chr20 : 50,319,931 50,320,757
826 bp 115 TFs 1 linked gene
This 826 bp open chromatin element is linked to LINC01271 and is bound by 115 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC01271 728 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:50,314,931 – 50,325,757
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
115 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP HepG2 ENCFF237BMI 521 bp overlap
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 198 bp overlap
ARHGAP35 1 dataset
ChIP HepG2 ENCFF778RZN 366 bp overlap
ARID1A 1 dataset
ChIP RMG-I GSE104545.ARID1A.RMG-I 256 bp overlap
ARID2 1 dataset
ChIP Hep-G2 GSE69566.ARID2.Hep-G2 167 bp overlap
ARID5B 1 dataset
ChIP HepG2 ENCFF964FWK 400 bp overlap
BCOR 1 dataset
ChIP K-562 ENCSR808AKZ.BCOR.K-562 286 bp overlap
BRCA1 1 dataset
ChIP HepG2 ENCFF748DCX 105 bp overlap
BRD4 4 datasets
ChIP HeLa_JQ1 GSE151038.BRD4.HeLa_JQ1 145 bp overlap
ChIP PC-3_GDC-R GSE137207.BRD4.PC-3_GDC-R 142 bp overlap
ChIP PC-3_GDC-R_SAHA GSE137207.BRD4.PC-3_GDC-R_SAHA 99 bp overlap
ChIP SUM149_DMSO GSE63581.BRD4.SUM149_DMSO 261 bp overlap
CBFB 1 dataset
ChIP Hep-G2 ENCSR479RZV.CBFB.Hep-G2 261 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 100 bp overlap
CHD2 2 datasets
ChIP Hep-G2 ENCSR000EED.CHD2.Hep-G2 76 bp overlap
ChIP HepG2 ENCFF968LAV 113 bp overlap
CREBBP 1 dataset
ChIP PC-3_GDC-resist GSE147455.CREBBP.PC-3_GDC-resist 298 bp overlap
CTCF 1 dataset
ChIP MCF-7 ENCFF954TUV 158 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF093OYK 332 bp overlap
EHF 1 dataset
ChIP RWPE-1 GSE114241.EHF.RWPE-1 235 bp overlap
ELF1 1 dataset
ChIP Hep-G2 ENCSR321VGW.ELF1.Hep-G2 166 bp overlap
ELF3 3 datasets
ChIP PDAC GSE64557.ELF3.PDAC 144 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 221 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 471 bp overlap
EP300 1 dataset
ChIP PC-3 GSE147455.EP300.PC-3 185 bp overlap
ESR1 3 datasets
ChIP MCF-7_DHT GSE99626.ESR1.MCF-7_DHT 174 bp overlap
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 143 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 218 bp overlap
EZH2 1 dataset
ChIP Karpas-422_CPI360-D8 GSE134136.EZH2.Karpas-422_CPI360-D8 258 bp overlap
FOSL2 2 datasets
ChIP HepG2 ENCFF548CXY 357 bp overlap
ChIP HepG2 ENCFF548CXY 357 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 232 bp overlap
ChIP DE DE-FOXA2-1 614 bp overlap
ChIP DE DE-FOXA2-2 689 bp overlap
FOXK2 1 dataset
ChIP GM12878 ENCSR861JUQ.FOXK2.GM12878 74 bp overlap
FOXQ1 1 dataset
ChIP HepG2 ENCFF164USD 521 bp overlap
GABPB1 1 dataset
ChIP HepG2 ENCFF315AWN 566 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 538 bp overlap
ChIP DE DE-GATA4-2 662 bp overlap
ChIP foregut GSE117136.GATA4.foregut 311 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 377 bp overlap
GATA6 10 datasets
ChIP AGS GSE51936.GATA6.AGS 79 bp overlap
ChIP DE DE-GATA6-1 537 bp overlap
ChIP DE DE-GATA6-2 779 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 263 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 329 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 513 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 385 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 312 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 473 bp overlap
ChIP foregut GSE117136.GATA6.foregut 288 bp overlap
HDAC2 3 datasets
ChIP A-549 ENCSR659LJJ.HDAC2.A-549 287 bp overlap
ChIP PC-3 GSE147455.HDAC2.PC-3 175 bp overlap
ChIP PC-3_GDC-resist GSE147455.HDAC2.PC-3_GDC-resist 155 bp overlap
HMGXB3 1 dataset
ChIP HepG2 ENCFF161CYU 485 bp overlap
HMGXB4 3 datasets
ChIP HepG2 ENCFF179TAD 561 bp overlap
ChIP HepG2 ENCFF179TAD 492 bp overlap
ChIP HepG2 ENCFF179TAD 100 bp overlap
HOXB13 1 dataset
ChIP A549 ENCFF870NOA 351 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 456 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 290 bp overlap
IRF5 1 dataset
ChIP HepG2 ENCFF817YVE 457 bp overlap
JUN 1 dataset
ChIP Karpas-299 GSE151413.JUN.Karpas-299 507 bp overlap
JUNB 1 dataset
ChIP Karpas-299 GSE151413.JUNB.Karpas-299 106 bp overlap
KDM1A 4 datasets
ChIP A-549 ENCSR639GWS.KDM1A.A-549 332 bp overlap
ChIP A549 ENCFF633QSB 437 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 307 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 290 bp overlap
KLF4 1 dataset
ChIP PDAC GSE64557.KLF4.PDAC 237 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 266 bp overlap
MED1 4 datasets
ChIP HCT-116 GSE121798.MED1.HCT-116 155 bp overlap
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 166 bp overlap
ChIP HCT-116_shLuc_thaps GSE121798.MED1.HCT-116_shLuc_thaps 62 bp overlap
ChIP HCT-116_thaps GSE121798.MED1.HCT-116_thaps 127 bp overlap
MED26 1 dataset
ChIP HCT-116_aux GSE121355.MED26.HCT-116_aux 87 bp overlap
MTF2 2 datasets
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 125 bp overlap
ChIP HepG2 ENCFF916FZN 186 bp overlap
MXI1 1 dataset
ChIP HepG2 ENCFF493ITN 259 bp overlap
MYC 2 datasets
ChIP MCF-7 ENCFF394LGD 293 bp overlap
ChIP MCF-7 ENCFF767RTQ 205 bp overlap
NCOA1 2 datasets
ChIP HepG2 ENCFF624JES 290 bp overlap
ChIP HepG2 ENCFF624JES 77 bp overlap
NELFA 1 dataset
ChIP HeLa_1h-Flavo-0-H2O2 GSE93931.NELFA.HeLa_1h-Flavo-0-H2O2 203 bp overlap
NFE2 1 dataset
ChIP HepG2 ENCFF403RMK 265 bp overlap
NFIB 1 dataset
ChIP MCF-7 ENCFF925CGH 156 bp overlap
NFXL1 1 dataset
ChIP GM12878 ENCSR746XEG.NFXL1.GM12878 296 bp overlap
NIPBL 1 dataset
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.NIPBL.HCT-116_RAD21-mAC_500uM_auxin 67 bp overlap
NR3C1 3 datasets
ChIP BEAS-2B_TNF-DEX_IA1 GSE125623.NR3C1.BEAS-2B_TNF-DEX_IA1 290 bp overlap
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 464 bp overlap
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 235 bp overlap
PGR 1 dataset
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 50 bp overlap
PHIP 2 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 199 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 142 bp overlap
POLR2A 2 datasets
ChIP HepG2 ENCFF350RIU 100 bp overlap
ChIP MCF-7 ENCFF309IKZ 310 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 257 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 235 bp overlap
RBM25 3 datasets
ChIP K-562 ENCSR791OZM.RBM25.K-562 340 bp overlap
ChIP K562 ENCFF248CGR 114 bp overlap
ChIP K562 ENCFF957ORK 114 bp overlap
RELA 2 datasets
ChIP 786-O GSE109953.RELA.786-O 263 bp overlap
ChIP 786-O GSE86092.RELA.786-O 75 bp overlap
REST 2 datasets
ChIP A-549 ENCSR000BQP.REST.A-549 148 bp overlap
ChIP A-549 ENCSR892DRK.REST.A-549 154 bp overlap
SIN3A 1 dataset
ChIP A-549 ENCSR513XQX.SIN3A.A-549 287 bp overlap
SIX4 1 dataset
ChIP HepG2 ENCFF372NPG 341 bp overlap
SMAD1 1 dataset
ChIP Hep-G2 ENCSR213QOZ.SMAD1.Hep-G2 135 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 658 bp overlap
SMAD3 1 dataset
ChIP HepG2 ENCFF309PKF 257 bp overlap
SMAD9 1 dataset
ChIP HepG2 ENCFF185UOW 149 bp overlap
SMARCA4 1 dataset
ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 144 bp overlap
SMARCB1 1 dataset
ChIP Hep-G2 GSE69566.SMARCB1.Hep-G2 325 bp overlap
SNAI2 1 dataset
ChIP PC-9_2DF GSE131687.SNAI2.PC-9_2DF 132 bp overlap
SP1 1 dataset
ChIP Hep-G2 ENCSR460YAM.SP1.Hep-G2 99 bp overlap
SP2 2 datasets
ChIP HepG2 ENCFF667RFH 501 bp overlap
ChIP HepG2 ENCFF667RFH 320 bp overlap
STAT3 1 dataset
ChIP FaDu_DMSO GSE78212.STAT3.FaDu_DMSO 302 bp overlap
SUPT6H 1 dataset
ChIP HCT-116_Inhibitor GSE130509.SUPT6H.HCT-116_Inhibitor 53 bp overlap
SUZ12 1 dataset
ChIP Karpas-422_CPI360-D8 GSE134136.SUZ12.Karpas-422_CPI360-D8 492 bp overlap
TAF1 1 dataset
ChIP HeLa-S3 ENCFF556LCN 164 bp overlap
TEAD2 1 dataset
ChIP HepG2 ENCFF261IHC 190 bp overlap
TFDP1 1 dataset
ChIP HepG2 ENCFF717XKC 267 bp overlap
THAP7 3 datasets
ChIP HepG2 ENCFF034KPY 432 bp overlap
ChIP HepG2 ENCFF034KPY 561 bp overlap
ChIP HepG2 ENCFF034KPY 502 bp overlap
THRA 1 dataset
ChIP HepG2 ENCFF025KMX 385 bp overlap
WIZ 1 dataset
ChIP HepG2 ENCFF559CYZ 306 bp overlap
ZBED4 2 datasets
ChIP Hep-G2 ENCSR409PMR.ZBED4.Hep-G2 130 bp overlap
ChIP HepG2 ENCFF157CDZ 477 bp overlap
ZBTB39 1 dataset
ChIP HepG2 ENCFF875PVQ 51 bp overlap
ZEB1 1 dataset
ChIP PDAC GSE64557.ZEB1.PDAC 117 bp overlap
ZFP3 2 datasets
ChIP SK-N-SH ENCFF981MBE 441 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 556 bp overlap
ZFP36L1 1 dataset
ChIP HepG2 ENCFF375BAZ 392 bp overlap
ZKSCAN1 5 datasets
ChIP HeLa-S3 ENCFF104OCU 338 bp overlap
ChIP HeLa-S3 ENCSR000ECJ.ZKSCAN1.HeLa-S3 266 bp overlap
ChIP Hep-G2 ENCSR157CAU.ZKSCAN1.Hep-G2 175 bp overlap
ChIP K-562 ENCSR882ERE.ZKSCAN1.K-562 301 bp overlap
ChIP MCF-7 ENCSR449UFF.ZKSCAN1.MCF-7 65 bp overlap
ZMYM3 8 datasets
ChIP Hep-G2 ENCSR848YWD.ZMYM3.Hep-G2 194 bp overlap
ChIP Hep-G2_AC_JH39-2-2B9 GSE97661.ZMYM3.Hep-G2_AC_JH39-2-2B9 223 bp overlap
ChIP Hep-G2_Ab_JH39-2-2F10 GSE97661.ZMYM3.Hep-G2_Ab_JH39-2-2F10 314 bp overlap
ChIP HepG2 ENCFF408KTI 477 bp overlap
ChIP HepG2 ENCFF667RVD 361 bp overlap
ChIP K-562 ENCSR102KIN.ZMYM3.K-562 216 bp overlap
ChIP K-562_Ab_JH39-2-2F10 GSE97661.ZMYM3.K-562_Ab_JH39-2-2F10 205 bp overlap
ChIP K562 ENCFF361LXT 381 bp overlap
ZNF143 3 datasets
ChIP HeLa GSE39263.ZNF143.HeLa 263 bp overlap
ChIP MCF-7 GSE76454.ZNF143.MCF-7 290 bp overlap
ChIP MCF-7_E2 GSE76454.ZNF143.MCF-7_E2 271 bp overlap
ZNF219 1 dataset
ChIP HepG2 ENCFF266JIR 152 bp overlap
ZNF253 1 dataset
ChIP HepG2 ENCFF422LRI 336 bp overlap
ZNF256 1 dataset
ChIP HepG2 ENCFF863RQR 238 bp overlap
ZNF257 1 dataset
ChIP HEK293T GSE78099.ZNF257.HEK293T 85 bp overlap
ZNF263 2 datasets
ChIP K-562 ENCSR000EWN.ZNF263.K-562 361 bp overlap
ChIP K-562 ENCSR000EWN.ZNF263.K-562 151 bp overlap
ZNF264 1 dataset
ChIP HepG2 ENCFF453WJV 78 bp overlap
ZNF275 1 dataset
ChIP HepG2 ENCFF015JKD 229 bp overlap
ZNF550 2 datasets
ChIP Hep-G2 ENCSR198BHH.ZNF550.Hep-G2 244 bp overlap
ChIP HepG2 ENCFF175OGG 392 bp overlap
ZNF605 2 datasets
ChIP HepG2 ENCFF640NFJ 600 bp overlap
ChIP HepG2 ENCFF640NFJ 514 bp overlap
ZNF629 2 datasets
ChIP Hep-G2 ENCSR363ASY.ZNF629.Hep-G2 384 bp overlap
ChIP HepG2 ENCFF490FFQ 239 bp overlap
ZNF687 1 dataset
ChIP HepG2 ENCFF653WIX 209 bp overlap
ZNF772 2 datasets
ChIP HepG2 ENCFF728OGE 537 bp overlap
ChIP HepG2 ENCFF728OGE 461 bp overlap
ZNF776 1 dataset
ChIP HepG2 ENCFF009LSZ 241 bp overlap
ZNF788P 1 dataset
ChIP HepG2 ENCFF689IBZ 244 bp overlap
ZNF8 1 dataset
ChIP MCF-7 ENCFF142XPL 70 bp overlap
ZNF816 1 dataset
ChIP HepG2 ENCFF294VPD 325 bp overlap
ZSCAN21 1 dataset
ChIP HepG2 ENCFF676MFO 390 bp overlap