chr15 : 75,195,479 75,195,740
261 bp 122 TFs 1 linked gene
This 261 bp open chromatin element is linked to C15orf39 and is bound by 122 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
C15orf39 6.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr15:75,190,479 – 75,200,740
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
122 transcription factors
Source
Cell type
AGO1 2 datasets
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 261 bp overlap
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 261 bp overlap
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 261 bp overlap
ARNTL 1 dataset
ChIP NSC_hNP1 GSE134972.ARNTL.NSC_hNP1 192 bp overlap
ASCL1 3 datasets
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 135 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 96 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 140 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 121 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 163 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 129 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 193 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 261 bp overlap
BRD4 9 datasets
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 261 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 202 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 261 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 261 bp overlap
ChIP hESC GSE33281.BRD4.hESC 65 bp overlap
ChIP retina_AB1-FW13 GSE86981.BRD4.retina_AB1-FW13 76 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 201 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 256 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 228 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 208 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 165 bp overlap
CHD1 1 dataset
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 68 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 261 bp overlap
CREB1 2 datasets
ChIP H1 ENCFF955PMP 261 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 199 bp overlap
CTCF 5 datasets
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 109 bp overlap
ChIP esophagus_muscularis-mucosa ENCSR074SFL.CTCF.esophagus_muscularis-mucosa 214 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 224 bp overlap
ChIP neural cell ENCFF335ADI 261 bp overlap
ChIP neural cell ENCFF335ADI 261 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 261 bp overlap
ChIP H1 ENCFF785DWK 117 bp overlap
EBF1 1 dataset
ChIP GM12878 ENCFF813OXE 257 bp overlap
EGR1 3 datasets
ChIP H1 ENCFF451BLH 251 bp overlap
ChIP Ishikawa ENCFF550FKT 261 bp overlap
ChIP Ishikawa ENCSR000BSQ.EGR1.Ishikawa 108 bp overlap
ERG 2 datasets
ChIP AMLPZ12 GSE23730.ERG.AMLPZ12 89 bp overlap
ChIP MCF-7 GSE23730.ERG.MCF-7 245 bp overlap
ESR1 18 datasets
ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 191 bp overlap
ChIP Ishikawa ENCSR000BKL.ESR1.Ishikawa 261 bp overlap
ChIP Ishikawa GSE109891.ESR1.Ishikawa 177 bp overlap
ChIP Ishikawa ENCSR000BIZ.ESR1.Ishikawa 228 bp overlap
ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 159 bp overlap
ChIP Ishikawa_C1-12 GSE147141.ESR1.Ishikawa_C1-12 224 bp overlap
ChIP Ishikawa_C2-14 GSE147141.ESR1.Ishikawa_C2-14 221 bp overlap
ChIP Ishikawa_C2-3 GSE147141.ESR1.Ishikawa_C2-3 245 bp overlap
ChIP Ishikawa_DMSO GSE132426.ESR1.Ishikawa_DMSO 261 bp overlap
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 261 bp overlap
ChIP Ishikawa_Dex_E2 GSE109891.ESR1.Ishikawa_Dex_E2 171 bp overlap
ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 261 bp overlap
ChIP Ishikawa_E2 GSE109891.ESR1.Ishikawa_E2 171 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 261 bp overlap
ChIP Ishikawa_E2_clone2 GSE132426.ESR1.Ishikawa_E2_clone2 261 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 240 bp overlap
ChIP Ishikawa_ETV4-OE GSE129803.ESR1.Ishikawa_ETV4-OE 261 bp overlap
ChIP Ishikawa_M2-3 GSE147141.ESR1.Ishikawa_M2-3 216 bp overlap
FEZF1 2 datasets
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 219 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 149 bp overlap
FLI1 1 dataset
ChIP UAE_ZINC GSE23730.FLI1.UAE_ZINC 233 bp overlap
FOXO1 1 dataset
ChIP CD34 GSE80773.FOXO1.CD34 79 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 261 bp overlap
GLIS2 2 datasets
ChIP HEK293 ENCFF446EIF 201 bp overlap
ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 261 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 261 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 229 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 251 bp overlap
HCFC1R1 1 dataset
ChIP cartilage GSE100311.HCFC1R1.cartilage 249 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF353UJQ 104 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 89 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 261 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 203 bp overlap
JUN 4 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 235 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 81 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 261 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 101 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B0_SHLSD18A GSE58258.KDM1A.SH-SY5Y_B0_SHLSD18A 147 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 106 bp overlap
KLF17 2 datasets
ChIP HEK293 ENCFF658MHR 54 bp overlap
ChIP HEK293 ENCSR065WUF.KLF17.HEK293 261 bp overlap
KLF3 1 dataset
Motif DE_12h DE_12h-KLF3_MA1516.2 10 bp overlap
KLF5 1 dataset
ChIP HEK293_E419K GSE88976.KLF5.HEK293_E419K 201 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 121 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 103 bp overlap
MAX 4 datasets
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 134 bp overlap
ChIP NCI-H128 GSE41105.MAX.NCI-H128 145 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 261 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 261 bp overlap
MAZ 3 datasets
ChIP HEK293 GSE76494.MAZ.HEK293 234 bp overlap
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 246 bp overlap
ChIP IMR-90 ENCSR000EFF.MAZ.IMR-90 192 bp overlap
MED 1 dataset
ChIP SEM GSE83671.MED.SEM 194 bp overlap
MTA1 1 dataset
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 261 bp overlap
MTA2 2 datasets
ChIP RH4 GSE155861.MTA2.RH4 117 bp overlap
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 219 bp overlap
MXI1 4 datasets
ChIP H1 ENCFF963FZS 261 bp overlap
ChIP SK-N-SH ENCFF746HVJ 261 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 229 bp overlap
ChIP WA01 ENCSR000EBR.MXI1.WA01 203 bp overlap
MYB 1 dataset
ChIP MOLT-3 GSE59657.MYB.MOLT-3 148 bp overlap
MYC 4 datasets
ChIP NCI-H128 GSE41105.MYC.NCI-H128 205 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 261 bp overlap
ChIP P493-6_Dpy30-shRNA GSE101853.MYC.P493-6_Dpy30-shRNA 187 bp overlap
ChIP P493-6_scramble-shRNA GSE101853.MYC.P493-6_scramble-shRNA 54 bp overlap
MYCN 5 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 196 bp overlap
ChIP Kelly GSE94782.MYCN.Kelly 173 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 215 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 221 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 116 bp overlap
MYNN 2 datasets
ChIP HEK293 ENCFF897QZG 261 bp overlap
ChIP HEK293 ENCSR707BNG.MYNN.HEK293 261 bp overlap
MYOCD 1 dataset
ChIP A-549 GSE128921.MYOCD.A-549 67 bp overlap
MYOD1 1 dataset
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 261 bp overlap
NANOG 3 datasets
ChIP H1 ENCFF747ZPQ 219 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 255 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 237 bp overlap
NCAPH2 1 dataset
ChIP HEK293 GSE97540.NCAPH2.HEK293 261 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 184 bp overlap
NFIC 2 datasets
ChIP Ishikawa ENCFF029AAD 261 bp overlap
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 261 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 169 bp overlap
OGG1 4 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 261 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 261 bp overlap
ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 175 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 261 bp overlap
OLIG2 1 dataset
ChIP brain-prefrontal-cortex_2018006 GSE129039.OLIG2.brain-prefrontal-cortex_2018006 72 bp overlap
OSR2 1 dataset
ChIP HEK293 GSE76494.OSR2.HEK293 195 bp overlap
PATZ1 3 datasets
ChIP HEK293 ENCFF016MNJ 261 bp overlap
ChIP HEK293 ENCFF016MNJ 131 bp overlap
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 261 bp overlap
PAX5 2 datasets
ChIP GM12878 ENCSR000BHD.PAX5.GM12878 98 bp overlap
ChIP NALM-6 GSE126300.PAX5.NALM-6 153 bp overlap
PBX1 1 dataset
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 188 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 261 bp overlap
PDX1 3 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 261 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 261 bp overlap
ChIP islet ERP001456.PDX1.islet 186 bp overlap
POLR2A 3 datasets
ChIP body of pancreas ENCFF675RCN 261 bp overlap
ChIP neural cell ENCFF604SPB 247 bp overlap
ChIP upper lobe of left lung ENCFF640VPA 261 bp overlap
POU5F1 2 datasets
ChIP BG03 GSE21614.POU5F1.BG03 261 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 201 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 261 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 54 bp overlap
RAD21 2 datasets
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 113 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 150 bp overlap
RARA 1 dataset
ChIP TSU-1621MT GSE60477.RARA.TSU-1621MT 204 bp overlap
RBBP5 2 datasets
ChIP WA01 ENCSR000AQC.RBBP5.WA01 162 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 57 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 158 bp overlap
RFX1 5 datasets
ChIP K-562 ENCSR041AXL.RFX1.K-562 261 bp overlap
ChIP K-562 ENCSR968GIB.RFX1.K-562 261 bp overlap
ChIP K562 ENCFF809XVG 261 bp overlap
ChIP MCF-7 ENCFF782EZS 261 bp overlap
ChIP MCF-7 ENCSR066TET.RFX1.MCF-7 238 bp overlap
RORC 1 dataset
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 261 bp overlap
RUNX1 1 dataset
ChIP AML GSE111821.RUNX1.AML 241 bp overlap
RUNX2 1 dataset
ChIP Karpas-45 GSE151819.RUNX2.Karpas-45 139 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 261 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 261 bp overlap
SIN3A 5 datasets
ChIP H1 ENCFF042ZSL 174 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 261 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 125 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 213 bp overlap
ChIP hiPSC_IID12 GSE106870.SIN3A.hiPSC_IID12 260 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 261 bp overlap
SMARCA4 2 datasets
ChIP NGP GSE134626.SMARCA4.NGP 178 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 205 bp overlap
SP1 1 dataset
ChIP HEK293 GSE76494.SP1.HEK293 98 bp overlap
SP2 3 datasets
ChIP HEK293 ENCFF181QXT 235 bp overlap
ChIP HEK293 ENCSR807LQP.SP2.HEK293 261 bp overlap
ChIP HEK293 GSE76494.SP2.HEK293 213 bp overlap
SP7 1 dataset
ChIP HEK293 ENCFF733RBE 170 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 261 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 135 bp overlap
SS18 2 datasets
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 109 bp overlap
ChIP SYO-1 GSE108025.SS18.SYO-1 80 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 135 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 261 bp overlap
SUZ12 1 dataset
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 201 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 176 bp overlap
TAF15 3 datasets
ChIP Hep-G2 ENCSR825MZS.TAF15.Hep-G2 211 bp overlap
ChIP Hep-G2 GSE120104.TAF15.Hep-G2 211 bp overlap
ChIP K-562 ENCSR047LSJ.TAF15.K-562 195 bp overlap
TCF12 3 datasets
ChIP Ishikawa ENCFF467DDW 261 bp overlap
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 261 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 92 bp overlap
TCF3 3 datasets
ChIP GM12878 ENCSR000BQT.TCF3.GM12878 179 bp overlap
ChIP NPC GSE154479.TCF3.NPC 261 bp overlap
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 239 bp overlap
TCF4 1 dataset
ChIP CAL-1 GSE76147.TCF4.CAL-1 95 bp overlap
TFAP2B 1 dataset
Motif DE_12h DE_12h-TFAP2B_MA0811.2 11 bp overlap
TFAP2C 1 dataset
Motif DE_12h DE_12h-TFAP2C_MA0524.3 11 bp overlap
TFIIIC 1 dataset
ChIP HEK293 GSE119418.TFIIIC.HEK293 236 bp overlap
TRIM28 1 dataset
ChIP HCT-116 GSE72622.TRIM28.HCT-116 232 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 242 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 242 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 260 bp overlap
ZBTB10 2 datasets
ChIP HEK293 ENCFF679BCK 168 bp overlap
ChIP HEK293 ENCSR004PLU.ZBTB10.HEK293 215 bp overlap
ZBTB20 2 datasets
ChIP HEK293 ENCFF524ADK 134 bp overlap
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 138 bp overlap
ZBTB21 1 dataset
ChIP WTC11 ENCFF677ZYY 261 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 212 bp overlap
ZBTB6 1 dataset
Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap
ZBTB7A 2 datasets
ChIP Ishikawa ENCSR000BSZ.ZBTB7A.Ishikawa 261 bp overlap
ChIP VCaP_CSS GSE123089.ZBTB7A.VCaP_CSS 261 bp overlap
ZBTB8A 3 datasets
ChIP HEK293 ENCFF303WRD 200 bp overlap
ChIP HEK293 ENCFF303WRD 261 bp overlap
ChIP HEK293 ENCSR481FEC.ZBTB8A.HEK293 92 bp overlap
ZEB1 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 134 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 261 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 261 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 261 bp overlap
ZNF341 3 datasets
ChIP HEK293 ENCFF944VMC 224 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 261 bp overlap
ChIP HEK293 GSE76494.ZNF341.HEK293 245 bp overlap
ZNF554 1 dataset
ChIP HEK293 GSE76494.ZNF554.HEK293 240 bp overlap
ZNF682 1 dataset
Motif DE_12h DE_12h-ZNF682_MA1599.2 11 bp overlap
ZNF687 2 datasets
ChIP HepG2 ENCFF653WIX 261 bp overlap
ChIP HepG2 ENCFF653WIX 116 bp overlap
ZNF90 1 dataset
ChIP HEK293T GSE78099.ZNF90.HEK293T 224 bp overlap