chr4 : 82,889,873 82,890,221
348 bp 106 TFs 1 linked gene
This 348 bp open chromatin element is linked to SEC31A and is bound by 106 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
SEC31A 992 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:82,884,873 – 82,895,221
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
106 transcription factors
Source
Cell type
AFF1 2 datasets
ChIP K-562 ENCSR426URK.AFF1.K-562 348 bp overlap
ChIP SEM_DMSO GSE90762.AFF1.SEM_DMSO 70 bp overlap
AFF4 1 dataset
ChIP MCF-7 GSE144036.AFF4.MCF-7 348 bp overlap
ARID2 2 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 157 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 182 bp overlap
ARNT 1 dataset
ChIP K-562 ENCSR613NUC.ARNT.K-562 336 bp overlap
ASH2L 1 dataset
ChIP Hep-G2 ENCSR508LMH.ASH2L.Hep-G2 163 bp overlap
ATF7 1 dataset
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 248 bp overlap
BCOR 2 datasets
ChIP K-562 ENCSR808AKZ.BCOR.K-562 348 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 53 bp overlap
BRD3 1 dataset
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD3.K-562_iBET-BD2-IFNG 203 bp overlap
BRD4 3 datasets
ChIP CHL-1 GSE95585.BRD4.CHL-1 288 bp overlap
ChIP HAP1 GSE108387.BRD4.HAP1 139 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 348 bp overlap
CEBPG 2 datasets
ChIP K562 ENCFF783ADE 165 bp overlap
ChIP K562 ENCFF956TPS 141 bp overlap
CHD1 1 dataset
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 160 bp overlap
CLOCK 1 dataset
ChIP MCF-7 ENCSR699YFX.CLOCK.MCF-7 126 bp overlap
E2F8 1 dataset
ChIP K-562 ENCSR953DVM.E2F8.K-562 241 bp overlap
E4F1 1 dataset
ChIP K-562 ENCSR731LHZ.E4F1.K-562 348 bp overlap
EHMT2 1 dataset
ChIP K562 ENCFF053BWO 309 bp overlap
ESR1 1 dataset
ChIP MCF-7_estradiol-DHT_4h GSE99626.ESR1.MCF-7_estradiol-DHT_4h 272 bp overlap
FOXM1 1 dataset
ChIP K-562 ENCSR429QPP.FOXM1.K-562 348 bp overlap
GATA2 1 dataset
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 107 bp overlap
HDAC1 5 datasets
ChIP K-562 ENCSR711VWL.HDAC1.K-562 348 bp overlap
ChIP K562 ENCFF928TKZ 348 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 215 bp overlap
ChIP NB4 GSE126720.HDAC1.NB4 182 bp overlap
ChIP NB4 GSE126720.HDAC1.NB4 114 bp overlap
HDAC2 2 datasets
ChIP K-562 ENCSR893WSB.HDAC2.K-562 323 bp overlap
ChIP K562 ENCFF744ALD 348 bp overlap
HDGF 3 datasets
ChIP GM12878 ENCFF653WYI 318 bp overlap
ChIP K-562 ENCSR563YDA.HDGF.K-562 251 bp overlap
ChIP K-562 ENCSR197ALX.HDGF.K-562 326 bp overlap
INO80 1 dataset
ChIP Hep-G2 GSE107730.INO80.Hep-G2 58 bp overlap
JUN 1 dataset
ChIP MDA-MB-231 GSE112444.JUN.MDA-MB-231 221 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 298 bp overlap
KDM1A 3 datasets
ChIP HepG2 ENCFF240UWG 76 bp overlap
ChIP HepG2 ENCFF240UWG 314 bp overlap
ChIP HepG2 ENCFF240UWG 127 bp overlap
KDM4A 1 dataset
ChIP H1 ENCFF078LED 348 bp overlap
KDM5A 2 datasets
ChIP HepG2 ENCFF105YGO 348 bp overlap
ChIP HepG2 ENCFF105YGO 212 bp overlap
KLF1 2 datasets
ChIP HEK293 ENCFF159QSW 328 bp overlap
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 290 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 282 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 63 bp overlap
KLF5 1 dataset
ChIP ESO-26 GSE132680.KLF5.ESO-26 248 bp overlap
KLF9 5 datasets
ChIP GBM1A GSE62211.KLF9.GBM1A 146 bp overlap
ChIP HEK293 ENCFF588INF 346 bp overlap
ChIP HEK293 ENCSR076EZB.KLF9.HEK293 330 bp overlap
ChIP MCF-7 ENCFF618FCM 348 bp overlap
ChIP MCF-7 ENCSR125ZYC.KLF9.MCF-7 215 bp overlap
KMT2A 9 datasets
ChIP CCRF-CEM GSE83671.KMT2A.CCRF-CEM 348 bp overlap
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 125 bp overlap
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 112 bp overlap
ChIP HepG2 ENCFF103PKS 348 bp overlap
ChIP IMS-M2_DMSO GSE129636.KMT2A.IMS-M2_DMSO 265 bp overlap
ChIP OCI-AML-3_DMSO GSE129636.KMT2A.OCI-AML-3_DMSO 279 bp overlap
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 348 bp overlap
ChIP RS4-11 GSE38403.KMT2A.RS4-11 139 bp overlap
ChIP THP-1 GSE83671.KMT2A.THP-1 195 bp overlap
MAX 1 dataset
ChIP K562 ENCFF524IJO 332 bp overlap
MED1 2 datasets
ChIP G296S_4 GSE85628.MED1.G296S_4 89 bp overlap
ChIP cardiomyocyte_5 GSE85628.MED1.cardiomyocyte_5 143 bp overlap
MEN1 3 datasets
ChIP MCF-7 GSE85317.MEN1.MCF-7 114 bp overlap
ChIP MCF-7 GSE85317.MEN1.MCF-7 87 bp overlap
ChIP RS4-11_DMSO-D3-180110 GSE127507.MEN1.RS4-11_DMSO-D3-180110 346 bp overlap
MLLT1 3 datasets
ChIP GM12878 ENCFF995GXC 348 bp overlap
ChIP K562 ENCFF074XRJ 206 bp overlap
ChIP MV4-11 GSE82116.MLLT1.MV4-11 105 bp overlap
MLLT10 1 dataset
ChIP HepG2 ENCFF596ZVX 193 bp overlap
MNT 2 datasets
ChIP K-562 ENCSR512NLO.MNT.K-562 348 bp overlap
ChIP K562 ENCFF450LDL 348 bp overlap
MYBL2 1 dataset
ChIP Hep-G2 ENCSR581KCO.MYBL2.Hep-G2 109 bp overlap
MYC 1 dataset
ChIP P493-6_scramble-shRNA GSE101853.MYC.P493-6_scramble-shRNA 104 bp overlap
MYCN 1 dataset
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 312 bp overlap
NBN 2 datasets
ChIP GM12878 ENCSR278SQL.NBN.GM12878 348 bp overlap
ChIP K-562 ENCSR085QEV.NBN.K-562 301 bp overlap
NCOA1 2 datasets
ChIP K-562 ENCSR658WFQ.NCOA1.K-562 323 bp overlap
ChIP K562 ENCFF962VHQ 333 bp overlap
NCOR1 1 dataset
ChIP K-562 ENCSR798ILC.NCOR1.K-562 348 bp overlap
NFATC3 2 datasets
ChIP GM12878 ENCSR437GBJ.NFATC3.GM12878 122 bp overlap
ChIP K-562 ENCSR051OUX.NFATC3.K-562 176 bp overlap
NFIC 1 dataset
ChIP HepG2 ENCFF169TKU 186 bp overlap
NKRF 1 dataset
ChIP K562 ENCFF815TQL 341 bp overlap
NR2F1 2 datasets
ChIP GM12878 ENCFF273VKX 348 bp overlap
ChIP GM12878 ENCSR514VYD.NR2F1.GM12878 189 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 286 bp overlap
OSR2 1 dataset
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 232 bp overlap
PATZ1 1 dataset
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 204 bp overlap
PHF8 1 dataset
ChIP Hep-G2 ENCSR604VAE.PHF8.Hep-G2 138 bp overlap
PHIP 1 dataset
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 91 bp overlap
POLR2A 5 datasets
ChIP GM12878 ENCFF263VRI 205 bp overlap
ChIP K562 ENCFF215CWW 268 bp overlap
ChIP body of pancreas ENCFF727UBE 164 bp overlap
ChIP upper lobe of left lung ENCFF199JUI 348 bp overlap
ChIP upper lobe of left lung ENCFF504HCM 331 bp overlap
POLR2G 1 dataset
ChIP K562 ENCFF047BLG 223 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 311 bp overlap
REST 1 dataset
ChIP HEK293 ENCSR896UBV.REST.HEK293 251 bp overlap
RNF2 2 datasets
ChIP K562 ENCFF653BQJ 348 bp overlap
ChIP K562 ENCFF653BQJ 348 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 178 bp overlap
RUNX3 1 dataset
ChIP GM12878 ENCFF395WHA 339 bp overlap
RXRA 2 datasets
ChIP liver ENCFF077DAP 222 bp overlap
ChIP liver ENCFF807CIA 205 bp overlap
SAP130 1 dataset
ChIP HepG2 ENCFF892EHZ 302 bp overlap
SAP30 1 dataset
ChIP H1 ENCFF149IOE 284 bp overlap
SIN3A 2 datasets
ChIP HUVEC-C GSE103245.SIN3A.HUVEC-C 139 bp overlap
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 139 bp overlap
SKIL 1 dataset
ChIP GM12878 ENCSR212YKD.SKIL.GM12878 348 bp overlap
SMARCA4 5 datasets
ChIP 22Rv1_PTEN-KO GSE115615.SMARCA4.22Rv1_PTEN-KO 242 bp overlap
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 237 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 348 bp overlap
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 303 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 62 bp overlap
SMARCC1 2 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 106 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 83 bp overlap
SMARCD3 2 datasets
ChIP MCF-7 GSE124225.SMARCD3.MCF-7 166 bp overlap
ChIP MCF-7_KO GSE124225.SMARCD3.MCF-7_KO 89 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 264 bp overlap
SREBP2 2 datasets
ChIP monocyte GSE129202.SREBP2.monocyte 171 bp overlap
ChIP monocyte GSE129202.SREBP2.monocyte 99 bp overlap
TAF1 3 datasets
ChIP Hep-G2 ENCSR918OKK.TAF1.Hep-G2 293 bp overlap
ChIP HepG2 ENCFF946IUP 348 bp overlap
ChIP HepG2 ENCFF946IUP 348 bp overlap
TBP 1 dataset
ChIP HeLa-S3 ENCSR000EDD.TBP.HeLa-S3 93 bp overlap
TBX21 1 dataset
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 96 bp overlap
THRB 2 datasets
ChIP Hep-G2 ENCSR430JGJ.THRB.Hep-G2 170 bp overlap
ChIP HepG2 ENCFF476INC 331 bp overlap
TP63 1 dataset
ChIP foreskin GSE126390.TP63.foreskin 140 bp overlap
TRIM24 3 datasets
ChIP K-562 ENCSR907MZR.TRIM24.K-562 280 bp overlap
ChIP K-562 ENCSR957LDM.TRIM24.K-562 215 bp overlap
ChIP LNCaP_ETOH GSE69331.TRIM24.LNCaP_ETOH 245 bp overlap
UBN1 1 dataset
ChIP HeLa GSE45024.UBN1.HeLa 149 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 348 bp overlap
ZBTB2 1 dataset
ChIP K-562 ENCSR230PTV.ZBTB2.K-562 254 bp overlap
ZBTB48 2 datasets
ChIP HEK293 ENCFF809BPK 348 bp overlap
ChIP HEK293 ENCSR781EQJ.ZBTB48.HEK293 307 bp overlap
ZEB2 2 datasets
ChIP K-562 ENCSR004GKA.ZEB2.K-562 98 bp overlap
ChIP K-562 ENCSR322CFO.ZEB2.K-562 141 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 100 bp overlap
ZNF184 3 datasets
ChIP K-562 ENCSR546IHU.ZNF184.K-562 253 bp overlap
ChIP K562 ENCFF579ZRD 288 bp overlap
ChIP K562 ENCFF579ZRD 87 bp overlap
ZNF2 1 dataset
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 316 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCFF784SLD 348 bp overlap
ZNF384 7 datasets
ChIP GM12878 ENCFF229VSP 171 bp overlap
ChIP GM12878 ENCSR000DYP.ZNF384.GM12878 54 bp overlap
ChIP HEK293T ENCFF019DZX 160 bp overlap
ChIP HEK293T ENCSR882ICT.ZNF384.HEK293T 348 bp overlap
ChIP HepG2 ENCFF129PLC 123 bp overlap
ChIP K-562 ENCSR000EFP.ZNF384.K-562 55 bp overlap
ChIP K562 ENCFF365NXQ 262 bp overlap
ZNF441 1 dataset
ChIP HEK293T GSE78099.ZNF441.HEK293T 101 bp overlap
ZNF546 1 dataset
ChIP HepG2 ENCFF996NZA 171 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 307 bp overlap
ZSCAN29 3 datasets
ChIP K-562 ENCSR175SZH.ZSCAN29.K-562 307 bp overlap
ChIP K562 ENCFF797SOU 324 bp overlap
ChIP K562 ENCFF797SOU 273 bp overlap