11A.WA01 107 bp overlap

BCOR 4 datasets

ChIP WA01 GSE104690.BCOR.WA01 431 bp overlap

ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 219 bp overlap

ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 191 bp overlap

ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 314 bp overlap

ChIP HUES-64 GSE104059.BRD1.HUES-64 465 bp overlap

BRD4 4 datasets

ChIP CLL_patient3 GSE109411.BRD4.CLL_patient3 316 bp overlap

ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 370 bp overlap

ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 160 bp overlap

ChIP hESC GSE33281.BRD4.hESC 104 bp overlap

CBFA2T2 1 dataset

ChIP NCCIT GSE71675.CBFA2T2.NCCIT 240 bp overlap

ChIP HEK293T GSE34774.CBX2.HEK293T 359 bp overlap

ChIP hMSC GSE117084.CBX4.hMSC 171 bp overlap

CHD1 3 datasets

ChIP H1 ENCFF998XEK 92 bp overlap

ChIP WA01 ENCSR000AQK.CHD1.WA01 175 bp overlap

ChIP WA01 ENCSR000AQK.CHD1.WA01 101 bp overlap

CHD2 2 datasets

ChIP H1 ENCFF991MKH 305 bp overlap

ChIP WA01 ENCSR000EBT.CHD2.WA01 150 bp overlap

ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 407 bp overlap

CREB1 3 datasets

ChIP GM23338 ENCFF432ZEW 305 bp overlap

ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 354 bp overlap

ChIP WA01 ENCSR000BSN.CREB1.WA01 351 bp overlap

CTBP2 1 dataset

ChIP WA01 ENCSR000EUO.CTBP2.WA01 378 bp overlap

ChIP WTC11 ENCFF692RZJ 375 bp overlap

EP300 3 datasets

ChIP H1 ENCFF927IYK 297 bp overlap

ChIP WA01 ENCSR000AUQ.EP300.WA01 170 bp overlap

ChIP WA01 ENCSR000BKK.EP300.WA01 377 bp overlap

ChIP WTC11 ENCFF011YUL 94 bp overlap

ChIP breast_tumor_Male_21 GSE104399.ESR1.breast_tumor_Male_21 235 bp overlap

ETS1 3 datasets

ChIP GM23338 ENCFF701IZH 377 bp overlap

ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 465 bp overlap

ChIP hESC ENCSR534VHI.ETS1.hESC 305 bp overlap

EZH2 2 datasets

ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 311 bp overlap

ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 127 bp overlap

FOXP1 1 dataset

ChIP H9 GSE31006.FOXP1.H9 302 bp overlap

GLIS2 1 dataset

ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 298 bp overlap

GLIS3 1 dataset

ChIP H9_plus GSE109562.GLIS3.H9_plus 427 bp overlap

HDAC2 5 datasets

ChIP H1 ENCFF353UJQ 389 bp overlap

ChIP H1 ENCFF939VKA 209 bp overlap

ChIP WA01 ENCSR000AVB.HDAC2.WA01 241 bp overlap

ChIP WA01 ENCSR000BNR.HDAC2.WA01 153 bp overlap

ChIP WA01 ENCSR000AVB.HDAC2.WA01 124 bp overlap

IKZF3 1 dataset

ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 161 bp overlap

JUN 10 datasets

ChIP DE_D1 S08-DE-d1-JUN-exp1 267 bp overlap

ChIP DE_D1 S40-DE-d1-JUN-exp2 319 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 465 bp overlap

ChIP DE_D2 S54-DE-d2-JUN-exp2 318 bp overlap

ChIP ESC S24-ESC-d0-JUN-exp1 465 bp overlap

ChIP ESC S34-ESC-d0-JUN-exp2 465 bp overlap

ChIP H1 ENCFF621PNP 241 bp overlap

ChIP HUES-8 GSE109524.JUN.HUES-8 465 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 344 bp overlap

ChIP Karpas-299 GSE151413.JUN.Karpas-299 193 bp overlap

JUND 4 datasets

ChIP H1 ENCFF010YXS 311 bp overlap

ChIP H1 ENCFF468JZD 231 bp overlap

ChIP WA01 ENCSR000BKP.JUND.WA01 444 bp overlap

ChIP WA01 ENCSR000EBZ.JUND.WA01 233 bp overlap

ChIP WTC11 ENCFF581TPB 382 bp overlap

ChIP GBM1A GSE62211.KLF9.GBM1A 383 bp overlap

KMT2D 1 dataset

ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4 370 bp overlap

ChIP hESC GSE64758.LEF1.hESC 299 bp overlap

ChIP H1 ENCFF601FOM 325 bp overlap

ChIP WA01 ENCSR000EUP.MAX.WA01 265 bp overlap

ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 239 bp overlap

ChIP H1 ENCFF963FZS 337 bp overlap

NANOG 4 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 465 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 168 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 306 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 279 bp overlap

NELFE 1 dataset

ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 162 bp overlap

NEUROD1 2 datasets

ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 465 bp overlap

ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 399 bp overlap

NIPBL 4 datasets

ChIP hESC GSE64758.NIPBL.hESC 279 bp overlap

ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 236 bp overlap

ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 256 bp overlap

ChIP hESC_activin GSE64758.NIPBL.hESC_activin 281 bp overlap

NR3C1 1 dataset

ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 327 bp overlap

PCGF1 1 dataset

ChIP WA01 GSE104690.PCGF1.WA01 432 bp overlap

PCGF2 1 dataset

ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 310 bp overlap

PHF8 2 datasets

ChIP H1 ENCFF427UFV 443 bp overlap

ChIP WA01 ENCSR000ATK.PHF8.WA01 111 bp overlap

POLR2A 6 datasets

ChIP GM23338 ENCFF450WCS 313 bp overlap

ChIP H1 ENCFF566JSR 465 bp overlap

ChIP H1 ENCFF833NJP 465 bp overlap

ChIP SK-N-MC ENCFF088IVG 238 bp overlap

ChIP SK-N-SH ENCFF683PFH 74 bp overlap

ChIP upper lobe of left lung ENCFF504HCM 206 bp overlap

POU2F2 1 dataset

ChIP HNPC_UNDIF GSE74814.POU2F2.HNPC_UNDIF 165 bp overlap

POU4F2 1 dataset

ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 196 bp overlap

POU5F1 16 datasets

ChIP BG03 GSE21614.POU5F1.BG03 313 bp overlap

ChIP DE_D1 DED1-OCT4_Batch_II 305 bp overlap

ChIP GM23338 ENCFF333SNB 311 bp overlap

ChIP H1 ENCFF698ZAP 205 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 465 bp overlap

ChIP NCCIT GSE36134.POU5F1.NCCIT 465 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 465 bp overlap

ChIP OSK GSE81899.POU5F1.OSK 184 bp overlap

ChIP SKM-1 GSE93706.POU5F1.SKM-1 344 bp overlap

ChIP WA01 ENCSR000BMU.POU5F1.WA01 216 bp overlap

ChIP WA09 GSE105028.POU5F1.WA09 277 bp overlap

ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 226 bp overlap

ChIP hESC ENCSR264RJX.POU5F1.hESC 315 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 465 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 303 bp overlap

ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 407 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 294 bp overlap

PRDM10 1 dataset

ChIP HEK293 ENCFF145WQQ 395 bp overlap

PRDM14 1 dataset

ChIP NCCIT GSE71675.PRDM14.NCCIT 372 bp overlap

RAD21 2 datasets

ChIP HAP1 GSE152721.RAD21.HAP1 277 bp overlap

ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 333 bp overlap

RARA 2 datasets

ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 191 bp overlap

ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 281 bp overlap

RBBP5 2 datasets

ChIP H1 ENCFF905HFL 465 bp overlap

ChIP WA01 ENCSR000AQC.RBBP5.WA01 218 bp overlap

RBFOX2 2 datasets

ChIP K-562 GSE120104.RBFOX2.K-562 333 bp overlap

ChIP K-562 ENCSR822LBD.RBFOX2.K-562 281 bp overlap

ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 465 bp overlap

ChIP HUVEC-C_TNF-60min GSE121890.RELA.HUVEC-C_TNF-60min 140 bp overlap

ChIP WA01 ENCSR000BHM.REST.WA01 140 bp overlap

RFX1 9 datasets

ChIP K-562 ENCSR968GIB.RFX1.K-562 429 bp overlap

ChIP K-562 ENCSR041AXL.RFX1.K-562 408 bp overlap

ChIP K562 ENCFF421AVO 321 bp overlap

ChIP K562 ENCFF809XVG 225 bp overlap

ChIP K562 ENCFF809XVG 255 bp overlap

ChIP MCF-7 ENCFF782EZS 160 bp overlap

ChIP MCF-7 ENCFF973QAD 400 bp overlap

ChIP MCF-7 ENCSR066TET.RFX1.MCF-7 465 bp overlap

ChIP MCF-7 ENCSR788XNX.RFX1.MCF-7 374 bp overlap

RPA2_phospho 2 datasets

ChIP HeLa GSE108172.RPA2_phospho.HeLa 142 bp overlap

ChIP HeLa_shASF GSE108172.RPA2_phospho.HeLa_shASF 225 bp overlap

ChIP WA01 ENCSR000BJW.RXRA.WA01 238 bp overlap

SAP30 1 dataset

ChIP WA01 ENCSR000ATR.SAP30.WA01 384 bp overlap

SIN3A 6 datasets

ChIP H1 ENCFF042ZSL 465 bp overlap

ChIP H1 ENCFF896IJG 301 bp overlap

ChIP WA01 ENCSR000EBO.SIN3A.WA01 465 bp overlap

ChIP WA01 ENCSR000BIS.SIN3A.WA01 448 bp overlap

ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 235 bp overlap

ChIP hiPSC_IID12 GSE106870.SIN3A.hiPSC_IID12 233 bp overlap

SMAD2-3 3 datasets

ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 458 bp overlap

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 439 bp overlap

ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 411 bp overlap

SMAD2_3 1 dataset

ChIP ESC S33-ESC-d0-SMAD2_3-exp2 409 bp overlap

SMAD3 4 datasets

ChIP BG03 GSE21614.SMAD3.BG03 324 bp overlap

ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 301 bp overlap

ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 236 bp overlap

ChIP hESC GSE29422.SMAD3.hESC 204 bp overlap

SMARCA4 5 datasets

ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 392 bp overlap

ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 384 bp overlap

ChIP NSC GSE125033.SMARCA4.NSC 465 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 465 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 465 bp overlap

SMARCB1 2 datasets

ChIP hiPSC GSE124903.SMARCB1.hiPSC 431 bp overlap

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 394 bp overlap

SMARCC1 4 datasets

ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 207 bp overlap

ChIP ESC S25-ESC-d0-BAF155-exp1 465 bp overlap

ChIP hiPSC GSE124903.SMARCC1.hiPSC 436 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 449 bp overlap

SOX2 14 datasets

ChIP H9 GSE46837.SOX2.H9 389 bp overlap

ChIP HNSC GSE69479.SOX2.HNSC 450 bp overlap

ChIP NPC GSE122631.SOX2.NPC 242 bp overlap

ChIP OSK GSE81899.SOX2.OSK 216 bp overlap

ChIP OSKM GSE81899.SOX2.OSKM 161 bp overlap

ChIP RENVM GSE49404.SOX2.RENVM 271 bp overlap

ChIP RENVM_SHSOX2 GSE49404.SOX2.RENVM_SHSOX2 190 bp overlap

ChIP hESC GSE69479.SOX2.hESC 332 bp overlap

ChIP hESC GSE18292.SOX2.hESC 98 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 412 bp overlap

ChIP hiPSC GSE67282.SOX2.hiPSC 382 bp overlap

ChIP hiPSC_INHI GSE67282.SOX2.hiPSC_INHI 340 bp overlap

ChIP hiPSC_KDP53 GSE67282.SOX2.hiPSC_KDP53 374 bp overlap

ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 368 bp overlap

ChIP NPC GSE122631.SOX3.NPC 318 bp overlap

ChIP H1 ENCFF263FUH 114 bp overlap

ChIP WA01 ENCSR000BIR.SP1.WA01 451 bp overlap

ChIP H1 ENCFF473YOB 465 bp overlap

ChIP WA01 ENCSR000BQV.SP4.WA01 392 bp overlap

ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 236 bp overlap

SUPT5H 1 dataset

ChIP U2OS_siCtrl GSE115365.SUPT5H.U2OS_siCtrl 106 bp overlap

SUZ12 1 dataset

ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 82 bp overlap

ChIP WA01 ENCSR000BHO.TAF1.WA01 465 bp overlap

ChIP WA01 ENCSR000BLU.TAF7.WA01 186 bp overlap

TBP 10 datasets

ChIP H1 ENCFF859IIO 268 bp overlap

ChIP H1 ENCFF859IIO 281 bp overlap

ChIP H1 ENCFF859IIO 64 bp overlap

ChIP WA01 ENCSR000ECB.TBP.WA01 217 bp overlap

ChIP WA01 ENCSR000ECB.TBP.WA01 157 bp overlap

ChIP hESC GSE122298.TBP.hESC 167 bp overlap

ChIP hESC GSE122298.TBP.hESC 137 bp overlap

ChIP hESC_10h GSE122298.TBP.hESC_10h 352 bp overlap

ChIP hESC_2h GSE122298.TBP.hESC_2h 465 bp overlap

ChIP hESC_8h GSE122298.TBP.hESC_8h 207 bp overlap

TCF12 2 datasets

ChIP H1 ENCFF203EBH 251 bp overlap

ChIP WA01 ENCSR000BIT.TCF12.WA01 177 bp overlap

ChIP NPC GSE154479.TCF3.NPC 235 bp overlap

TEAD1 2 datasets

ChIP WTC11 ENCFF502QUV 405 bp overlap

ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 196 bp overlap

TEAD4 7 datasets

ChIP BJ_fibroblast GSE114367.TEAD4.BJ_fibroblast 162 bp overlap

ChIP BJ_fibroblast_CD13-neg GSE114367.TEAD4.BJ_fibroblast_CD13-neg 308 bp overlap

ChIP BJ_fibroblast_CD13-pos GSE114367.TEAD4.BJ_fibroblast_CD13-pos 218 bp overlap

ChIP ESC S26-ESC-d0-TEAD4-exp1 465 bp overlap

ChIP H1 ENCFF778PAX 205 bp overlap

ChIP WTC11 ENCFF114TZS 341 bp overlap

ChIP hESC GSE99202.TEAD4.hESC 309 bp overlap

ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 410 bp overlap

ChIP WA01 GSE99202.YAP1.WA01 357 bp overlap

ChIP Huh-7 GSE97411.YY1.Huh-7 324 bp overlap

ChIP WA01 ENCSR000BKD.YY1.WA01 465 bp overlap

ZBTB48 1 dataset

ChIP HEK293 ENCFF809BPK 74 bp overlap

ZFP91 1 dataset

ChIP K562 ENCFF501CDP 349 bp overlap

ZNF143 1 dataset

ChIP WTC11 ENCFF249JUK 262 bp overlap

ZNF184 1 dataset

ChIP WTC11 ENCFF352POG 335 bp overlap

ZNF207 1 dataset

ChIP WA09 GSE118632.ZNF207.WA09 345 bp overlap

ZNF28 1 dataset

ChIP HEK293T GSE78099.ZNF28.HEK293T 309 bp overlap

ZNF281 1 dataset

ChIP WTC11 ENCFF551GAV 377 bp overlap

ChIP K-562 ENCSR195QFV.ZNF3.K-562 82 bp overlap

ZNF398 2 datasets

ChIP BG01V GSE133630.ZNF398.BG01V 292 bp overlap

ChIP H9 GSE133630.ZNF398.H9 242 bp overlap