EWSR1
EWS RNA binding protein 1 | EWS

This gene encodes a multifunctional protein that is involved in various cellular processes, including gene expression, cell signaling, and RNA processing and transport. The protein includes an N-terminal transcriptional activation domain and a C-terminal RNA-binding domain. Chromosomal translocations between this gene and various genes encoding transcription factors result in the production of chimeric proteins that are involved in tumorigenesis. These chimeric proteins usually consist of the N-terminal transcriptional activation domain of this protein fused to the C-terminal DNA-binding domain of the transcription factor protein. Mutations in this gene, specifically a t(11;22)(q24;q12) translocation, are known to cause Ewing sarcoma as well as neuroectodermal and various other tumors. Alternative splicing of this gene results in multiple transcript variants. Related pseudogenes have been identified on chromosomes 1 and 14. [provided by RefSeq, Jul 2009]

Member of: DE-2
Biological processes 14 terms
Expression (TPM)
EWSR1 — as a Regulated Gene

TFs regulating EWSR1 0 TFs

Transcription factors with Perturb-seq knockdown data for EWSR1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = EWSR1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to EWSR1

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of EWSR1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr22:29,004,535–29,005,249 263.3 kb Distal (>10kb) Multiome 417
chr22:29,029,712–29,031,115 237.4 kb Distal (>10kb) Multiome 773
chr22:29,071,484–29,071,874 196.7 kb Distal (>10kb) Multiome 332
chr22:29,072,494–29,074,480 195.3 kb Distal (>10kb) Multiome 537
chr22:29,205,602–29,206,473 62.2 kb Distal (>10kb) Multiome 378
chr22:29,267,574–29,268,917 129 bp At TSS Multiome 969
chr22:29,304,664–29,307,808 38.6 kb Distal (>10kb) Multiome 839
chr22:29,313,065–29,313,784 45.1 kb Distal (>10kb) Multiome 274
chr22:29,315,074–29,316,064 47.3 kb Distal (>10kb) Multiome 242
chr22:29,388,161–29,388,971 120.3 kb Distal (>10kb) Multiome 740
chr22:29,431,916–29,432,715 164.0 kb Distal (>10kb) Multiome 14
chr22:29,470,132–29,470,844 202.2 kb Distal (>10kb) Multiome 437
chr22:29,480,003–29,481,437 212.8 kb Distal (>10kb) Multiome 384
chr22:29,553,345–29,553,988 285.5 kb Distal (>10kb) Multiome 837

Genome Browser

Genomic view of the EWSR1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr22:28,994,535 – 29,563,988
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq