chr7 : 141,430,495 141,431,173
678 bp 137 TFs 3 linked genes
This 678 bp open chromatin element is linked to AGK-DT, AGK, and DENND11 and is bound by 137 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
AGK-DT 120.3 kb Distal Multiome
AGK 120.4 kb Distal Multiome
DENND11 271.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr7:141,425,495 – 141,436,173
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
137 transcription factors
Source
Cell type
ASCL1 2 datasets
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 113 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 134 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 670 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 678 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 230 bp overlap
Arid3a 1 dataset
Motif ES_0h ES_0h-Arid3a_MA0151.1 6 bp overlap
BAF155 1 dataset
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 55 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 271 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 655 bp overlap
BRD3 1 dataset
ChIP K-562_IBET151_500nM GSE120715.BRD3.K-562_IBET151_500nM 153 bp overlap
BRD4 4 datasets
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 137 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 207 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 484 bp overlap
ChIP hESC GSE33281.BRD4.hESC 125 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 221 bp overlap
CHD7 1 dataset
ChIP H1 ENCFF126NLU 506 bp overlap
CLOCK 1 dataset
ChIP U2OS GSE44236.CLOCK.U2OS 177 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 129 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 88 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 102 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 145 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 275 bp overlap
CTCF 34 datasets
Motif ES_0h ES_0h-CTCF_MA1929.2 31 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF764RHO 277 bp overlap
ChIP H9 ENCFF152GTF 389 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 228 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 460 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 158 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 101 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 293 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 271 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 167 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 149 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 190 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 167 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 229 bp overlap
ChIP endodermal cell ENCFF471YCZ 366 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 354 bp overlap
ChIP heart ENCSR778ZPK.CTCF.heart 274 bp overlap
ChIP heart right ventricle ENCFF027ORH 376 bp overlap
ChIP heart right ventricle ENCFF435TKW 362 bp overlap
ChIP heart_left-ventricle ENCSR791AYW.CTCF.heart_left-ventricle 241 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 147 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 193 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 160 bp overlap
ChIP islet ERP004003.CTCF.islet 508 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 261 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 238 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 186 bp overlap
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 570 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 280 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 121 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 289 bp overlap
ChIP thyroid-gland ENCSR033KMZ.CTCF.thyroid-gland 362 bp overlap
ChIP thyroid-gland ENCSR145HBC.CTCF.thyroid-gland 269 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 405 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF460KDD 306 bp overlap
ChIP BLaER1 ENCFF896HSY 215 bp overlap
E2F6 3 datasets
ChIP H1 ENCFF785DWK 165 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 170 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 272 bp overlap
EGR1 1 dataset
ChIP H1 ENCFF451BLH 231 bp overlap
EHF 1 dataset
Motif ES_0h ES_0h-EHF_MA0598.4 9 bp overlap
ELF1 3 datasets
ChIP A-549 GSE122203.ELF1.A-549 109 bp overlap
Motif ES_0h ES_0h-ELF1_MA0473.4 9 bp overlap
Motif ES_0h ES_0h-ELF1_MA0473.4 9 bp overlap
ELF3 2 datasets
Motif ES_0h ES_0h-ELF3_MA0640.3 9 bp overlap
Motif ES_0h ES_0h-ELF3_MA0640.3 9 bp overlap
ESR1 1 dataset
ChIP MCF-7_E2 ERP000901.ESR1.MCF-7_E2 130 bp overlap
ESRRA 1 dataset
ChIP BT-474 GSE81651.ESRRA.BT-474 436 bp overlap
ETS1 1 dataset
ChIP GM23338 ENCFF701IZH 247 bp overlap
ETV7 1 dataset
Motif ES_0h ES_0h-ETV7_MA1708.2 9 bp overlap
EZH2 3 datasets
ChIP PC-9 ENCSR793USK.EZH2.PC-9 678 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 199 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 314 bp overlap
Elf5 1 dataset
Motif ES_0h ES_0h-Elf5_MA0136.4 8 bp overlap
Erg 1 dataset
Motif ES_0h ES_0h-Erg_MA0474.4 10 bp overlap
FOXK1 1 dataset
ChIP WTC11 ENCFF875IGU 280 bp overlap
FOXP1 2 datasets
ChIP H9 GSE31006.FOXP1.H9 191 bp overlap
ChIP WTC11 ENCFF338WGC 418 bp overlap
GABPA 1 dataset
Motif ES_0h ES_0h-GABPA_MA0062.4 10 bp overlap
GFI1 1 dataset
Motif ES_0h ES_0h-GFI1_MA0038.3 11 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 329 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 536 bp overlap
Gfi1B 1 dataset
Motif ES_0h ES_0h-Gfi1B_MA0483.2 10 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF353UJQ 491 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 209 bp overlap
Hnf1A 1 dataset
Motif ES_0h ES_0h-Hnf1A_MA1991.2 10 bp overlap
IKZF2 1 dataset
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 1 dataset
Motif ES_0h ES_0h-Ikzf3_MA1992.2 9 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 226 bp overlap
JUN 2 datasets
ChIP ESC S34-ESC-d0-JUN-exp2 424 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 311 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 153 bp overlap
Lef1 1 dataset
Motif ES_0h ES_0h-Lef1_MA0768.3 8 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 50 bp overlap
MAX 4 datasets
ChIP H1 ENCFF601FOM 325 bp overlap
ChIP H1 ENCFF914VQY 237 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 380 bp overlap
ChIP WTC11 ENCFF223QFY 457 bp overlap
MEF2D 1 dataset
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 85 bp overlap
MXI1 1 dataset
Motif ES_0h ES_0h-MXI1_MA1108.3 6 bp overlap
MYC 2 datasets
ChIP BJ_INDUCED GSE36570.MYC.BJ_INDUCED 101 bp overlap
ChIP WA01 ENCSR000EBY.MYC.WA01 207 bp overlap
MYCN 1 dataset
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 154 bp overlap
MYOG 1 dataset
Motif ES_0h ES_0h-MYOG_MA0500.3 8 bp overlap
NANOG 7 datasets
ChIP WA01 ERP004238.NANOG.WA01 318 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 172 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 302 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 100 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 172 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 298 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 212 bp overlap
NEUROG2 1 dataset
ChIP MRC-5_N_05DPT GSE75910.NEUROG2.MRC-5_N_05DPT 222 bp overlap
NFYA 1 dataset
Motif ES_0h ES_0h-NFYA_MA0060.4 8 bp overlap
NFYC 1 dataset
Motif ES_0h ES_0h-NFYC_MA1644.2 7 bp overlap
NIPBL 1 dataset
ChIP WA09_heat-shock GSE105028.NIPBL.WA09_heat-shock 118 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 425 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 310 bp overlap
Olig2 1 dataset
Motif ES_0h ES_0h-Olig2_MA1997.2 6 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 287 bp overlap
PDX1 2 datasets
ChIP islet ERP001456.PDX1.islet 79 bp overlap
ChIP islet ERP001456.PDX1.islet 195 bp overlap
PHF8 2 datasets
ChIP K562 ENCFF217UCA 350 bp overlap
ChIP K562 ENCFF217UCA 598 bp overlap
POLR2A 1 dataset
ChIP H1 ENCFF566JSR 583 bp overlap
POU5F1 10 datasets
ChIP BG03 GSE21614.POU5F1.BG03 233 bp overlap
ChIP GM23338 ENCFF333SNB 50 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 678 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 172 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 596 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 228 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 165 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 401 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 85 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 180 bp overlap
PRDM9 1 dataset
Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap
PRRX2 1 dataset
ChIP WTC11 ENCFF107JGJ 256 bp overlap
RAD21 9 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 217 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 209 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 363 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 116 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 214 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 211 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 170 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 207 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 212 bp overlap
RBPJ 1 dataset
Motif ES_0h ES_0h-RBPJ_MA1116.2 6 bp overlap
RFX1 1 dataset
Motif DE_12h DE_12h-RFX1_MA0509.3 16 bp overlap
RFX2 1 dataset
Motif DE_12h DE_12h-RFX2_MA0600.3 14 bp overlap
RFX3 1 dataset
Motif DE_12h DE_12h-RFX3_MA0798.3 16 bp overlap
RFX5 1 dataset
Motif DE_12h DE_12h-RFX5_MA0510.3 14 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 629 bp overlap
Rfx6 1 dataset
Motif ES_0h ES_0h-Rfx6_MA1724.2 9 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 143 bp overlap
SAP30 3 datasets
ChIP H1 ENCFF149IOE 384 bp overlap
ChIP H1 ENCFF149IOE 419 bp overlap
ChIP H1 ENCFF149IOE 87 bp overlap
SIN3A 4 datasets
ChIP H1 ENCFF042ZSL 405 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 144 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 187 bp overlap
ChIP hiPSC_IID12 GSE106870.SIN3A.hiPSC_IID12 213 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 96 bp overlap
SMAD3 2 datasets
ChIP BG03 GSE21614.SMAD3.BG03 188 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 203 bp overlap
SMARCA4 5 datasets
ChIP NSC GSE125033.SMARCA4.NSC 461 bp overlap
ChIP WA09 GSE105028.SMARCA4.WA09 72 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 268 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 492 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 466 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 258 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 405 bp overlap
SMARCC1 3 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 157 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 217 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 353 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 518 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 299 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 172 bp overlap
SP8 1 dataset
Motif ES_0h ES_0h-SP8_MA0747.2 11 bp overlap
SPIB 1 dataset
Motif ES_0h ES_0h-SPIB_MA0081.3 13 bp overlap
STAT1 1 dataset
Motif ES_0h ES_0h-STAT1_MA0137.4 9 bp overlap
STAT3 1 dataset
Motif ES_0h ES_0h-STAT3_MA0144.3 9 bp overlap
Stat4 1 dataset
Motif ES_0h ES_0h-Stat4_MA0518.2 10 bp overlap
Stat5a 1 dataset
Motif ES_0h ES_0h-Stat5a_MA1624.2 9 bp overlap
Stat5b 1 dataset
Motif ES_0h ES_0h-Stat5b_MA1625.2 9 bp overlap
TAF1 2 datasets
ChIP WA01 ENCSR000BHO.TAF1.WA01 130 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 181 bp overlap
TBL1X 1 dataset
ChIP HEK293T GSE35197.TBL1X.HEK293T 190 bp overlap
TBP 4 datasets
ChIP hESC GSE122298.TBP.hESC 175 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 121 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 122 bp overlap
ChIP hiPSC_WTb_RNase-pos GSE128135.TBP.hiPSC_WTb_RNase-pos 232 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 116 bp overlap
TCF7L1 1 dataset
Motif ES_0h ES_0h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 1 dataset
Motif ES_0h ES_0h-TCF7L2_MA0523.2 9 bp overlap
TEAD1 2 datasets
Motif ES_0h ES_0h-TEAD1_MA0090.4 9 bp overlap
ChIP WTC11 ENCFF502QUV 348 bp overlap
TEAD4 3 datasets
Motif ES_0h ES_0h-TEAD4_MA0809.3 8 bp overlap
ChIP H1 ENCFF778PAX 245 bp overlap
ChIP H1 ENCFF778PAX 245 bp overlap
TP53 3 datasets
ChIP H9 GSE142050.TP53.H9 57 bp overlap
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 367 bp overlap
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 291 bp overlap
TRERF1 1 dataset
ChIP WTC11 ENCFF113BUM 245 bp overlap
Tcf12 1 dataset
Motif ES_0h ES_0h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif ES_0h ES_0h-Twist2_MA0633.3 6 bp overlap
USF1 3 datasets
ChIP H1 ENCFF090WVU 241 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 475 bp overlap
ChIP WTC11 ENCFF699QGS 401 bp overlap
USF2 1 dataset
ChIP WTC11 ENCFF139JAW 407 bp overlap
YY1 2 datasets
ChIP WA01 ENCSR000BKD.YY1.WA01 186 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 204 bp overlap
ZBTB24 1 dataset
Motif ES_0h ES_0h-ZBTB24_MA2330.1 10 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 144 bp overlap
ZBTB43 1 dataset
ChIP WTC11 ENCFF058JUB 160 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 308 bp overlap
ZBTB7C 1 dataset
Motif ES_0h ES_0h-ZBTB7C_MA0695.2 8 bp overlap
ZFP42 1 dataset
Motif ES_0h ES_0h-ZFP42_MA1651.2 13 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 411 bp overlap
ZNF114 1 dataset
ChIP GM23338 ENCFF631OSW 337 bp overlap
ZNF16 1 dataset
Motif ES_0h ES_0h-ZNF16_MA1654.2 21 bp overlap
ZNF175 1 dataset
Motif ES_0h ES_0h-ZNF175_MA2332.1 9 bp overlap
ZNF184 1 dataset
ChIP WTC11 ENCFF352POG 356 bp overlap
ZNF331 1 dataset
Motif ES_0h ES_0h-ZNF331_MA1726.2 10 bp overlap
ZNF396 1 dataset
ChIP WTC11 ENCFF776JWJ 285 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 75 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 481 bp overlap
ZNF528 1 dataset
Motif ES_0h ES_0h-ZNF528_MA1597.1 17 bp overlap
ZNF736 1 dataset
ChIP HEK293T GSE78099.ZNF736.HEK293T 124 bp overlap
ZSCAN18 1 dataset
ChIP WTC11 ENCFF867QWX 257 bp overlap
Zfp809 1 dataset
Motif ES_0h ES_0h-Zfp809_MA2125.1 9 bp overlap