chr5 : 50,965,596 – 50,966,895
1,299 bp 125 TFs 2 linked genes
This 1.3 kb open chromatin element is linked to ENSG00000248918 and LINC02106 and is bound by 125 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000248918 2.8 kb Proximal Proximity
LINC02106 3.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:50,960,596 – 50,971,895
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
125 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 117 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 345 bp overlap
ARNT 1 dataset
ChIP RCC4 GSE85352.ARNT.RCC4 282 bp overlap
BCOR 3 datasets
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 184 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 581 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 1079 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 1250 bp overlap
BRD4 4 datasets
ChIP CHL-1 GSE95585.BRD4.CHL-1 223 bp overlap
ChIP SUM159PT_KO GSE131097.BRD4.SUM159PT_KO 143 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 252 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 302 bp overlap
CBX2 3 datasets
ChIP K-562 ENCSR000ATU.CBX2.K-562 353 bp overlap
ChIP K-562 ENCSR000ATU.CBX2.K-562 458 bp overlap
ChIP K-562 ENCSR000ATU.CBX2.K-562 131 bp overlap
CBX7 2 datasets
ChIP lymphocyte_DMSO GSE110139.CBX7.lymphocyte_DMSO 143 bp overlap
ChIP lymphocyte_DMSO GSE110139.CBX7.lymphocyte_DMSO 304 bp overlap
CBX8 1 dataset
ChIP K-562 ENCSR000ATW.CBX8.K-562 224 bp overlap
CEBPA 1 dataset
ChIP T-47D_progesterone GSE132649.CEBPA.T-47D_progesterone 50 bp overlap
CEBPB 1 dataset
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 119 bp overlap
CHD1 3 datasets
ChIP WA01 ENCSR000AQK.CHD1.WA01 191 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 261 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 591 bp overlap
CHD2 1 dataset
ChIP H1 ENCFF991MKH 331 bp overlap
CHD7 2 datasets
ChIP WA01 ENCSR000AVA.CHD7.WA01 133 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 132 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 272 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 258 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 440 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 1288 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF093OYK 103 bp overlap
ChIP BLaER1 ENCFF460KDD 272 bp overlap
ChIP BLaER1 ENCFF460KDD 244 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 495 bp overlap
EGR1 1 dataset
ChIP WA01 ENCSR000BJA.EGR1.WA01 370 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 537 bp overlap
EWSR1-FLI1 2 datasets
Motif DE_24h DE_24h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif ES_0h ES_0h-EWSR1-FLI1_MA0149.1 18 bp overlap
EZH2 20 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 397 bp overlap
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 308 bp overlap
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 423 bp overlap
ChIP GM23338 ENCFF613YON 62 bp overlap
ChIP GM23338 ENCFF613YON 313 bp overlap
ChIP GM23338 ENCFF613YON 70 bp overlap
ChIP H1 ENCFF232NZA 1299 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 319 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 218 bp overlap
ChIP T98G GSE112240.EZH2.T98G 207 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 158 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 1085 bp overlap
ChIP astrocyte ENCFF365JTP 785 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 234 bp overlap
ChIP fibroblast of lung ENCFF479BAW 237 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 234 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 491 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 179 bp overlap
ChIP neural progenitor cell ENCFF472NFV 925 bp overlap
ChIP neural progenitor cell ENCFF472NFV 929 bp overlap
EZH2_phosphoT487 1 dataset
ChIP OCI-Ly7 ENCSR565XSL.EZH2_phosphoT487.OCI-Ly7 150 bp overlap
FEZF2 1 dataset
Motif ES_0h ES_0h-FEZF2_MA2341.1 8 bp overlap
Foxn1 1 dataset
Motif DE_24h DE_24h-Foxn1_MA1684.1 6 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-2 96 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 149 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 389 bp overlap
GATAD2B 1 dataset
ChIP MCF-7 ENCSR979FQP.GATAD2B.MCF-7 293 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 242 bp overlap
Hnf1A 1 dataset
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
IKZF1 1 dataset
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
IRF2 1 dataset
Motif ES_0h ES_0h-IRF2_MA0051.2 16 bp overlap
JARID2 8 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 429 bp overlap
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 857 bp overlap
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 360 bp overlap
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 305 bp overlap
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 389 bp overlap
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 441 bp overlap
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 331 bp overlap
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 889 bp overlap
JUN 3 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 434 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 277 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 617 bp overlap
KDM1A 1 dataset
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 83 bp overlap
KDM4A 5 datasets
ChIP H1 ENCFF078LED 701 bp overlap
ChIP H1 ENCFF078LED 701 bp overlap
ChIP H1 ENCFF078LED 629 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 566 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 462 bp overlap
KLF1 1 dataset
Motif ES_0h ES_0h-KLF1_MA0493.3 8 bp overlap
KLF10 1 dataset
Motif ES_0h ES_0h-KLF10_MA1511.2 9 bp overlap
KLF11 1 dataset
Motif ES_0h ES_0h-KLF11_MA1512.2 10 bp overlap
KLF12 1 dataset
Motif ES_0h ES_0h-KLF12_MA0742.2 9 bp overlap
KLF14 1 dataset
Motif ES_0h ES_0h-KLF14_MA0740.2 9 bp overlap
KLF15 1 dataset
Motif ES_0h ES_0h-KLF15_MA1513.2 8 bp overlap
KLF16 1 dataset
Motif ES_0h ES_0h-KLF16_MA0741.1 11 bp overlap
KLF2 1 dataset
Motif ES_0h ES_0h-KLF2_MA1515.2 8 bp overlap
KLF4 1 dataset
Motif ES_0h ES_0h-KLF4_MA0039.5 8 bp overlap
KLF5 1 dataset
Motif ES_0h ES_0h-KLF5_MA0599.1 10 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 100 bp overlap
KLF7 1 dataset
Motif ES_0h ES_0h-KLF7_MA1959.2 8 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 357 bp overlap
MTF2 2 datasets
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 281 bp overlap
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 180 bp overlap
MXI1 1 dataset
ChIP SK-N-SH ENCFF746HVJ 321 bp overlap
NANOG 2 datasets
ChIP WA01 ENCSR000BMT.NANOG.WA01 123 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 467 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 302 bp overlap
NR1H2::RXRA 1 dataset
Motif DE_12h DE_12h-NR1H2RXRA_MA0115.1 17 bp overlap
NR1I2 1 dataset
Motif DE_12h DE_12h-NR1I2_MA1533.2 15 bp overlap
NR1I3 1 dataset
Motif DE_12h DE_12h-NR1I3_MA1534.2 8 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA0504.2 14 bp overlap
Nr2e3 1 dataset
Motif ES_0h ES_0h-Nr2e3_MA0164.2 6 bp overlap
PATZ1 1 dataset
Motif ES_0h ES_0h-PATZ1_MA1961.2 11 bp overlap
PCGF2 1 dataset
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 329 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 167 bp overlap
PLAG1 1 dataset
Motif ES_0h ES_0h-PLAG1_MA0163.1 14 bp overlap
POLR2A 6 datasets
ChIP gastroesophageal sphincter ENCFF070PCA 337 bp overlap
ChIP gastroesophageal sphincter ENCFF070PCA 114 bp overlap
ChIP gastroesophageal sphincter ENCFF826EZZ 417 bp overlap
ChIP gastroesophageal sphincter ENCFF826EZZ 97 bp overlap
ChIP neural cell ENCFF604SPB 157 bp overlap
ChIP stomach ENCFF278MYS 241 bp overlap
POU5F1 3 datasets
ChIP BG03 GSE21614.POU5F1.BG03 168 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 1013 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 288 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 381 bp overlap
PPARA::RXRA 1 dataset
Motif DE_12h DE_12h-PPARARXRA_MA1148.2 17 bp overlap
PPARD 1 dataset
Motif DE_12h DE_12h-PPARD_MA1550.2 14 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 303 bp overlap
PRDM15 2 datasets
ChIP WTC11 ENCFF108TMF 401 bp overlap
ChIP WTC11 ENCFF108TMF 401 bp overlap
PRDM9 1 dataset
Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap
Pparg::Rxra 1 dataset
Motif DE_12h DE_12h-PpargRxra_MA0065.3 13 bp overlap
Prdm5 1 dataset
Motif ES_0h ES_0h-Prdm5_MA1999.2 11 bp overlap
RAD21 1 dataset
ChIP neural ENCSR198ZYJ.RAD21.neural 268 bp overlap
RBBP5 2 datasets
ChIP WA01 ENCSR000AQC.RBBP5.WA01 180 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 371 bp overlap
RBPJ 1 dataset
Motif ES_0h ES_0h-RBPJ_MA1116.2 6 bp overlap
REST 6 datasets
ChIP SK-N-SH ENCSR000BJJ.REST.SK-N-SH 99 bp overlap
ChIP neural ENCSR000BTV.REST.neural 219 bp overlap
ChIP neural ENCSR000BTV.REST.neural 249 bp overlap
ChIP neural cell ENCFF882LXX 505 bp overlap
ChIP neural cell ENCFF882LXX 374 bp overlap
ChIP neural cell ENCFF882LXX 72 bp overlap
RNF2 5 datasets
ChIP GM12878 ENCSR679FAB.RNF2.GM12878 194 bp overlap
ChIP H1 ENCFF239FFS 287 bp overlap
ChIP H1 ENCFF239FFS 463 bp overlap
ChIP H1 ENCFF239FFS 311 bp overlap
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 268 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 335 bp overlap
SIN3A 1 dataset
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 139 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 142 bp overlap
SMC3 3 datasets
ChIP neural ENCSR404BPV.SMC3.neural 489 bp overlap
ChIP neural ENCSR404BPV.SMC3.neural 260 bp overlap
ChIP neural cell ENCFF795YGY 281 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 1241 bp overlap
SP1 3 datasets
Motif ES_0h ES_0h-SP1_MA0079.5 9 bp overlap
ChIP H1 ENCFF263FUH 218 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 570 bp overlap
SP2 1 dataset
Motif ES_0h ES_0h-SP2_MA0516.3 9 bp overlap
SP3 1 dataset
Motif ES_0h ES_0h-SP3_MA0746.3 11 bp overlap
SP4 1 dataset
Motif ES_0h ES_0h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SP8 1 dataset
Motif ES_0h ES_0h-SP8_MA0747.2 11 bp overlap
SP9 1 dataset
Motif ES_0h ES_0h-SP9_MA1564.2 10 bp overlap
STAT1 1 dataset
ChIP CD14_INFG GSE43036.STAT1.CD14_INFG 119 bp overlap
SUZ12 13 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 446 bp overlap
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 211 bp overlap
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 318 bp overlap
ChIP H1 ENCFF507HGF 271 bp overlap
ChIP H1 ENCFF881NFR 1299 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 280 bp overlap
ChIP NCCIT GSE71675.SUZ12.NCCIT 323 bp overlap
ChIP NT2/D1 ENCFF574SXS 516 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 168 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 336 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 367 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 584 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 264 bp overlap
Spi1 1 dataset
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
Spz1 1 dataset
Motif DE_24h DE_24h-Spz1_MA0111.1 11 bp overlap
TAF1 2 datasets
ChIP neural ENCSR000BTX.TAF1.neural 178 bp overlap
ChIP neural cell ENCFF468SPD 469 bp overlap
TCF12 4 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP H1 ENCFF203EBH 210 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 170 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 255 bp overlap
TCF7L1 1 dataset
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 1 dataset
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 441 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 346 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 404 bp overlap
TOP2A 1 dataset
ChIP KG-1_etoposide GSE114048.TOP2A.KG-1_etoposide 101 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 286 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 177 bp overlap
TSHZ2 2 datasets
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 223 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 370 bp overlap
USF2 1 dataset
ChIP K-562 GSE111469.USF2.K-562 243 bp overlap
Vdr 1 dataset
Motif DE_12h DE_12h-Vdr_MA0693.4 7 bp overlap
Wt1 1 dataset
Motif ES_0h ES_0h-Wt1_MA1627.2 10 bp overlap
YY1 2 datasets
ChIP WA01 ENCSR000BKD.YY1.WA01 134 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 174 bp overlap
ZBED4 1 dataset
Motif DE_24h DE_24h-ZBED4_MA2328.1 10 bp overlap
ZBTB18 1 dataset
Motif DE_24h DE_24h-ZBTB18_MA0698.2 11 bp overlap
ZBTB24 1 dataset
Motif DE_12h DE_12h-ZBTB24_MA2330.1 10 bp overlap
ZFP14 1 dataset
Motif DE_24h DE_24h-ZFP14_MA1972.1 15 bp overlap
ZFP3 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 157 bp overlap
ZNF143 1 dataset
Motif ES_0h ES_0h-ZNF143_MA0088.2 16 bp overlap
ZNF148 1 dataset
Motif ES_0h ES_0h-ZNF148_MA1653.2 10 bp overlap
ZNF205 1 dataset
ChIP HEK293T GSE78099.ZNF205.HEK293T 130 bp overlap
ZNF213 1 dataset
Motif DE_24h DE_24h-ZNF213_MA2121.1 12 bp overlap
ZNF281 2 datasets
Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap
ChIP K-562 GSE121133.ZNF281.K-562 206 bp overlap
ZNF320 1 dataset
Motif DE_24h DE_24h-ZNF320_MA1976.2 20 bp overlap
ZNF460 1 dataset
Motif ES_0h ES_0h-ZNF460_MA1596.1 16 bp overlap
ZNF530 1 dataset
Motif ES_0h ES_0h-ZNF530_MA1981.2 14 bp overlap
ZNF574 1 dataset
Motif DE_24h DE_24h-ZNF574_MA1982.2 14 bp overlap
ZNF680 1 dataset
Motif DE_12h DE_12h-ZNF680_MA1729.2 11 bp overlap
ZNF701 1 dataset
Motif DE_24h DE_24h-ZNF701_MA1987.2 17 bp overlap
ZNF770 1 dataset
Motif ES_0h ES_0h-ZNF770_MA2099.1 8 bp overlap
ZSCAN4 2 datasets
ChIP HEK293 ENCFF381BKT 451 bp overlap
ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 289 bp overlap
Zfx 1 dataset
Motif DE_24h DE_24h-Zfx_MA0146.3 10 bp overlap
Huangfu Lab · Publications · Resources · Contact