This gene encodes a multifunctional protein that is involved in various cellular processes, including gene expression, cell signaling, and RNA processing and transport. The protein includes an N-terminal transcriptional activation domain and a C-terminal RNA-binding domain. Chromosomal translocations between this gene and various genes encoding transcription factors result in the production of chimeric proteins that are involved in tumorigenesis. These chimeric proteins usually consist of the N-terminal transcriptional activation domain of this protein fused to the C-terminal DNA-binding domain of the transcription factor protein. Mutations in this gene, specifically a t(11;22)(q24;q12) translocation, are known to cause Ewing sarcoma as well as neuroectodermal and various other tumors. Alternative splicing of this gene results in multiple transcript variants. Related pseudogenes have been identified on chromosomes 1 and 14. [provided by RefSeq, Jul 2009]
Transcription factors with Perturb-seq knockdown data for EWSR1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = EWSR1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of EWSR1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr22:29,004,535–29,005,249 | 263.3 kb | Distal (>10kb) Multiome | 417 | |
| chr22:29,029,712–29,031,115 | 237.4 kb | Distal (>10kb) Multiome | 773 | |
| chr22:29,071,484–29,071,874 | 196.7 kb | Distal (>10kb) Multiome | 332 | |
| chr22:29,072,494–29,074,480 | 195.3 kb | Distal (>10kb) Multiome | 537 | |
| chr22:29,205,602–29,206,473 | 62.2 kb | Distal (>10kb) Multiome | 378 | |
| chr22:29,267,574–29,268,917 | 129 bp | At TSS Multiome | 969 | |
| chr22:29,304,664–29,307,808 | 38.6 kb | Distal (>10kb) Multiome | 839 | |
| chr22:29,313,065–29,313,784 | 45.1 kb | Distal (>10kb) Multiome | 274 | |
| chr22:29,315,074–29,316,064 | 47.3 kb | Distal (>10kb) Multiome | 242 | |
| chr22:29,388,161–29,388,971 | 120.3 kb | Distal (>10kb) Multiome | 740 | |
| chr22:29,431,916–29,432,715 | 164.0 kb | Distal (>10kb) Multiome | 14 | |
| chr22:29,470,132–29,470,844 | 202.2 kb | Distal (>10kb) Multiome | 437 | |
| chr22:29,480,003–29,481,437 | 212.8 kb | Distal (>10kb) Multiome | 384 | |
| chr22:29,553,345–29,553,988 | 285.5 kb | Distal (>10kb) Multiome | 837 |
Genomic view of the EWSR1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.