chr6 : 2,984,790 2,985,243
453 bp 130 TFs 2 linked genes
This 453 bp open chromatin element is linked to NQO2 and LINC01011 and is bound by 130 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
NQO2 3.4 kb Proximal Proximity
LINC01011 3.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:2,979,790 – 2,990,243
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
130 transcription factors
Source
Cell type
ARID2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 194 bp overlap
ATF1 2 datasets
ChIP K-562 ENCSR091GVJ.ATF1.K-562 413 bp overlap
ChIP K562 ENCFF817JQF 453 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 201 bp overlap
BRD4 1 dataset
ChIP MCF-7_ARID1A-KO GSE123284.BRD4.MCF-7_ARID1A-KO 214 bp overlap
CAVIN1 1 dataset
ChIP K562 ENCFF731YBD 308 bp overlap
CDX2 1 dataset
ChIP LS180 GSE31939.CDX2.LS180 164 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 102 bp overlap
CEBPG 1 dataset
ChIP K562 ENCFF956TPS 68 bp overlap
CHD1 1 dataset
ChIP HeLa-S3 ENCSR392EAA.CHD1.HeLa-S3 153 bp overlap
CLOCK 1 dataset
ChIP U2OS GSE44236.CLOCK.U2OS 157 bp overlap
CREB3 1 dataset
ChIP K562 ENCFF985QJI 367 bp overlap
CREBBP 1 dataset
ChIP LS180_125 GSE39277.CREBBP.LS180_125 54 bp overlap
CREM 1 dataset
ChIP K-562 ENCSR077DKV.CREM.K-562 122 bp overlap
CTBP1 2 datasets
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 393 bp overlap
ChIP K562 ENCFF403WPG 373 bp overlap
CTCF 4 datasets
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 167 bp overlap
ChIP HeLa-S3 ENCSR000DUB.CTCF.HeLa-S3 132 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 179 bp overlap
ChIP U-937 ERP008568.CTCF.U-937 253 bp overlap
CXXC5 1 dataset
ChIP K562 ENCFF497CZN 421 bp overlap
DEK 1 dataset
ChIP HeLa-S3 ENCSR219MKK.DEK.HeLa-S3 129 bp overlap
EBF3 1 dataset
Motif DE_24h DE_24h-EBF3_MA1637.2 9 bp overlap
EMSY 1 dataset
ChIP K562 ENCFF511ZZZ 302 bp overlap
EP300 1 dataset
ChIP K-562 ENCSR000EGE.EP300.K-562 231 bp overlap
ESR1 2 datasets
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 439 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 414 bp overlap
ETV1 1 dataset
ChIP K562 ENCFF389WTI 201 bp overlap
ETV5 1 dataset
ChIP K562 ENCFF336FFA 412 bp overlap
Ebf2 1 dataset
Motif DE_24h DE_24h-Ebf2_MA1604.2 9 bp overlap
FIGLA 1 dataset
Motif DE_24h DE_24h-FIGLA_MA0820.2 6 bp overlap
FIP1L1 2 datasets
ChIP Hep-G2 ENCSR313VZG.FIP1L1.Hep-G2 278 bp overlap
ChIP Hep-G2 GSE120104.FIP1L1.Hep-G2 199 bp overlap
FOXA1 2 datasets
ChIP breast_tumor_Male_13 GSE104399.FOXA1.breast_tumor_Male_13 278 bp overlap
ChIP breast_tumor_Male_19 GSE104399.FOXA1.breast_tumor_Male_19 283 bp overlap
FOXP1 1 dataset
ChIP K562 ENCFF954SDY 285 bp overlap
Foxn1 1 dataset
Motif DE_24h DE_24h-Foxn1_MA1684.1 6 bp overlap
GATA1 8 datasets
ChIP K-562 GSE107726.GATA1.K-562 234 bp overlap
ChIP K-562 ENCSR000EFT.GATA1.K-562 149 bp overlap
ChIP K-562 ENCSR000EWM.GATA1.K-562 186 bp overlap
ChIP K-562_MYO1D-Hub_KO GSE107726.GATA1.K-562_MYO1D-Hub_KO 142 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 167 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 152 bp overlap
ChIP K562 ENCFF094CMK 178 bp overlap
ChIP K562 ENCFF876GFS 247 bp overlap
GATA2 13 datasets
ChIP K-562 ENCSR000DKA.GATA2.K-562 451 bp overlap
ChIP K-562 ENCSR000EWG.GATA2.K-562 218 bp overlap
ChIP K-562 ENCSR000BKM.GATA2.K-562 107 bp overlap
ChIP K-562 ENCSR257RKC.GATA2.K-562 206 bp overlap
ChIP K-562 ENCSR000EWG.GATA2.K-562 105 bp overlap
ChIP K562 ENCFF088XQT 281 bp overlap
ChIP K562 ENCFF513FTZ 220 bp overlap
ChIP K562 ENCFF544PCK 156 bp overlap
ChIP K562 ENCFF830LLA 327 bp overlap
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 321 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 196 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 186 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 249 bp overlap
GATA3 10 datasets
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 161 bp overlap
ChIP Jurkat GSE120063.GATA3.Jurkat 189 bp overlap
ChIP MCF-7 ENCFF178GBS 288 bp overlap
ChIP MCF-7 ENCFF352QVM 184 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 213 bp overlap
ChIP MCF-7 ENCSR000EWS.GATA3.MCF-7 203 bp overlap
ChIP MCF-7_E2 GSE40129.GATA3.MCF-7_E2 105 bp overlap
ChIP T-47D GSE51274.GATA3.T-47D 203 bp overlap
ChIP breast_tumor_Male_21 GSE104399.GATA3.breast_tumor_Male_21 235 bp overlap
ChIP thymocyte GSE71751.GATA3.thymocyte 188 bp overlap
GATA3_Nter 2 datasets
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 186 bp overlap
ChIP T-47D_flp-ctrl GSE99479.GATA3_Nter.T-47D_flp-ctrl 140 bp overlap
GATA6 6 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 276 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 249 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 257 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 419 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 282 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 151 bp overlap
HDAC2 3 datasets
ChIP K-562 ENCSR075HTM.HDAC2.K-562 358 bp overlap
ChIP K562 ENCFF919OMP 350 bp overlap
ChIP K562 ENCFF919OMP 409 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR197ALX.HDGF.K-562 453 bp overlap
HINFP 1 dataset
ChIP K562 ENCFF361QXJ 297 bp overlap
HNF4A 3 datasets
Motif DE_24h DE_24h-HNF4A_MA0114.5 9 bp overlap
ChIP IM95 GSE114018.HNF4A.IM95 286 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 177 bp overlap
HNF4G 1 dataset
Motif DE_24h DE_24h-HNF4G_MA0484.3 9 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 408 bp overlap
IKZF1 2 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 382 bp overlap
ChIP K562 ENCFF771OHZ 187 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 218 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 316 bp overlap
JUND 4 datasets
ChIP HeLa-S3 ENCSR000EDH.JUND.HeLa-S3 138 bp overlap
ChIP K-562 ENCSR000EGN.JUND.K-562 188 bp overlap
ChIP K562 ENCFF336RCR 400 bp overlap
ChIP K562 ENCFF830LVJ 189 bp overlap
KDM1A 1 dataset
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 171 bp overlap
KLF13 1 dataset
ChIP K-562 ENCSR608HVP.KLF13.K-562 450 bp overlap
KLF5 3 datasets
Motif DE_24h DE_24h-KLF5_MA0599.1 10 bp overlap
ChIP ESO-26 GSE132680.KLF5.ESO-26 187 bp overlap
ChIP KATO-III GSE51705.KLF5.KATO-III 141 bp overlap
MAFF 1 dataset
ChIP K-562 ENCSR000EGI.MAFF.K-562 136 bp overlap
MAFG 1 dataset
ChIP K-562 ENCSR818DQV.MAFG.K-562 372 bp overlap
MAFK 1 dataset
ChIP K-562 ENCSR000EGX.MAFK.K-562 151 bp overlap
MAX 4 datasets
ChIP HeLa-S3 ENCFF398RFF 253 bp overlap
ChIP K-562 ENCSR000EFV.MAX.K-562 138 bp overlap
ChIP K562 ENCFF110LJS 338 bp overlap
ChIP K562 ENCFF110LJS 263 bp overlap
MAZ 1 dataset
ChIP K562 ENCFF809XHP 274 bp overlap
MECOM 1 dataset
ChIP K562 ENCFF773RGL 256 bp overlap
MED1 1 dataset
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 392 bp overlap
MTA2 1 dataset
ChIP K-562 ENCSR411UYA.MTA2.K-562 215 bp overlap
MYC 1 dataset
ChIP K-562 ENCSR000EGJ.MYC.K-562 158 bp overlap
MYNN 1 dataset
ChIP K-562 ENCSR737LTZ.MYNN.K-562 171 bp overlap
Mafg 1 dataset
Motif DE_24h DE_24h-Mafg_MA0659.4 12 bp overlap
NCOR1 1 dataset
ChIP LS180_125 GSE39277.NCOR1.LS180_125 174 bp overlap
NELFE 3 datasets
ChIP HeLa GSE125534.NELFE.HeLa 240 bp overlap
ChIP HeLa_DOX GSE125534.NELFE.HeLa_DOX 194 bp overlap
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 157 bp overlap
NFE2 5 datasets
ChIP K-562 ENCSR000FCC.NFE2.K-562 176 bp overlap
ChIP K-562 ENCSR552YGL.NFE2.K-562 406 bp overlap
ChIP K-562 ENCSR000FCC.NFE2.K-562 107 bp overlap
ChIP K562 ENCFF047YKA 405 bp overlap
ChIP K562 ENCFF163BSI 100 bp overlap
NFE2L2 2 datasets
ChIP HeLa-S3 ENCSR707IUN.NFE2L2.HeLa-S3 137 bp overlap
ChIP K-562 ENCSR485GKE.NFE2L2.K-562 205 bp overlap
NHLH1 1 dataset
Motif DE_24h DE_24h-NHLH1_MA0048.3 9 bp overlap
NR4A1 2 datasets
ChIP K-562 ENCSR130PDE.NR4A1.K-562 350 bp overlap
ChIP K562 ENCFF998LHF 423 bp overlap
NRF1 6 datasets
ChIP K-562 ENCSR494TDU.NRF1.K-562 297 bp overlap
ChIP K-562 ENCSR998AJK.NRF1.K-562 306 bp overlap
ChIP K-562 ENCSR837EYC.NRF1.K-562 128 bp overlap
ChIP K-562_Ab_R157-1-3D4 GSE97661.NRF1.K-562_Ab_R157-1-3D4 137 bp overlap
ChIP K562 ENCFF689EWI 192 bp overlap
ChIP K562 ENCFF791UHF 402 bp overlap
Olig2 1 dataset
Motif DE_24h DE_24h-Olig2_MA1997.2 6 bp overlap
PHF19 1 dataset
ChIP DU145_SH4 GSE135623.PHF19.DU145_SH4 223 bp overlap
PHF8 1 dataset
ChIP WA01 ENCSR000ATK.PHF8.WA01 134 bp overlap
PHIP 3 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 453 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 453 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 453 bp overlap
PKNOX1 2 datasets
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 244 bp overlap
ChIP K562 ENCFF236IUS 134 bp overlap
POLR2A 4 datasets
ChIP HeLa-S3 ENCFF224LWS 451 bp overlap
ChIP HeLa-S3 ENCFF224LWS 157 bp overlap
ChIP Peyer's patch ENCFF767HVN 248 bp overlap
ChIP Peyer's patch ENCFF990IYL 405 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 311 bp overlap
POU5F1 3 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 437 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 276 bp overlap
ChIP hiPSC GSE149017.POU5F1.hiPSC 139 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 453 bp overlap
PTRF 1 dataset
ChIP K-562 ENCSR126FZN.PTRF.K-562 226 bp overlap
RAD21 1 dataset
ChIP HeLa-S3_CTCF-s-OE GSE108869.RAD21.HeLa-S3_CTCF-s-OE 207 bp overlap
RCOR1 2 datasets
ChIP K-562 ENCSR000EGC.RCOR1.K-562 126 bp overlap
ChIP K562 ENCFF216EEJ 243 bp overlap
SMAD2 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 232 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 268 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 453 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 442 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 453 bp overlap
SMARCA4 3 datasets
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 286 bp overlap
ChIP K562 ENCFF506JCB 307 bp overlap
ChIP K562 ENCFF506JCB 447 bp overlap
SMARCB1 3 datasets
ChIP HeLa-S3 ENCFF733PLR 358 bp overlap
ChIP HeLa-S3 ENCFF733PLR 105 bp overlap
ChIP HeLa-S3 ENCSR000EDK.SMARCB1.HeLa-S3 192 bp overlap
SMARCC1 1 dataset
ChIP HeLa-S3 ENCFF971JGA 345 bp overlap
SP3 1 dataset
Motif DE_24h DE_24h-SP3_MA0746.3 11 bp overlap
SP5 1 dataset
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
SPDEF 1 dataset
ChIP MCF-7 ENCSR042GSX.SPDEF.MCF-7 287 bp overlap
SPI1 1 dataset
ChIP K-562_NABUT GSE74999.SPI1.K-562_NABUT 102 bp overlap
SRF 1 dataset
ChIP K-562 ENCSR582IAO.SRF.K-562 243 bp overlap
STAT1 1 dataset
ChIP HeLa-S3 ENCSR000EZK.STAT1.HeLa-S3 221 bp overlap
SUPT5H 2 datasets
ChIP HeLa GSE125534.SUPT5H.HeLa 184 bp overlap
ChIP HeLa_DOX GSE125534.SUPT5H.HeLa_DOX 134 bp overlap
TAF1 1 dataset
ChIP HeLa-S3 ENCFF556LCN 279 bp overlap
TARDBP 1 dataset
ChIP K-562 GSE120104.TARDBP.K-562 157 bp overlap
TBP 2 datasets
ChIP HeLa-S3 ENCSR000EDD.TBP.HeLa-S3 204 bp overlap
ChIP hESC GSE122298.TBP.hESC 139 bp overlap
TCF7L2 4 datasets
ChIP HeLa-S3 ENCFF084KRL 327 bp overlap
ChIP HeLa-S3 ENCFF084KRL 120 bp overlap
ChIP HeLa-S3 ENCFF673QAB 247 bp overlap
ChIP HeLa-S3 ENCSR000EVE.TCF7L2.HeLa-S3 277 bp overlap
TEAD4 1 dataset
ChIP BJ_fibroblast GSE114367.TEAD4.BJ_fibroblast 141 bp overlap
TFAP4 1 dataset
ChIP K562 ENCFF727PXG 419 bp overlap
TFDP1 1 dataset
ChIP K562 ENCFF794ZXJ 209 bp overlap
Tcf12 1 dataset
Motif DE_24h DE_24h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_24h DE_24h-Twist2_MA0633.3 6 bp overlap
USF1 1 dataset
ChIP K562 ENCFF202SFC 227 bp overlap
YY1 2 datasets
ChIP K-562 ENCSR000BMH.YY1.K-562 284 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 432 bp overlap
ZBTB2 1 dataset
ChIP K-562 ENCSR230PTV.ZBTB2.K-562 276 bp overlap
ZBTB24 2 datasets
Motif DE_24h DE_24h-ZBTB24_MA2330.1 10 bp overlap
ChIP HCT-116 GSE111683.ZBTB24.HCT-116 154 bp overlap
ZBTB6 1 dataset
Motif DE_24h DE_24h-ZBTB6_MA1581.2 9 bp overlap
ZBTB7A 1 dataset
ChIP K-562 GSE103445.ZBTB7A.K-562 140 bp overlap
ZEB1 1 dataset
Motif DE_24h DE_24h-ZEB1_MA0103.4 6 bp overlap
ZEB2 2 datasets
ChIP K-562 ENCSR004GKA.ZEB2.K-562 264 bp overlap
ChIP K562 ENCFF795CMH 272 bp overlap
ZHX1 1 dataset
ChIP HeLa-S3 ENCSR855WKQ.ZHX1.HeLa-S3 281 bp overlap
ZNF135 1 dataset
Motif DE_24h DE_24h-ZNF135_MA1587.1 14 bp overlap
ZNF143 1 dataset
ChIP K562 ENCFF554TVF 232 bp overlap
ZNF24 2 datasets
ChIP K562 ENCFF497GLV 299 bp overlap
ChIP K562 ENCFF497GLV 95 bp overlap
ZNF273 1 dataset
ChIP HEK293T GSE78099.ZNF273.HEK293T 164 bp overlap
ZNF319 1 dataset
ChIP K562 ENCFF561ZSB 269 bp overlap
ZNF416 1 dataset
Motif DE_24h DE_24h-ZNF416_MA1979.2 10 bp overlap
ZNF528 1 dataset
Motif DE_24h DE_24h-ZNF528_MA1597.1 17 bp overlap
ZNF549 1 dataset
Motif DE_24h DE_24h-ZNF549_MA1728.2 8 bp overlap
ZNF592 2 datasets
ChIP K-562 ENCSR249BHQ.ZNF592.K-562 366 bp overlap
ChIP K562 ENCFF547OSS 453 bp overlap
ZNF766 1 dataset
ChIP K562 ENCFF348LDO 313 bp overlap
ZNF770 1 dataset
Motif DE_24h DE_24h-ZNF770_MA2099.1 8 bp overlap
ZNF816 1 dataset
Motif DE_24h DE_24h-ZNF816_MA1719.2 15 bp overlap