chr14 : 39,181,460 39,181,952
492 bp 107 TFs 2 linked genes
This 492 bp open chromatin element is linked to PNN-AS1 and PNN and is bound by 107 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
PNN-AS1 5.6 kb Proximal Proximity
PNN 6.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr14:39,176,460 – 39,186,952
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
107 transcription factors
Source
Cell type
ARID2 2 datasets
ChIP Aska-SS_shSSX GSE108025.ARID2.Aska-SS_shSSX 218 bp overlap
ChIP HepG2 ENCFF317ZHO 315 bp overlap
ARNT 2 datasets
ChIP K-562 ENCSR155KHM.ARNT.K-562 265 bp overlap
ChIP RCC4 GSE85352.ARNT.RCC4 399 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 186 bp overlap
BACH1 1 dataset
ChIP GM12878 ENCSR636MKU.BACH1.GM12878 333 bp overlap
BCLAF1 2 datasets
ChIP K-562 ENCSR492LTS.BCLAF1.K-562 331 bp overlap
ChIP K-562 ENCSR000BKH.BCLAF1.K-562 156 bp overlap
BCOR 1 dataset
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 108 bp overlap
BRCA1 1 dataset
ChIP HeLa-S3 ENCFF218GPC 131 bp overlap
BRD1 1 dataset
ChIP RKO GSE47190.BRD1.RKO 74 bp overlap
BRD4 4 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 276 bp overlap
ChIP MPNST_PDJQ GSE62499.BRD4.MPNST_PDJQ 105 bp overlap
ChIP MPNST_PDJQ GSE62499.BRD4.MPNST_PDJQ 247 bp overlap
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 134 bp overlap
CHD1 2 datasets
ChIP WA01 ENCSR000AQK.CHD1.WA01 92 bp overlap
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 284 bp overlap
CHD8 1 dataset
ChIP T-47D GSE62428.CHD8.T-47D 162 bp overlap
CREB1 1 dataset
ChIP Hep-G2 ENCSR000BVL.CREB1.Hep-G2 168 bp overlap
CTCF 3 datasets
ChIP DND41 ENCSR000AQU.CTCF.DND41 157 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 121 bp overlap
ChIP skin_lower-leg ENCSR252XWG.CTCF.skin_lower-leg 125 bp overlap
E2F8 3 datasets
ChIP GM12878 ENCSR793HVL.E2F8.GM12878 430 bp overlap
ChIP K-562 ENCSR953DVM.E2F8.K-562 492 bp overlap
ChIP K562 ENCFF985IKY 460 bp overlap
E4F1 3 datasets
ChIP GM12878 ENCFF007QKJ 295 bp overlap
ChIP GM12878 ENCFF007QKJ 369 bp overlap
ChIP GM12878 ENCSR439WAF.E4F1.GM12878 367 bp overlap
EBF1 1 dataset
ChIP LCL GSE75503.EBF1.LCL 296 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 179 bp overlap
EP300 1 dataset
ChIP HepG2 ENCFF076TMZ 312 bp overlap
ESR1 1 dataset
ChIP MCF-7_IL1b-ICI GSE67295.ESR1.MCF-7_IL1b-ICI 158 bp overlap
ESRRA 1 dataset
ChIP HepG2 ENCFF033DVS 102 bp overlap
ETS1 1 dataset
ChIP OVCAR-8 GSE101832.ETS1.OVCAR-8 176 bp overlap
EWSR1 2 datasets
ChIP K-562 ENCSR142YYA.EWSR1.K-562 73 bp overlap
ChIP K562 ENCFF361XQZ 64 bp overlap
EZH1 1 dataset
ChIP ProEs_SHEZH2 GSE59087.EZH1.ProEs_SHEZH2 167 bp overlap
FOXP1 1 dataset
ChIP LNCaP GSE62492.FOXP1.LNCaP 365 bp overlap
GABPB1 1 dataset
ChIP WTC11 ENCFF166QKI 81 bp overlap
GATA3 1 dataset
ChIP T-47D GSE51274.GATA3.T-47D 214 bp overlap
GATA3_Nter 2 datasets
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 208 bp overlap
ChIP T-47D_flp-ctrl GSE99479.GATA3_Nter.T-47D_flp-ctrl 115 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 429 bp overlap
ChIP DE DE-GATA4-2 492 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 492 bp overlap
ChIP DE DE-GATA6-2 492 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 296 bp overlap
HBP1 1 dataset
ChIP K562 ENCFF882TEV 305 bp overlap
HNF4A 1 dataset
ChIP GP5D GSE51234.HNF4A.GP5D 247 bp overlap
HNRNPH1 2 datasets
ChIP Hep-G2 ENCSR066FXN.HNRNPH1.Hep-G2 123 bp overlap
ChIP Hep-G2 GSE120104.HNRNPH1.Hep-G2 153 bp overlap
HOXA10 1 dataset
ChIP HepG2 ENCFF422LBU 361 bp overlap
HOXA7 1 dataset
ChIP A-549 ENCSR402OYZ.HOXA7.A-549 432 bp overlap
IFNA1 2 datasets
ChIP Huh-7_GFP GSE110511.IFNA1.Huh-7_GFP 176 bp overlap
ChIP Huh-7_GFP GSE110511.IFNA1.Huh-7_GFP 255 bp overlap
IKZF1 1 dataset
ChIP Hep-G2 ENCSR278JQG.IKZF1.Hep-G2 219 bp overlap
ILF3 1 dataset
ChIP K-562 ENCSR632TJQ.ILF3.K-562 341 bp overlap
IRF4 2 datasets
ChIP NCI-H929 GSE56857.IRF4.NCI-H929 88 bp overlap
ChIP NCI-H929 GSE142493.IRF4.NCI-H929 70 bp overlap
IRF5 1 dataset
ChIP GM12878 ENCSR976TBC.IRF5.GM12878 212 bp overlap
JUNB 2 datasets
ChIP HepG2 ENCFF133OUQ 282 bp overlap
ChIP Karpas-299 GSE151413.JUNB.Karpas-299 319 bp overlap
KMT2A 1 dataset
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 110 bp overlap
MAF1 2 datasets
ChIP HepG2 ENCFF925PQA 110 bp overlap
ChIP HepG2 ENCFF925PQA 383 bp overlap
MEN1 1 dataset
ChIP RS4-11_DMSO-D3-180110 GSE127507.MEN1.RS4-11_DMSO-D3-180110 147 bp overlap
MLLT1 3 datasets
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 164 bp overlap
ChIP K-562 ENCSR107GRP.MLLT1.K-562 293 bp overlap
ChIP K-562 ENCSR675LRO.MLLT1.K-562 63 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 492 bp overlap
MYNN 1 dataset
ChIP K-562 ENCSR737LTZ.MYNN.K-562 467 bp overlap
NANOG 1 dataset
ChIP LNCaP_pNanog1_Dox GSE74799.NANOG.LNCaP_pNanog1_Dox 153 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 235 bp overlap
NCOA2 2 datasets
ChIP HepG2 ENCFF853BJJ 427 bp overlap
ChIP HepG2 ENCFF853BJJ 209 bp overlap
NCOA3 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA3.MCF-7_E2 169 bp overlap
NEUROD1 3 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 263 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 236 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 180 bp overlap
NFATC1 2 datasets
ChIP GM12878 ENCSR000BQL.NFATC1.GM12878 194 bp overlap
ChIP GM12878 ENCSR000BQL.NFATC1.GM12878 186 bp overlap
NFIC 1 dataset
ChIP K-562 ENCSR796ITY.NFIC.K-562 221 bp overlap
NFRKB 2 datasets
ChIP HEK293T ENCSR997GPO.NFRKB.HEK293T 244 bp overlap
ChIP HepG2 ENCFF930CVC 113 bp overlap
NR0B2 1 dataset
ChIP HepG2 ENCFF071MVY 58 bp overlap
NR2F1 1 dataset
ChIP HepG2 ENCFF518ZRY 397 bp overlap
NR2F2 2 datasets
ChIP K-562 ENCSR000BRS.NR2F2.K-562 145 bp overlap
ChIP K-562 ENCSR000BRS.NR2F2.K-562 241 bp overlap
OSR2 3 datasets
ChIP HEK293 ENCFF875BDB 287 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 353 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 233 bp overlap
PML 3 datasets
ChIP GM12878 ENCFF160JQZ 108 bp overlap
ChIP GM12878 ENCSR000BQM.PML.GM12878 217 bp overlap
ChIP K-562 ENCSR000BQY.PML.K-562 492 bp overlap
POGK 1 dataset
ChIP HepG2 ENCFF029WNT 310 bp overlap
POLR2A 36 datasets
ChIP A549 ENCFF034EBG 292 bp overlap
ChIP GM12878 ENCFF263VRI 308 bp overlap
ChIP GM12878 ENCFF412KAE 492 bp overlap
ChIP GM12878 ENCFF521FXC 268 bp overlap
ChIP GM12891 ENCFF012SUT 476 bp overlap
ChIP GM12891 ENCFF127ICP 223 bp overlap
ChIP GM12891 ENCFF379FCI 274 bp overlap
ChIP GM12892 ENCFF245LYF 52 bp overlap
ChIP GM12892 ENCFF245LYF 268 bp overlap
ChIP GM12892 ENCFF542ZFO 90 bp overlap
ChIP GM12892 ENCFF542ZFO 214 bp overlap
ChIP GM18526 ENCFF599EPS 261 bp overlap
ChIP GM19099 ENCFF726IBN 263 bp overlap
ChIP H1 ENCFF566JSR 148 bp overlap
ChIP H1 ENCFF770YBQ 290 bp overlap
ChIP H1 ENCFF833NJP 224 bp overlap
ChIP HL-60 ENCFF321XKE 332 bp overlap
ChIP HeLa-S3 ENCFF045HUU 327 bp overlap
ChIP HeLa-S3 ENCFF224LWS 360 bp overlap
ChIP HeLa-S3 ENCFF224LWS 118 bp overlap
ChIP HeLa-S3 ENCFF773DNG 205 bp overlap
ChIP HepG2 ENCFF252NAR 85 bp overlap
ChIP HepG2 ENCFF422YUC 269 bp overlap
ChIP HepG2 ENCFF718XAJ 235 bp overlap
ChIP HepG2 ENCFF736SLT 245 bp overlap
ChIP IMR-90 ENCFF672YWV 151 bp overlap
ChIP K562 ENCFF214YGX 279 bp overlap
ChIP K562 ENCFF215CWW 492 bp overlap
ChIP K562 ENCFF262YXJ 435 bp overlap
ChIP K562 ENCFF643HGX 188 bp overlap
ChIP NB4 ENCFF780KAX 203 bp overlap
ChIP erythroblast ENCFF498VMR 403 bp overlap
ChIP erythroblast ENCFF498VMR 492 bp overlap
ChIP gastroesophageal sphincter ENCFF043KAM 119 bp overlap
ChIP gastroesophageal sphincter ENCFF043KAM 319 bp overlap
ChIP spleen ENCFF044PYR 184 bp overlap
POLR2B 2 datasets
ChIP K562 ENCFF513ENO 392 bp overlap
ChIP K562 ENCFF513ENO 397 bp overlap
POLR2G 2 datasets
ChIP HepG2 ENCFF241AEG 464 bp overlap
ChIP HepG2 ENCFF508UTS 459 bp overlap
PPARG 1 dataset
ChIP HUVEC-C_PPARG_HYPO GSE50144.PPARG.HUVEC-C_PPARG_HYPO 128 bp overlap
PRDM15 1 dataset
ChIP HepG2 ENCFF259LUZ 472 bp overlap
PRPF4 3 datasets
ChIP Hep-G2 GSE120104.PRPF4.Hep-G2 288 bp overlap
ChIP Hep-G2 ENCSR243LNQ.PRPF4.Hep-G2 280 bp overlap
ChIP HepG2 ENCFF645WCL 341 bp overlap
RAD21 1 dataset
ChIP HepG2 ENCFF916QGM 381 bp overlap
RBFOX2 8 datasets
ChIP HepG2 ENCFF554DMZ 391 bp overlap
ChIP HepG2 ENCFF939HTZ 391 bp overlap
ChIP K-562 GSE120104.RBFOX2.K-562 60 bp overlap
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 63 bp overlap
ChIP K562 ENCFF196WTG 234 bp overlap
ChIP K562 ENCFF196WTG 234 bp overlap
ChIP K562 ENCFF967GRF 234 bp overlap
ChIP K562 ENCFF967GRF 184 bp overlap
RBM22 2 datasets
ChIP HepG2 ENCFF292RVQ 322 bp overlap
ChIP HepG2 ENCFF561IAJ 316 bp overlap
RELA 1 dataset
ChIP HDF_NUTLIN GSE77225.RELA.HDF_NUTLIN 424 bp overlap
REPIN1 1 dataset
ChIP HepG2 ENCFF598VSY 225 bp overlap
RXR 1 dataset
ChIP macrophage ERP008801.RXR.macrophage 263 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 375 bp overlap
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 185 bp overlap
SMAD3 1 dataset
ChIP H69_4TGF GSE145250.SMAD3.H69_4TGF 172 bp overlap
SMAD5 4 datasets
ChIP GM12878 ENCSR251OVJ.SMAD5.GM12878 150 bp overlap
ChIP GM12878 ENCSR251OVJ.SMAD5.GM12878 156 bp overlap
ChIP K-562 ENCSR000FCD.SMAD5.K-562 492 bp overlap
ChIP K562 ENCFF941FJJ 441 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d6 210 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_shSNAI2 GSE137168.SNAI2.SMS-CTR_shSNAI2 207 bp overlap
SOX13 1 dataset
ChIP HepG2 ENCFF709SIA 297 bp overlap
SP1 1 dataset
ChIP HepG2 ENCFF127UXF 271 bp overlap
SRSF4 1 dataset
ChIP Hep-G2 GSE120104.SRSF4.Hep-G2 290 bp overlap
SSRP1 1 dataset
ChIP Hep-G2 ENCSR571PDN.SSRP1.Hep-G2 199 bp overlap
SUPT5H 2 datasets
ChIP HEK293_PNUTS GSE134198.SUPT5H.HEK293_PNUTS 252 bp overlap
ChIP K562 ENCFF902PAW 492 bp overlap
SUPT6H 1 dataset
ChIP HCT-116 GSE130509.SUPT6H.HCT-116 492 bp overlap
TCF12 2 datasets
ChIP Hep-G2 ENCSR000BJG.TCF12.Hep-G2 113 bp overlap
ChIP K-562 ENCSR189TRZ.TCF12.K-562 120 bp overlap
TCF4 1 dataset
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 131 bp overlap
TEAD3 1 dataset
ChIP HepG2 ENCFF054UUL 364 bp overlap
THRB 1 dataset
ChIP K562 ENCFF620NFN 291 bp overlap
TMF1 1 dataset
ChIP HepG2 ENCFF605HHR 225 bp overlap
TOP1 2 datasets
ChIP LNCaP GSE63202.TOP1.LNCaP 193 bp overlap
ChIP LNCaP_DHT GSE63202.TOP1.LNCaP_DHT 117 bp overlap
YY1 1 dataset
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 356 bp overlap
ZBTB40 3 datasets
ChIP Hep-G2 ENCSR525YFS.ZBTB40.Hep-G2 209 bp overlap
ChIP HepG2 ENCFF162FPR 202 bp overlap
ChIP HepG2 ENCFF162FPR 325 bp overlap
ZIK1 1 dataset
ChIP HepG2 ENCFF031XIP 366 bp overlap
ZNF10 2 datasets
ChIP HEK293 ENCFF611ZJI 159 bp overlap
ChIP HEK293 ENCSR019WUS.ZNF10.HEK293 217 bp overlap
ZNF134 1 dataset
ChIP HEK293 GSE76494.ZNF134.HEK293 142 bp overlap
ZNF135 1 dataset
ChIP HEK293T GSE78099.ZNF135.HEK293T 145 bp overlap
ZNF146 1 dataset
ChIP HepG2 ENCFF383YDA 220 bp overlap
ZNF24 3 datasets
ChIP HepG2 ENCFF357JVV 191 bp overlap
ChIP HepG2 ENCFF361LZL 136 bp overlap
ChIP K-562 ENCSR695EQB.ZNF24.K-562 363 bp overlap
ZNF253 1 dataset
ChIP K562 ENCFF156RAD 82 bp overlap
ZNF34 1 dataset
ChIP HepG2 ENCFF739BBD 318 bp overlap
ZNF354B 1 dataset
ChIP HepG2 ENCFF455UYM 80 bp overlap
ZNF576 1 dataset
ChIP HepG2 ENCFF157BAG 152 bp overlap
ZNF616 1 dataset
ChIP HepG2 ENCFF837QVX 283 bp overlap
ZSCAN5A 1 dataset
ChIP HepG2 ENCFF633DFI 272 bp overlap