chr2 : 58,974,101 58,974,324
223 bp 111 TFs 0 linked genes
This 223 bp open chromatin element has no linked target genes and is bound by 111 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:58,969,101 – 58,979,324
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
111 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP HeLa GSE40632.AFF4.HeLa 112 bp overlap
ARID1A 2 datasets
ChIP HAP1 GSE108387.ARID1A.HAP1 206 bp overlap
ChIP NGP GSE134626.ARID1A.NGP 223 bp overlap
ARNTL 2 datasets
ChIP U2OS GSE130602.ARNTL.U2OS 74 bp overlap
ChIP U2OS_DMSO GSE130506.ARNTL.U2OS_DMSO 74 bp overlap
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 171 bp overlap
ChIP H1 ENCFF399KAM 197 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 223 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 215 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 205 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 190 bp overlap
BNC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 105 bp overlap
BRD4 9 datasets
ChIP HeLa_JQ1 GSE151038.BRD4.HeLa_JQ1 146 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 109 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 85 bp overlap
ChIP SUM159PT_100nMtrametinib300nMJQ1_24h GSE87418.BRD4.SUM159PT_100nMtrametinib300nMJQ1_24h 103 bp overlap
ChIP SUM159PT_100nMtrametinib_1h GSE87418.BRD4.SUM159PT_100nMtrametinib_1h 54 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 80 bp overlap
ChIP SUM159PT_100nMtrametinib_4h GSE87418.BRD4.SUM159PT_100nMtrametinib_4h 223 bp overlap
ChIP SUM159PT_100nMtrametinib_8h GSE87418.BRD4.SUM159PT_100nMtrametinib_8h 133 bp overlap
ChIP hESC GSE33281.BRD4.hESC 75 bp overlap
CBX2 1 dataset
ChIP HEK293T GSE34774.CBX2.HEK293T 152 bp overlap
CDK8 1 dataset
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 79 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 213 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_neural-crest-cell GSE108506.CHD7.hiPSC_derived_neural-crest-cell 223 bp overlap
CREB5 2 datasets
ChIP SK-N-SH ENCFF144PMI 184 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR758GOA.CREB5.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 223 bp overlap
CREBBP 1 dataset
ChIP MCF-7 ERP000901.CREBBP.MCF-7 153 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 223 bp overlap
CTBP1 1 dataset
ChIP HEK293T ENCSR237TFX.CTBP1.HEK293T 79 bp overlap
CTCF 1 dataset
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 137 bp overlap
DMRTA1 1 dataset
Motif ES_0h ES_0h-DMRTA1_MA1707.2 10 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 115 bp overlap
EGR1 1 dataset
ChIP H1 ENCFF451BLH 211 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 210 bp overlap
EP300 4 datasets
ChIP A-549 ENCSR000BPW.EP300.A-549 137 bp overlap
ChIP MCF-7_shCtrl GSE128445.EP300.MCF-7_shCtrl 223 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 136 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 139 bp overlap
ESR1 14 datasets
ChIP MCF-7 GSE128445.ESR1.MCF-7 128 bp overlap
ChIP MCF-7 GSE48930.ESR1.MCF-7 146 bp overlap
ChIP MCF-7 GSE103023.ESR1.MCF-7 117 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 128 bp overlap
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 119 bp overlap
ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 223 bp overlap
ChIP MCF-7_SIGATA_E2 GSE40129.ESR1.MCF-7_SIGATA_E2 109 bp overlap
ChIP MCF-7_TamR GSE128445.ESR1.MCF-7_TamR 223 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 157 bp overlap
ChIP MCF-7_jc5852 GSE126004.ESR1.MCF-7_jc5852 123 bp overlap
ChIP MCF-7_shCtrl_TamR GSE128445.ESR1.MCF-7_shCtrl_TamR 171 bp overlap
ChIP SUM44PE_ESR1_wildtype GSE100074.ESR1.SUM44PE_ESR1_wildtype 223 bp overlap
ChIP breast_tumor_Male_14 GSE104399.ESR1.breast_tumor_Male_14 223 bp overlap
ChIP breast_tumor_Male_5 GSE104399.ESR1.breast_tumor_Male_5 223 bp overlap
ESR1_Y537C 1 dataset
ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 194 bp overlap
ESRRA 2 datasets
ChIP SK-BR-3 GSE81651.ESRRA.SK-BR-3 175 bp overlap
ChIP SK-BR-3_HRG GSE81651.ESRRA.SK-BR-3_HRG 223 bp overlap
ESRRG 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR023KKB.ESRRG.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 223 bp overlap
FEZF1 2 datasets
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 125 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 175 bp overlap
FOXA1 4 datasets
ChIP MCF-7_TAMR_E2_TAM ERP000380.FOXA1.MCF-7_TAMR_E2_TAM 223 bp overlap
ChIP MCF-7_TamR GSE128445.FOXA1.MCF-7_TamR 186 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 94 bp overlap
ChIP breast_tumor_Male_14 GSE104399.FOXA1.breast_tumor_Male_14 140 bp overlap
FOXH1 1 dataset
Motif DE_12h DE_12h-FOXH1_MA0479.2 8 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 143 bp overlap
GATA2 4 datasets
ChIP SH-SY5Y ENCFF485YIB 149 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 223 bp overlap
ChIP SK-N-SH ENCFF764OZD 223 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 111 bp overlap
GATA3 3 datasets
ChIP BE2C GSE65664.GATA3.BE2C 223 bp overlap
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 67 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 223 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 223 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 185 bp overlap
GLIS3 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR507BWM.GLIS3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 206 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 223 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 223 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 223 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 223 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 161 bp overlap
HOXD13 1 dataset
ChIP HEK293 ENCFF590OUV 213 bp overlap
ISL1 2 datasets
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 223 bp overlap
ChIP SK-N-SH ENCFF285GEQ 223 bp overlap
JUN 3 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 217 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 223 bp overlap
ChIP MCF-7_TamR GSE128445.JUN.MCF-7_TamR 172 bp overlap
JUND 2 datasets
ChIP H1 ENCFF468JZD 188 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 170 bp overlap
KLF4 1 dataset
ChIP HAP1 GSE130417.KLF4.HAP1 80 bp overlap
KLF5 2 datasets
ChIP ESO-26 GSE132680.KLF5.ESO-26 223 bp overlap
ChIP HCC95 GSE88976.KLF5.HCC95 170 bp overlap
KMT2A 1 dataset
ChIP HEK293T_N-term_C104 GSE90762.KMT2A.HEK293T_N-term_C104 98 bp overlap
MAML3 2 datasets
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 223 bp overlap
ChIP SK-N-SH_RA GSE69119.MAML3.SK-N-SH_RA 223 bp overlap
MAZ 1 dataset
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 142 bp overlap
MED12 1 dataset
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 139 bp overlap
MYB 1 dataset
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
MYC 2 datasets
ChIP OVCAR-3 GSE154941.MYC.OVCAR-3 198 bp overlap
ChIP SK-N-AS GSE138295.MYC.SK-N-AS 143 bp overlap
MYCN 7 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 223 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 137 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 223 bp overlap
ChIP MYCN-3_low GSE83317.MYCN.MYCN-3_low 50 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 223 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 63 bp overlap
ChIP SHEP-21N GSE80151.MYCN.SHEP-21N 69 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 223 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 149 bp overlap
NELFE 1 dataset
ChIP HeLa GSE125534.NELFE.HeLa 223 bp overlap
NKX2-1 1 dataset
ChIP NCI-H1819 GSE39998.NKX2-1.NCI-H1819 223 bp overlap
NRIP1 2 datasets
ChIP MCF-7 ERP005838.NRIP1.MCF-7 183 bp overlap
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 118 bp overlap
NUTM1 1 dataset
ChIP NMC24335 GSE96775.NUTM1.NMC24335 66 bp overlap
PGR 1 dataset
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 58 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 116 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 223 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 223 bp overlap
POU5F1 2 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 223 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 223 bp overlap
PROX1 1 dataset
ChIP SW480 GSE60390.PROX1.SW480 204 bp overlap
Plagl1 1 dataset
Motif DE_12h DE_12h-Plagl1_MA1615.2 8 bp overlap
RAD21 7 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 136 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 223 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 223 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 128 bp overlap
ChIP HEK293_siCtrl GSE130135.RAD21.HEK293_siCtrl 223 bp overlap
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 223 bp overlap
ChIP HEK293_siE1A-TAZ GSE130135.RAD21.HEK293_siE1A-TAZ 223 bp overlap
RARA 1 dataset
ChIP hiPSC_D5 GSE132532.RARA.hiPSC_D5 223 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 223 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 189 bp overlap
RELA 2 datasets
ChIP Detroit-562_LPS GSE91018.RELA.Detroit-562_LPS 149 bp overlap
ChIP Detroit-562_TNFa GSE91018.RELA.Detroit-562_TNFa 214 bp overlap
RUVBL2 2 datasets
ChIP U2OS GSE130602.RUVBL2.U2OS 186 bp overlap
ChIP U2OS_cordycepin GSE130507.RUVBL2.U2OS_cordycepin 139 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 115 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 156 bp overlap
SMARCA4 5 datasets
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 76 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 70 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 223 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 223 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 200 bp overlap
SMARCB1 2 datasets
ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 70 bp overlap
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 145 bp overlap
SNAI2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR106GVM.SNAI2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 223 bp overlap
SOX2 2 datasets
ChIP LK2_DNp63 GSE137459.SOX2.LK2_DNp63 114 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 223 bp overlap
SP1 3 datasets
ChIP A-549 ENCSR000BPE.SP1.A-549 159 bp overlap
ChIP H1 ENCFF263FUH 223 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 223 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 223 bp overlap
STAG1 2 datasets
ChIP HeLa GSE126990.STAG1.HeLa 81 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 81 bp overlap
STAT3 1 dataset
ChIP HCC1187 GSE152203.STAT3.HCC1187 205 bp overlap
TAF1 1 dataset
ChIP H1 ENCFF478SZO 223 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 97 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 223 bp overlap
TCF12 2 datasets
ChIP A-549 ENCSR000BQQ.TCF12.A-549 124 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 197 bp overlap
TCF4 1 dataset
ChIP SK-N-SH ENCFF270OWF 223 bp overlap
TEAD1 2 datasets
Motif ES_0h ES_0h-TEAD1_MA0090.4 9 bp overlap
ChIP HEK293_siE1A GSE130135.TEAD1.HEK293_siE1A 223 bp overlap
TEAD2 1 dataset
Motif ES_0h ES_0h-TEAD2_MA1121.2 7 bp overlap
TEAD3 1 dataset
Motif ES_0h ES_0h-TEAD3_MA0808.1 8 bp overlap
TEAD4 10 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 223 bp overlap
ChIP BJ_fibroblast_CD13-neg GSE114367.TEAD4.BJ_fibroblast_CD13-neg 188 bp overlap
ChIP BJ_fibroblast_CD13-pos GSE114367.TEAD4.BJ_fibroblast_CD13-pos 184 bp overlap
ChIP ESC S26-ESC-d0-TEAD4-exp1 223 bp overlap
Motif ES_0h ES_0h-TEAD4_MA0809.3 8 bp overlap
ChIP HEK293_siCtrl GSE130135.TEAD4.HEK293_siCtrl 223 bp overlap
ChIP HEK293_siE1A GSE130135.TEAD4.HEK293_siE1A 223 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 223 bp overlap
ChIP SNU-216 GSE44416.TEAD4.SNU-216 223 bp overlap
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 198 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 220 bp overlap
TFAP2C 3 datasets
ChIP HCC1954 GSE126897.TFAP2C.HCC1954 198 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 223 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 223 bp overlap
TLE3 1 dataset
ChIP MCF-7 GSE41561.TLE3.MCF-7 161 bp overlap
TRIM28 2 datasets
ChIP HEK293 ENCSR618HNF.TRIM28.HEK293 112 bp overlap
ChIP U2OS ENCSR000EYC.TRIM28.U2OS 118 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 223 bp overlap
TWIST1 2 datasets
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 77 bp overlap
ChIP SHEP-21N_24h GSE80151.TWIST1.SHEP-21N_24h 95 bp overlap
UBN1 1 dataset
ChIP HeLa GSE45024.UBN1.HeLa 191 bp overlap
YY1AP1 1 dataset
ChIP HEK293_siCtrl GSE130135.YY1AP1.HEK293_siCtrl 223 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 223 bp overlap
ZFP3 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 210 bp overlap
ZNF10 2 datasets
ChIP HEK293 ENCFF611ZJI 194 bp overlap
ChIP HEK293 ENCSR019WUS.ZNF10.HEK293 156 bp overlap
ZNF148 2 datasets
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
ChIP K-562 ENCSR018MSO.ZNF148.K-562 223 bp overlap
ZNF281 1 dataset
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 220 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 138 bp overlap
ZNF479 1 dataset
ChIP HEK293T GSE78099.ZNF479.HEK293T 156 bp overlap
ZSCAN16 1 dataset
ChIP HEK293 GSE76494.ZSCAN16.HEK293 102 bp overlap