chr12 : 93,379,761 93,380,177
416 bp 105 TFs 2 linked genes
This 416 bp open chromatin element is linked to NUDT4 and ENSG00000257252 and is bound by 105 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
NUDT4 1.9 kb Proximal Proximity
ENSG00000257252 2.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:93,374,761 – 93,385,177
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
105 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP HepG2 ENCFF237BMI 382 bp overlap
AR 3 datasets
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 267 bp overlap
ChIP prostate_1798_T GSE130408.AR.prostate_1798_T 257 bp overlap
ChIP prostate_2752_T GSE130408.AR.prostate_2752_T 173 bp overlap
ARID2 2 datasets
ChIP Aska-SS_shSSX GSE108025.ARID2.Aska-SS_shSSX 380 bp overlap
ChIP Hep-G2 GSE69566.ARID2.Hep-G2 416 bp overlap
ARID4B 2 datasets
ChIP HepG2 ENCFF519OXJ 207 bp overlap
ChIP HepG2 ENCFF519OXJ 366 bp overlap
ASH2L 1 dataset
ChIP GM12878 ENCSR849WCQ.ASH2L.GM12878 273 bp overlap
ATF3 1 dataset
ChIP K-562 ENCSR028UIU.ATF3.K-562 206 bp overlap
BCOR 1 dataset
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 161 bp overlap
BRD3 2 datasets
ChIP HEK293T GSE39579.BRD3.HEK293T 99 bp overlap
ChIP K-562_IBET151_50nM GSE120715.BRD3.K-562_IBET151_50nM 152 bp overlap
BRD4 9 datasets
ChIP HUVEC-C GSE53998.BRD4.HUVEC-C 248 bp overlap
ChIP HUVEC-C_TNF GSE53998.BRD4.HUVEC-C_TNF 394 bp overlap
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 77 bp overlap
ChIP LNCaP-clone-FGC_DHT-DMSO GSE118247.BRD4.LNCaP-clone-FGC_DHT-DMSO 66 bp overlap
ChIP PC-3_GDC-R_SAHA GSE137207.BRD4.PC-3_GDC-R_SAHA 416 bp overlap
ChIP SUM159PT_DMSO_24h GSE87418.BRD4.SUM159PT_DMSO_24h 90 bp overlap
ChIP SUM159PT_DMSO_48h GSE87418.BRD4.SUM159PT_DMSO_48h 231 bp overlap
ChIP SUM159PT_Dox_48h GSE87418.BRD4.SUM159PT_Dox_48h 165 bp overlap
ChIP SW480 GSE73319.BRD4.SW480 89 bp overlap
CEBPA 5 datasets
ChIP T-47D_progesterone GSE132649.CEBPA.T-47D_progesterone 260 bp overlap
ChIP THP-1_1-25D_24h GSE124032.CEBPA.THP-1_1-25D_24h 209 bp overlap
ChIP THP-1_1-25D_2h GSE124032.CEBPA.THP-1_1-25D_2h 99 bp overlap
ChIP THP-1_EtOH_24h GSE124032.CEBPA.THP-1_EtOH_24h 102 bp overlap
ChIP THP-1_EtOH_2h GSE124032.CEBPA.THP-1_EtOH_2h 162 bp overlap
CEBPB 6 datasets
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 330 bp overlap
ChIP HeLa-S3 ENCFF722WEG 265 bp overlap
ChIP K-562 ENCSR000BRQ.CEBPB.K-562 230 bp overlap
ChIP K-562 ENCSR000EHE.CEBPB.K-562 254 bp overlap
ChIP K562 ENCFF189VBN 271 bp overlap
ChIP K562 ENCFF584CTB 416 bp overlap
CEBPG 3 datasets
ChIP K-562 ENCSR490LWA.CEBPG.K-562 290 bp overlap
ChIP K562 ENCFF783ADE 416 bp overlap
ChIP K562 ENCFF956TPS 416 bp overlap
CLOCK 1 dataset
ChIP MCF-7 ENCSR699YFX.CLOCK.MCF-7 265 bp overlap
CREBBP 1 dataset
ChIP PC-3_GDC-resist GSE147455.CREBBP.PC-3_GDC-resist 119 bp overlap
CTCF 2 datasets
ChIP mucosa of descending colon ENCFF478SWS 163 bp overlap
ChIP mucosa of descending colon ENCFF478SWS 371 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF346MCV 280 bp overlap
ChIP BLaER1 ENCFF798NMV 251 bp overlap
DRAP1 1 dataset
ChIP Hep-G2 ENCSR765MKZ.DRAP1.Hep-G2 185 bp overlap
EHF 1 dataset
ChIP RWPE-1 GSE114241.EHF.RWPE-1 260 bp overlap
ELF1 1 dataset
ChIP Hep-G2 ENCSR321VGW.ELF1.Hep-G2 131 bp overlap
ERG 1 dataset
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 193 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 160 bp overlap
FEZF1 1 dataset
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 107 bp overlap
FOSL1 1 dataset
ChIP K-562 ENCSR239ZLZ.FOSL1.K-562 129 bp overlap
FOXA1 3 datasets
ChIP T-47D_8h GSE137579.FOXA1.T-47D_8h 125 bp overlap
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 94 bp overlap
ChIP prostate_P23_T GSE130408.FOXA1.prostate_P23_T 207 bp overlap
GATA3 1 dataset
ChIP breast_tumor_Male_21 GSE104399.GATA3.breast_tumor_Male_21 407 bp overlap
GATA6 5 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 282 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 312 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 152 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 362 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 393 bp overlap
GATAD2A 1 dataset
ChIP HepG2 ENCFF252XNH 242 bp overlap
GTF2E2 2 datasets
ChIP K562 ENCFF741URT 416 bp overlap
ChIP K562 ENCFF741URT 212 bp overlap
GZF1 1 dataset
ChIP HepG2 ENCFF060TLH 258 bp overlap
HDAC1 3 datasets
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 87 bp overlap
ChIP NB4 GSE126720.HDAC1.NB4 69 bp overlap
ChIP NB4 GSE126720.HDAC1.NB4 205 bp overlap
HDAC2 3 datasets
ChIP PC-3 GSE147455.HDAC2.PC-3 50 bp overlap
ChIP PC-3 GSE147455.HDAC2.PC-3 122 bp overlap
ChIP PC-3_GDC-resist GSE147455.HDAC2.PC-3_GDC-resist 108 bp overlap
HMBOX1 4 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 146 bp overlap
ChIP K562 ENCFF055GAZ 193 bp overlap
ChIP K562 ENCFF317JJX 188 bp overlap
ChIP K562 ENCFF317JJX 388 bp overlap
HMGXB4 2 datasets
ChIP Hep-G2 ENCSR174GOO.HMGXB4.Hep-G2 142 bp overlap
ChIP Hep-G2 ENCSR174GOO.HMGXB4.Hep-G2 163 bp overlap
HOXB13 12 datasets
ChIP G-401 GSE65381.HOXB13.G-401 396 bp overlap
ChIP LNCaP GSE56288.HOXB13.LNCaP 178 bp overlap
ChIP prostate-cancer_PDX_70 GSE130408.HOXB13.prostate-cancer_PDX_70 104 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.HOXB13.prostate-cancer_PDX_92 234 bp overlap
ChIP prostate_2484_T GSE130408.HOXB13.prostate_2484_T 273 bp overlap
ChIP prostate_P1_T GSE130408.HOXB13.prostate_P1_T 221 bp overlap
ChIP prostate_P23 GSE130408.HOXB13.prostate_P23 215 bp overlap
ChIP prostate_P23_T GSE130408.HOXB13.prostate_P23_T 377 bp overlap
ChIP prostate_P27_T GSE130408.HOXB13.prostate_P27_T 300 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 327 bp overlap
ChIP prostate_P7 GSE130408.HOXB13.prostate_P7 187 bp overlap
ChIP prostate_P7_T GSE130408.HOXB13.prostate_P7_T 416 bp overlap
HOXB8 2 datasets
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 309 bp overlap
ChIP PANC-1 GSE119930.HOXB8.PANC-1 72 bp overlap
IKZF1 3 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 222 bp overlap
ChIP K562 ENCFF348IBL 348 bp overlap
ChIP K562 ENCFF771OHZ 360 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 118 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 243 bp overlap
JUN 1 dataset
ChIP Karpas-299 GSE151413.JUN.Karpas-299 409 bp overlap
JUNB 2 datasets
ChIP CD4 GSE116695.JUNB.CD4 111 bp overlap
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 215 bp overlap
JUND 2 datasets
ChIP HT29_DSMO GSE77039.JUND.HT29_DSMO 154 bp overlap
ChIP HT29_DSMO GSE77039.JUND.HT29_DSMO 87 bp overlap
KLF6 1 dataset
ChIP Hep-G2 ENCSR757EKM.KLF6.Hep-G2 154 bp overlap
KMT2A 6 datasets
ChIP HEK293T_C-term_C49 GSE90762.KMT2A.HEK293T_C-term_C49 132 bp overlap
ChIP HEK293T_N-term_shCtrl GSE90762.KMT2A.HEK293T_N-term_shCtrl 331 bp overlap
ChIP IMS-M2_DMSO GSE129636.KMT2A.IMS-M2_DMSO 307 bp overlap
ChIP KOPN-8 GSE83671.KMT2A.KOPN-8 64 bp overlap
ChIP MV4-11 GSE83671.KMT2A.MV4-11 186 bp overlap
ChIP SHI-1 GSE95511.KMT2A.SHI-1 77 bp overlap
MAF 1 dataset
ChIP CD4_Th1 GSE72266.MAF.CD4_Th1 101 bp overlap
MAX 2 datasets
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 120 bp overlap
ChIP HepG2 ENCFF507HCX 325 bp overlap
MED1 2 datasets
ChIP cardiomyocyte GSE85628.MED1.cardiomyocyte 236 bp overlap
ChIP cardiomyocyte_1 GSE85628.MED1.cardiomyocyte_1 236 bp overlap
MEN1 1 dataset
ChIP PC-3 GSE132827.MEN1.PC-3 255 bp overlap
MIXL1 1 dataset
ChIP HepG2 ENCFF817YFO 396 bp overlap
MLLT1 2 datasets
ChIP K562 ENCFF074XRJ 156 bp overlap
ChIP K562 ENCFF871DSA 91 bp overlap
MNT 1 dataset
ChIP K562 ENCFF820IGH 55 bp overlap
MXD4 1 dataset
ChIP Hep-G2 ENCSR441KFW.MXD4.Hep-G2 87 bp overlap
MYBL2 1 dataset
ChIP Hep-G2 ENCSR581KCO.MYBL2.Hep-G2 123 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 56 bp overlap
NFATC2 4 datasets
ChIP CD4 GSE116695.NFATC2.CD4 98 bp overlap
ChIP CD4_CD28-ab GSE116695.NFATC2.CD4_CD28-ab 371 bp overlap
ChIP CD4_fly-DNA GSE116695.NFATC2.CD4_fly-DNA 398 bp overlap
ChIP CD4_fly-DNA_no-CD28 GSE116695.NFATC2.CD4_fly-DNA_no-CD28 129 bp overlap
NKX2-5 1 dataset
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 416 bp overlap
NR2C2 1 dataset
ChIP K562 ENCFF750AXF 416 bp overlap
PHF8 1 dataset
ChIP Hep-G2 ENCSR604VAE.PHF8.Hep-G2 302 bp overlap
PML 1 dataset
ChIP K-562 ENCSR000BQY.PML.K-562 176 bp overlap
POLR2A 6 datasets
ChIP K562 ENCFF137JSF 232 bp overlap
ChIP adrenal gland ENCFF843OBJ 331 bp overlap
ChIP esophagus muscularis mucosa ENCFF432ZCY 341 bp overlap
ChIP esophagus muscularis mucosa ENCFF791ZXN 192 bp overlap
ChIP gastrocnemius medialis ENCFF145VIB 416 bp overlap
ChIP gastroesophageal sphincter ENCFF238INU 94 bp overlap
PPARG 1 dataset
ChIP Hep-G2 ENCSR130VQL.PPARG.Hep-G2 184 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 325 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 388 bp overlap
PRDM4 2 datasets
ChIP HEK293 ENCFF069PHD 69 bp overlap
ChIP HEK293 ENCSR443MVV.PRDM4.HEK293 146 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 176 bp overlap
RAD21 3 datasets
ChIP GM12878 ENCFF101UQZ 58 bp overlap
ChIP IMR-90 ENCSR000EFJ.RAD21.IMR-90 121 bp overlap
ChIP SLK_CTCF-KD GSE138105.RAD21.SLK_CTCF-KD 109 bp overlap
RBFOX2 2 datasets
ChIP K562 ENCFF196WTG 162 bp overlap
ChIP K562 ENCFF967GRF 162 bp overlap
RELA 1 dataset
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 61 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 105 bp overlap
SAP130 2 datasets
ChIP HepG2 ENCFF892EHZ 208 bp overlap
ChIP HepG2 ENCFF892EHZ 197 bp overlap
SAP30 1 dataset
ChIP K562 ENCFF652WJB 149 bp overlap
SIN3A 2 datasets
ChIP K-562 ENCSR920BLG.SIN3A.K-562 142 bp overlap
ChIP PFSK-1 ENCFF218MAY 58 bp overlap
SKIL 1 dataset
ChIP GM12878 ENCSR212YKD.SKIL.GM12878 278 bp overlap
SMAD4 1 dataset
ChIP HGrC1_EV GSE138496.SMAD4.HGrC1_EV 99 bp overlap
SMARCA2 1 dataset
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 191 bp overlap
SMARCA4 7 datasets
ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 50 bp overlap
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 416 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 172 bp overlap
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 342 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 133 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 416 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 271 bp overlap
SMARCA5 2 datasets
ChIP GM12878 ENCFF327LDR 388 bp overlap
ChIP GM12878 ENCFF327LDR 262 bp overlap
SMARCC1 3 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 106 bp overlap
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 252 bp overlap
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 416 bp overlap
SOX6 1 dataset
ChIP K-562 ENCSR788RSW.SOX6.K-562 75 bp overlap
SP1 1 dataset
ChIP K562 ENCFF088XXV 416 bp overlap
SPI1 4 datasets
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 216 bp overlap
ChIP CTV-1_delA GSE128835.SPI1.CTV-1_delA 275 bp overlap
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 218 bp overlap
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 123 bp overlap
SREBP2 1 dataset
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 171 bp overlap
SS18 1 dataset
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 291 bp overlap
SUPT5H 2 datasets
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 395 bp overlap
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 58 bp overlap
TAF1 3 datasets
ChIP Hep-G2 ENCSR918OKK.TAF1.Hep-G2 203 bp overlap
ChIP HepG2 ENCFF946IUP 214 bp overlap
ChIP HepG2 ENCFF946IUP 416 bp overlap
TAF9B 1 dataset
ChIP K562 ENCFF121ZIF 175 bp overlap
TAL1 1 dataset
ChIP K562 ENCFF661CCK 277 bp overlap
TBP 3 datasets
ChIP HeLa-S3 ENCFF715NNJ 380 bp overlap
ChIP K562 ENCFF901UYM 224 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 79 bp overlap
TBX5 2 datasets
ChIP G296S_4 GSE85628.TBX5.G296S_4 239 bp overlap
ChIP cardiomyocyte_5 GSE85628.TBX5.cardiomyocyte_5 273 bp overlap
WT1 1 dataset
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 282 bp overlap
YY1 1 dataset
ChIP liver ENCFF515BWJ 322 bp overlap
ZBTB11 1 dataset
ChIP HEK293 ENCFF262GZJ 182 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 244 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 179 bp overlap
ZNF2 1 dataset
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 386 bp overlap
ZNF24 1 dataset
ChIP MCF-7 ENCFF861XIL 220 bp overlap
ZNF3 1 dataset
ChIP Hep-G2 ENCSR182QWU.ZNF3.Hep-G2 108 bp overlap
ZNF317 1 dataset
ChIP HepG2 ENCFF018ISP 403 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 416 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 314 bp overlap
ZNF449 2 datasets
ChIP HEK293 ENCFF764ZIC 235 bp overlap
ChIP HEK293 ENCSR738SLS.ZNF449.HEK293 277 bp overlap
ZNF616 1 dataset
ChIP HEK293T GSE78099.ZNF616.HEK293T 172 bp overlap