chr5 : 52,801,368 52,801,718
350 bp 115 TFs 1 linked gene
This 350 bp open chromatin element is linked to PELO-AS1 and is bound by 115 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
PELO-AS1 1.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:52,796,368 – 52,806,718
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
115 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP HeLa_DOX_EGF GSE40632.AFF4.HeLa_DOX_EGF 149 bp overlap
AR 1 dataset
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 194 bp overlap
ARID2 4 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 350 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 350 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-T910M 322 bp overlap
ChIP Hep-G2 GSE69566.ARID2.Hep-G2 228 bp overlap
ARID3A 1 dataset
ChIP HepG2 ENCFF341DES 336 bp overlap
ASH2L 2 datasets
ChIP HepG2 ENCFF207QHL 350 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 324 bp overlap
BRD1 2 datasets
ChIP HUES-64 GSE104059.BRD1.HUES-64 323 bp overlap
ChIP RKO GSE47190.BRD1.RKO 350 bp overlap
BRD2 1 dataset
ChIP K-562_DMSO GSE138084.BRD2.K-562_DMSO 336 bp overlap
BRD3 3 datasets
ChIP HEK293T GSE39579.BRD3.HEK293T 180 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD3.K-562_DMSO-IFNG 222 bp overlap
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD3.K-562_iBET-BD1-IFNG 154 bp overlap
BRD4 8 datasets
ChIP HEK293T GSE39579.BRD4.HEK293T 350 bp overlap
ChIP HT29 GSE73319.BRD4.HT29 300 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 213 bp overlap
ChIP KOPT-K1 GSE54379.BRD4.KOPT-K1 185 bp overlap
ChIP LNCaP-clone-FGC_DHT-ABBV-075 GSE118247.BRD4.LNCaP-clone-FGC_DHT-ABBV-075 241 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 95 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 350 bp overlap
ChIP SUM159PT_KO GSE131097.BRD4.SUM159PT_KO 242 bp overlap
BRD7 1 dataset
ChIP SUM159PT_DMSO GSE131097.BRD7.SUM159PT_DMSO 207 bp overlap
CDK8 2 datasets
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 122 bp overlap
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 57 bp overlap
CHD1 3 datasets
ChIP HeLa-S3 ENCSR392EAA.CHD1.HeLa-S3 172 bp overlap
ChIP IMR-90 ENCSR000EFC.CHD1.IMR-90 145 bp overlap
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 305 bp overlap
CSRNP3 1 dataset
ChIP SK-N-SH ENCFF710BXD 57 bp overlap
CTBP1 2 datasets
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 214 bp overlap
ChIP K562 ENCFF403WPG 308 bp overlap
CTCF 4 datasets
ChIP DND41 ENCSR000AQU.CTCF.DND41 118 bp overlap
ChIP SUM159 GSE46055.CTCF.SUM159 88 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF631JNO 51 bp overlap
ChIP spleen ENCFF954DQD 82 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 251 bp overlap
DMAP1 1 dataset
ChIP Hep-G2 ENCSR670YPQ.DMAP1.Hep-G2 147 bp overlap
DRAP1 1 dataset
ChIP Hep-G2 ENCSR765MKZ.DRAP1.Hep-G2 215 bp overlap
ELF3 1 dataset
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 313 bp overlap
ETS1 1 dataset
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 128 bp overlap
EZH2 1 dataset
ChIP WA01 ENCSR000ASY.EZH2.WA01 230 bp overlap
FOS 1 dataset
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 61 bp overlap
FOXA1 1 dataset
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 116 bp overlap
FOXK1 1 dataset
ChIP Hep-G2 ENCSR603BJQ.FOXK1.Hep-G2 129 bp overlap
FOXL2 2 datasets
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 249 bp overlap
ChIP HGrC1_C134W-TGF_parental GSE138496.FOXL2.HGrC1_C134W-TGF_parental 306 bp overlap
HDAC1 3 datasets
ChIP MCF-7_ARID1A-KO_4-OHT_clone14 GSE123284.HDAC1.MCF-7_ARID1A-KO_4-OHT_clone14 264 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 350 bp overlap
ChIP NB4 GSE126720.HDAC1.NB4 223 bp overlap
HIF1A 2 datasets
ChIP U2OS_DMOG GSE85096.HIF1A.U2OS_DMOG 252 bp overlap
ChIP U2OS_DMSO GSE85096.HIF1A.U2OS_DMSO 206 bp overlap
HNF1B 1 dataset
ChIP Hep-G2 ENCSR127XTZ.HNF1B.Hep-G2 283 bp overlap
HOXB13 2 datasets
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 109 bp overlap
ChIP prostate_P5_T GSE130408.HOXB13.prostate_P5_T 145 bp overlap
INO80 2 datasets
ChIP Hep-G2 GSE97411.INO80.Hep-G2 213 bp overlap
ChIP Huh-7 GSE97411.INO80.Huh-7 350 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 221 bp overlap
IRF2 1 dataset
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 181 bp overlap
JUN 1 dataset
ChIP Karpas-299 GSE151413.JUN.Karpas-299 296 bp overlap
JUNB 1 dataset
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 103 bp overlap
KDM1A 2 datasets
ChIP K-562 GSE117944.KDM1A.K-562 259 bp overlap
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 208 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 255 bp overlap
KMT2A 5 datasets
ChIP CCRF-CEM GSE83671.KMT2A.CCRF-CEM 280 bp overlap
ChIP HEK293T_C-term_C104 GSE90762.KMT2A.HEK293T_C-term_C104 104 bp overlap
ChIP HEK293T_C-term_shCtrl GSE90762.KMT2A.HEK293T_C-term_shCtrl 180 bp overlap
ChIP HEK293T_N-term_shCtrl GSE90762.KMT2A.HEK293T_N-term_shCtrl 290 bp overlap
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 296 bp overlap
LMO2 1 dataset
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 157 bp overlap
MAX 4 datasets
ChIP HeLa-S3 ENCFF398RFF 264 bp overlap
ChIP HeLa-S3 ENCSR000ECN.MAX.HeLa-S3 116 bp overlap
ChIP HeLa-S3 ENCSR000EZF.MAX.HeLa-S3 126 bp overlap
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 234 bp overlap
MCRS1 1 dataset
ChIP Huh-7 GSE97411.MCRS1.Huh-7 268 bp overlap
MED1 3 datasets
ChIP HCT-116_shLuc_thaps GSE121798.MED1.HCT-116_shLuc_thaps 110 bp overlap
ChIP Hep-G2 ENCSR959XNY.MED1.Hep-G2 173 bp overlap
ChIP HepG2 ENCFF495TSS 350 bp overlap
MEN1 2 datasets
ChIP MCF-7_E2 GSE85317.MEN1.MCF-7_E2 249 bp overlap
ChIP PC-3 GSE132827.MEN1.PC-3 172 bp overlap
MLLT1 2 datasets
ChIP GM12878 ENCFF995GXC 343 bp overlap
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 330 bp overlap
MTF2 1 dataset
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 342 bp overlap
MXI1 4 datasets
ChIP HeLa-S3 ENCSR000ECU.MXI1.HeLa-S3 197 bp overlap
ChIP IMR-90 ENCSR000EFE.MXI1.IMR-90 199 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 255 bp overlap
ChIP neural ENCSR934NHU.MXI1.neural 315 bp overlap
MYCN 2 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 250 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 295 bp overlap
MYF5 1 dataset
ChIP Rh18 GSE84628.MYF5.Rh18 181 bp overlap
MYOD1 3 datasets
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 236 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 145 bp overlap
ChIP myoblast GSE50413.MYOD1.myoblast 149 bp overlap
NCAPH2 3 datasets
ChIP IMR-90_Bethyl275_G GSE118494.NCAPH2.IMR-90_Bethyl275_G 192 bp overlap
ChIP IMR-90_Bethyl275_OIS GSE118494.NCAPH2.IMR-90_Bethyl275_OIS 350 bp overlap
ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 292 bp overlap
NFE2L2 1 dataset
ChIP A-549 GSE113497.NFE2L2.A-549 234 bp overlap
NR3C1 1 dataset
ChIP A-549 ENCSR000BHE.NR3C1.A-549 127 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 167 bp overlap
OVOL1 2 datasets
ChIP MCF-7 ENCFF537GWI 182 bp overlap
ChIP MCF-7 ENCSR829WBA.OVOL1.MCF-7 113 bp overlap
PHF8 1 dataset
ChIP Hep-G2 ENCSR604VAE.PHF8.Hep-G2 284 bp overlap
PHIP 2 datasets
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 350 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 350 bp overlap
POLR2A 5 datasets
ChIP HeLa-S3 ENCFF224LWS 313 bp overlap
ChIP adrenal gland ENCFF843OBJ 306 bp overlap
ChIP esophagus muscularis mucosa ENCFF759BBR 302 bp overlap
ChIP esophagus muscularis mucosa ENCFF791ZXN 292 bp overlap
ChIP upper lobe of left lung ENCFF199JUI 251 bp overlap
PRMT3 1 dataset
ChIP HepG2 ENCFF257VCG 290 bp overlap
PTBP1 1 dataset
ChIP K-562 GSE120104.PTBP1.K-562 207 bp overlap
RAD21 4 datasets
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 308 bp overlap
ChIP HeLa-S3_CTCF-s-OE GSE108869.RAD21.HeLa-S3_CTCF-s-OE 304 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 301 bp overlap
ChIP SLK_CTCF-KD GSE138105.RAD21.SLK_CTCF-KD 124 bp overlap
RBM22 2 datasets
ChIP HepG2 ENCFF292RVQ 325 bp overlap
ChIP HepG2 ENCFF561IAJ 338 bp overlap
RCOR1 1 dataset
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 81 bp overlap
RREB1 1 dataset
ChIP HepG2 ENCFF986CSN 234 bp overlap
RUVBL2 1 dataset
ChIP Huh-7 GSE97411.RUVBL2.Huh-7 286 bp overlap
SAP130 1 dataset
ChIP HepG2 ENCFF892EHZ 175 bp overlap
SIN3A 4 datasets
ChIP A-549 ENCSR513XQX.SIN3A.A-549 350 bp overlap
ChIP HUVEC-C GSE103245.SIN3A.HUVEC-C 256 bp overlap
ChIP Hep-G2 ENCSR000BGL.SIN3A.Hep-G2 105 bp overlap
ChIP MCF-7 ENCSR468LUO.SIN3A.MCF-7 264 bp overlap
SMAD2-3 1 dataset
ChIP HGrC1_C134W-TGF GSE138496.SMAD2-3.HGrC1_C134W-TGF 119 bp overlap
SMARCA4 8 datasets
ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 188 bp overlap
ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 82 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 350 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 350 bp overlap
ChIP J-Lat_GFP-Clone-A72_JQ1 GSE100266.SMARCA4.J-Lat_GFP-Clone-A72_JQ1 274 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 242 bp overlap
ChIP MCF-7 GSE140185.SMARCA4.MCF-7 170 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 65 bp overlap
SMARCC1 2 datasets
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 106 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 53 bp overlap
SMC1 1 dataset
ChIP IMR-90_G GSE118494.SMC1.IMR-90_G 190 bp overlap
SMC3 1 dataset
ChIP IMR-90 ENCSR000HPG.SMC3.IMR-90 275 bp overlap
SNAI2 4 datasets
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 102 bp overlap
ChIP SMS-CTR_shSNAI2 GSE137168.SNAI2.SMS-CTR_shSNAI2 267 bp overlap
ChIP keratinocyte_LacZ GSE55421.SNAI2.keratinocyte_LacZ 234 bp overlap
ChIP keratinocyte_SHCTR GSE55421.SNAI2.keratinocyte_SHCTR 165 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 207 bp overlap
SPI1 1 dataset
ChIP HL-60 ENCFF645GBT 266 bp overlap
STAG1 1 dataset
ChIP MCF-7_E2_SHCTCF ERP000209.STAG1.MCF-7_E2_SHCTCF 128 bp overlap
STAG2 1 dataset
ChIP OCI-AML-3 GSE111537.STAG2.OCI-AML-3 143 bp overlap
SUPT5H 1 dataset
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 105 bp overlap
TAF1 1 dataset
ChIP Hep-G2 ENCSR918OKK.TAF1.Hep-G2 176 bp overlap
TCF7L2 1 dataset
ChIP Panc1 ENCFF829HHL 86 bp overlap
TEAD3 1 dataset
ChIP HepG2 ENCFF054UUL 255 bp overlap
TEAD4 3 datasets
ChIP BJ_fibroblast_CD13-neg GSE114367.TEAD4.BJ_fibroblast_CD13-neg 164 bp overlap
ChIP HUCCT1 GSE68296.TEAD4.HUCCT1 184 bp overlap
ChIP HepG2 ENCFF250NXO 210 bp overlap
TFDP1 1 dataset
ChIP HepG2 ENCFF717XKC 301 bp overlap
THAP1 2 datasets
ChIP K-562 ENCSR000BNN.THAP1.K-562 97 bp overlap
ChIP K562 ENCFF851EDE 261 bp overlap
THRB 1 dataset
ChIP Hep-G2 ENCSR430JGJ.THRB.Hep-G2 139 bp overlap
TP53 3 datasets
ChIP IMR-90_APO GSE53491.TP53.IMR-90_APO 321 bp overlap
ChIP MCF-7_nutlin GSE86164.TP53.MCF-7_nutlin 52 bp overlap
ChIP MDA-MB-231 GSE95303.TP53.MDA-MB-231 189 bp overlap
TP63 1 dataset
ChIP BxPC-3 GSE115461.TP63.BxPC-3 85 bp overlap
UBTF 1 dataset
ChIP K-562 ENCSR000EFZ.UBTF.K-562 96 bp overlap
VDR 1 dataset
ChIP THP-1_1d_1-25-OH-2D3 GSE89431.VDR.THP-1_1d_1-25-OH-2D3 228 bp overlap
YY1 2 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 262 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 329 bp overlap
ZBED4 1 dataset
ChIP Hep-G2 ENCSR409PMR.ZBED4.Hep-G2 151 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 350 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 270 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 294 bp overlap
ZKSCAN2 1 dataset
ChIP HEK293T GSE78099.ZKSCAN2.HEK293T 173 bp overlap
ZNF12 1 dataset
ChIP Hep-G2 ENCSR711KBM.ZNF12.Hep-G2 130 bp overlap
ZNF143 3 datasets
ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 149 bp overlap
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 176 bp overlap
ChIP K-562 GSE39263.ZNF143.K-562 185 bp overlap
ZNF2 1 dataset
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 319 bp overlap
ZNF273 1 dataset
ChIP HEK293T GSE78099.ZNF273.HEK293T 251 bp overlap
ZNF341 2 datasets
ChIP HEK293 ENCFF944VMC 249 bp overlap
ChIP HEK293 GSE76494.ZNF341.HEK293 119 bp overlap
ZNF395 1 dataset
ChIP K562 ENCFF464EIT 131 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 262 bp overlap
ZNF548 1 dataset
ChIP HEK293T GSE78099.ZNF548.HEK293T 179 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 229 bp overlap