chr17 : 3,546,350 3,546,812
462 bp 106 TFs 7 linked genes
This 462 bp open chromatin element is linked to 7 target genes and is bound by 106 transcription factors.
Linked Genes
7 genes
Gene Expression Dist. to TSS Distance Link type
TRPV1 62.8 kb Distal Multiome
SHPK 89.6 kb Distal Multiome
CTNS 89.8 kb Distal Multiome
TAX1BP3 121.9 kb Distal Multiome
EMC6 122.2 kb Distal Multiome
ITGAE 177.2 kb Distal Multiome
NCBP3 299.6 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr17:3,541,350 – 3,551,812
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
106 transcription factors
Source
Cell type
AHDC1 2 datasets
ChIP HepG2 ENCFF069FSH 435 bp overlap
ChIP HepG2 ENCFF069FSH 195 bp overlap
ARID5B 1 dataset
ChIP HepG2 ENCFF964FWK 202 bp overlap
ARNTL 1 dataset
ChIP Hep-G2 ENCSR794LVK.ARNTL.Hep-G2 170 bp overlap
BCL6 1 dataset
ChIP HepG2 ENCFF423EJH 368 bp overlap
CEBPA 1 dataset
ChIP HepG2 ENCFF175DFS 299 bp overlap
DMAP1 1 dataset
ChIP Hep-G2 ENCSR670YPQ.DMAP1.Hep-G2 140 bp overlap
E2F8 1 dataset
ChIP HepG2 ENCFF117UYU 462 bp overlap
EGR1 1 dataset
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 253 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 330 bp overlap
EP300 3 datasets
ChIP Hep-G2 ENCSR000BLW.EP300.Hep-G2 280 bp overlap
ChIP Hep-G2 ENCSR000EDV.EP300.Hep-G2 125 bp overlap
ChIP HepG2 ENCFF354ACD 299 bp overlap
ESR1 3 datasets
ChIP U2OS_100nM-E2 GSE151039.ESR1.U2OS_100nM-E2 369 bp overlap
ChIP U2OS_10nM-E2 GSE151039.ESR1.U2OS_10nM-E2 327 bp overlap
ChIP U2OS_10nM-E2-B GSE151039.ESR1.U2OS_10nM-E2-B 403 bp overlap
ESRRA 1 dataset
ChIP HepG2 ENCFF033DVS 377 bp overlap
FOSL2 1 dataset
ChIP HepG2 ENCFF796NIA 254 bp overlap
FOXA2 3 datasets
ChIP Caco-2 GSE66218.FOXA2.Caco-2 151 bp overlap
ChIP DE DE-FOXA2-1 420 bp overlap
ChIP DE DE-FOXA2-2 448 bp overlap
FOXK1 1 dataset
ChIP Hep-G2 ENCSR603BJQ.FOXK1.Hep-G2 298 bp overlap
FOXO1 1 dataset
ChIP HepG2 ENCFF088FIR 317 bp overlap
FOXP1 1 dataset
ChIP Hep-G2 ENCSR369YUK.FOXP1.Hep-G2 313 bp overlap
FOXP4 2 datasets
ChIP Hep-G2 ENCSR232LLP.FOXP4.Hep-G2 350 bp overlap
ChIP HepG2 ENCFF462ULY 290 bp overlap
GATA2 2 datasets
ChIP Hep-G2 ENCSR897LDT.GATA2.Hep-G2 222 bp overlap
ChIP HepG2 ENCFF905PYM 333 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 437 bp overlap
ChIP DE DE-GATA4-2 427 bp overlap
ChIP foregut GSE117136.GATA4.foregut 404 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 454 bp overlap
ChIP DE DE-GATA6-2 462 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 385 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 431 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 462 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 462 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 438 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 429 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 430 bp overlap
GATAD2A 1 dataset
ChIP HepG2 ENCFF252XNH 418 bp overlap
GFI1 1 dataset
ChIP HepG2 ENCFF472INF 404 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 426 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 294 bp overlap
GLYR1 1 dataset
ChIP HepG2 ENCFF114PDZ 339 bp overlap
HDAC1 2 datasets
ChIP Hep-G2 ENCSR750OWO.HDAC1.Hep-G2 172 bp overlap
ChIP HepG2 ENCFF304IEJ 308 bp overlap
HDAC2 1 dataset
ChIP HepG2 ENCFF990GUQ 352 bp overlap
HMG20A 1 dataset
ChIP HepG2 ENCFF599VWU 400 bp overlap
HNF1B 1 dataset
ChIP Hep-G2 ENCSR127XTZ.HNF1B.Hep-G2 227 bp overlap
HNF4A 11 datasets
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 245 bp overlap
Motif DE_48h DE_48h-HNF4A_MA0114.5 9 bp overlap
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 359 bp overlap
ChIP Hep-G2 ENCSR000BLF.HNF4A.Hep-G2 285 bp overlap
ChIP Hep-G2 ERP000209.HNF4A.Hep-G2 199 bp overlap
ChIP Hep-G2 ENCSR000EEU.HNF4A.Hep-G2 152 bp overlap
ChIP HepG2 ENCFF146SSF 182 bp overlap
ChIP HepG2 ENCFF669NAM 261 bp overlap
ChIP IM95 GSE114018.HNF4A.IM95 300 bp overlap
ChIP liver ENCFF354NRH 351 bp overlap
ChIP liver ENCFF449HPV 369 bp overlap
HNF4G 2 datasets
Motif DE_48h DE_48h-HNF4G_MA0484.3 9 bp overlap
ChIP Hep-G2 ENCSR000BNJ.HNF4G.Hep-G2 221 bp overlap
HOMEZ 1 dataset
ChIP HepG2 ENCFF800ZQH 306 bp overlap
HOXA3 1 dataset
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 198 bp overlap
ISL2 1 dataset
ChIP Hep-G2 ENCSR492IHH.ISL2.Hep-G2 185 bp overlap
KDM1A 1 dataset
ChIP HepG2 ENCFF240UWG 462 bp overlap
KDM3A 1 dataset
ChIP Hep-G2 ENCSR387JKT.KDM3A.Hep-G2 182 bp overlap
KDM5B 1 dataset
ChIP HepG2 ENCFF706LUI 308 bp overlap
LCOR 1 dataset
ChIP HepG2 ENCFF499KCU 232 bp overlap
LCORL 1 dataset
ChIP HepG2 ENCFF017FTI 385 bp overlap
LIN54 4 datasets
Motif DE_48h DE_48h-LIN54_MA0619.2 7 bp overlap
ChIP Hep-G2 ENCSR597MCV.LIN54.Hep-G2 231 bp overlap
ChIP HepG2 ENCFF662XDE 462 bp overlap
ChIP HepG2 ENCFF662XDE 343 bp overlap
MAX 4 datasets
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 324 bp overlap
ChIP Hep-G2 ENCSR000BTM.MAX.Hep-G2 198 bp overlap
ChIP HepG2 ENCFF479OHI 352 bp overlap
ChIP HepG2 ENCFF507HCX 223 bp overlap
MED1 2 datasets
ChIP Hep-G2 ENCSR959XNY.MED1.Hep-G2 246 bp overlap
ChIP HepG2 ENCFF495TSS 379 bp overlap
MGA 2 datasets
ChIP HepG2 ENCFF057YJE 462 bp overlap
ChIP HepG2 ENCFF057YJE 435 bp overlap
MNX1 2 datasets
ChIP Hep-G2 ENCSR108MKR.MNX1.Hep-G2 171 bp overlap
ChIP HepG2 ENCFF938KYA 450 bp overlap
MTA1 1 dataset
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 188 bp overlap
MYBL2 2 datasets
ChIP Hep-G2 ENCSR581KCO.MYBL2.Hep-G2 249 bp overlap
ChIP HepG2 ENCFF650QJC 414 bp overlap
NCOA2 1 dataset
ChIP HepG2 ENCFF853BJJ 330 bp overlap
NR2C2 2 datasets
ChIP Hep-G2 ENCSR559ZKI.NR2C2.Hep-G2 215 bp overlap
ChIP HepG2 ENCFF944PRH 415 bp overlap
NR2F1 1 dataset
ChIP HepG2 ENCFF953UJL 299 bp overlap
NR2F6 3 datasets
ChIP Hep-G2 ENCSR518WPL.NR2F6.Hep-G2 315 bp overlap
ChIP HepG2 ENCFF429VKC 347 bp overlap
ChIP HepG2 ENCFF514UJI 299 bp overlap
NR5A1 2 datasets
ChIP Hep-G2 ENCSR310OZS.NR5A1.Hep-G2 347 bp overlap
ChIP HepG2 ENCFF970YZO 180 bp overlap
PATZ1 1 dataset
ChIP HepG2 ENCFF723PFC 401 bp overlap
PAXIP1 2 datasets
ChIP Hep-G2 ENCSR530ARJ.PAXIP1.Hep-G2 376 bp overlap
ChIP HepG2 ENCFF526NOJ 394 bp overlap
PHF21A 1 dataset
ChIP HepG2 ENCFF525EUW 444 bp overlap
PITX1 1 dataset
ChIP HepG2 ENCFF468QTQ 368 bp overlap
POU2F1 1 dataset
ChIP HepG2 ENCFF422JZU 462 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 405 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 451 bp overlap
PROX1 1 dataset
ChIP HepG2 ENCFF016ZJS 412 bp overlap
RAD21 1 dataset
ChIP HepG2 ENCFF360ZSW 217 bp overlap
RARA 1 dataset
ChIP HepG2 ENCFF582XUA 200 bp overlap
RXRA 4 datasets
ChIP Hep-G2 ENCSR000BHU.RXRA.Hep-G2 280 bp overlap
ChIP HepG2 ENCFF204YVO 277 bp overlap
ChIP HepG2 ENCFF763IEA 213 bp overlap
ChIP liver ENCFF077DAP 344 bp overlap
RXRB 1 dataset
ChIP HepG2 ENCFF539ZAY 142 bp overlap
SALL1 1 dataset
ChIP HepG2 ENCFF426MCK 378 bp overlap
SAP130 1 dataset
ChIP HepG2 ENCFF892EHZ 414 bp overlap
SIX1 1 dataset
ChIP Hep-G2 ENCSR561BQM.SIX1.Hep-G2 125 bp overlap
SKI 1 dataset
ChIP Hep-G2 ENCSR754MUD.SKI.Hep-G2 330 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 383 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 328 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 428 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 333 bp overlap
SMAD3 1 dataset
ChIP Hep-G2 ENCSR005GZH.SMAD3.Hep-G2 199 bp overlap
SMAD4 2 datasets
ChIP Caco-2 GSE112946.SMAD4.Caco-2 214 bp overlap
ChIP HepG2 ENCFF615GTE 158 bp overlap
SNAI1 1 dataset
ChIP HepG2 ENCFF017SIW 462 bp overlap
SOX13 1 dataset
ChIP HepG2 ENCFF062VSQ 338 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 381 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 416 bp overlap
SOX6 2 datasets
ChIP Hep-G2 ENCSR766TSU.SOX6.Hep-G2 325 bp overlap
ChIP HepG2 ENCFF767OCK 442 bp overlap
SP1 1 dataset
ChIP HepG2 ENCFF123KAM 292 bp overlap
SP5 1 dataset
ChIP Hep-G2 ENCSR019NPF.SP5.Hep-G2 189 bp overlap
SPEN 1 dataset
ChIP HepG2 ENCFF939VPY 337 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 247 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 239 bp overlap
TBX2 2 datasets
ChIP Hep-G2 ENCSR410FEH.TBX2.Hep-G2 322 bp overlap
ChIP HepG2 ENCFF811TLA 462 bp overlap
TCF7L2 2 datasets
ChIP Hep-G2 ENCSR346BOD.TCF7L2.Hep-G2 228 bp overlap
ChIP HepG2 ENCFF510OLG 348 bp overlap
TEAD3 1 dataset
ChIP HepG2 ENCFF054UUL 354 bp overlap
TFAP4 3 datasets
ChIP Hep-G2 ENCSR103SZL.TFAP4.Hep-G2 197 bp overlap
ChIP HepG2 ENCFF030SRU 328 bp overlap
ChIP HepG2 ENCFF932XOY 333 bp overlap
TFE3 1 dataset
ChIP Hep-G2 ENCSR589SNT.TFE3.Hep-G2 177 bp overlap
THRA 1 dataset
ChIP HepG2 ENCFF025KMX 135 bp overlap
THRB 2 datasets
ChIP Hep-G2 ENCSR430JGJ.THRB.Hep-G2 278 bp overlap
ChIP HepG2 ENCFF476INC 190 bp overlap
ZBED4 1 dataset
ChIP Hep-G2 ENCSR409PMR.ZBED4.Hep-G2 162 bp overlap
ZFHX3 2 datasets
ChIP HepG2 ENCFF082SJV 392 bp overlap
ChIP HepG2 ENCFF082SJV 163 bp overlap
ZFX 1 dataset
ChIP HepG2 ENCFF016NZF 462 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 287 bp overlap
ZMYM3 1 dataset
ChIP HepG2 ENCFF408KTI 359 bp overlap
ZNF217 2 datasets
ChIP Hep-G2 ENCSR055FQB.ZNF217.Hep-G2 374 bp overlap
ChIP HepG2 ENCFF455XGO 422 bp overlap
ZNF264 2 datasets
ChIP Hep-G2 ENCSR248BVU.ZNF264.Hep-G2 240 bp overlap
ChIP HepG2 ENCFF453WJV 326 bp overlap
ZNF280D 1 dataset
ChIP HepG2 ENCFF203BIA 382 bp overlap
ZNF331 1 dataset
ChIP HepG2 ENCFF842SZN 286 bp overlap
ZNF350 1 dataset
ChIP HepG2 ENCFF595LWL 442 bp overlap
ZNF460 1 dataset
ChIP HepG2 ENCFF007NNM 286 bp overlap
ZNF697 1 dataset
ChIP HepG2 ENCFF153LJW 285 bp overlap