Enables nuclear thyroid hormone receptor binding activity; phosphoprotein binding activity; and transcription coactivator activity. Involved in positive regulation of circadian rhythm and regulation of gene expression. Acts upstream of or within positive regulation of transcription by RNA polymerase II. Located in exon-exon junction complex and nuclear speck. Part of mediator complex. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for THRAP3. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = THRAP3 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of THRAP3, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr1:35,930,610–35,931,886 | 293.4 kb | Distal (>10kb) Multiome | 903 | |
| chr1:36,083,788–36,084,510 | 140.3 kb | Distal (>10kb) Multiome | 194 | |
| chr1:36,088,326–36,089,393 | 135.6 kb | Distal (>10kb) Multiome | 1023 | |
| chr1:36,148,864–36,150,075 | 74.9 kb | Distal (>10kb) Multiome | 925 | |
| chr1:36,150,344–36,151,320 | 73.4 kb | Distal (>10kb) Multiome | 524 | |
| chr1:36,155,033–36,157,490 | 68.4 kb | Distal (>10kb) Multiome | 790 | |
| chr1:36,166,478–36,167,190 | 57.6 kb | Distal (>10kb) Multiome | 85 | |
| chr1:36,176,148–36,176,823 | 48.0 kb | Distal (>10kb) Multiome | 141 | |
| chr1:36,178,119–36,179,461 | 45.4 kb | Distal (>10kb) Multiome | 222 | |
| chr1:36,187,827–36,188,464 | 36.2 kb | Distal (>10kb) Multiome | 572 | |
| chr1:36,223,459–36,225,047 | 126 bp | At TSS Multiome | 1017 | |
| chr1:36,305,654–36,307,599 | 82.5 kb | Distal (>10kb) Multiome | 826 | |
| chr1:36,320,781–36,321,934 | 96.9 kb | Distal (>10kb) Multiome | 522 | |
| chr1:36,322,032–36,324,527 | 99.3 kb | Distal (>10kb) Multiome | 699 | |
| chr1:36,384,603–36,387,142 | 161.6 kb | Distal (>10kb) Multiome | 1050 | |
| chr1:36,387,290–36,388,127 | 163.3 kb | Distal (>10kb) Multiome | 280 | |
| chr1:36,397,267–36,398,140 | 173.5 kb | Distal (>10kb) Multiome | 787 | |
| chr1:36,400,687–36,401,905 | 176.9 kb | Distal (>10kb) Multiome | 721 | |
| chr1:36,449,991–36,450,940 | 226.1 kb | Distal (>10kb) Multiome | 725 | |
| chr1:36,463,701–36,464,970 | 240.0 kb | Distal (>10kb) Multiome | 1027 | |
| chr1:36,481,699–36,482,274 | 257.6 kb | Distal (>10kb) Multiome | 133 |
Genomic view of the THRAP3 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.