chr9 : 98,850,508 98,851,258
750 bp 114 TFs 4 linked genes
This 750 bp open chromatin element is linked to 4 target genes and is bound by 114 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
GALNT12 43.3 kb Distal Multiome
ANKS6 54.4 kb Distal Multiome
GABBR2 143.5 kb Distal Multiome
TGFBR1 254.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:98,845,508 – 98,856,258
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
114 transcription factors
Source
Cell type
ARNT 1 dataset
ChIP K-562 ENCSR613NUC.ARNT.K-562 138 bp overlap
ATF4 1 dataset
ChIP K-562 ENCSR145TSJ.ATF4.K-562 151 bp overlap
ATF7 1 dataset
ChIP K-562 ENCSR972ZBV.ATF7.K-562 143 bp overlap
BHLHE22 3 datasets
Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap
Motif DE_24h DE_24h-BHLHE22_MA1635.2 6 bp overlap
Motif DE_48h DE_48h-BHLHE22_MA1635.2 6 bp overlap
BRD2 1 dataset
ChIP K-562_DMSO GSE138084.BRD2.K-562_DMSO 136 bp overlap
BRD3 1 dataset
ChIP H-1_DE GSE126661.BRD3.H-1_DE 182 bp overlap
BRD4 5 datasets
ChIP K-562_DMSO GSE138084.BRD4.K-562_DMSO 118 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD4.K-562_DMSO-IFNG 152 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD4.K-562_DMSO-IFNG 128 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 85 bp overlap
ChIP K562 ENCFF092PWQ 64 bp overlap
BRD9 1 dataset
ChIP K-562 ENCSR177XCS.BRD9.K-562 150 bp overlap
CEBPG 1 dataset
ChIP K562 ENCFF783ADE 66 bp overlap
CHD2 1 dataset
ChIP K-562 ENCSR000EHD.CHD2.K-562 177 bp overlap
DDX20 1 dataset
ChIP K-562 ENCSR446LAV.DDX20.K-562 100 bp overlap
E2F6 1 dataset
ChIP K-562 ENCSR000BLI.E2F6.K-562 95 bp overlap
E4F1 2 datasets
ChIP K-562 ENCSR731LHZ.E4F1.K-562 144 bp overlap
ChIP K562 ENCFF622HMZ 109 bp overlap
EGR1 6 datasets
ChIP K-562 ENCSR000BNE.EGR1.K-562 265 bp overlap
ChIP K-562 ENCSR024CNP.EGR1.K-562 289 bp overlap
ChIP K-562 ENCSR211LTF.EGR1.K-562 242 bp overlap
ChIP K562 ENCFF006PJY 160 bp overlap
ChIP K562 ENCFF113OPQ 307 bp overlap
ChIP K562 ENCFF895KGN 242 bp overlap
ELF1 2 datasets
ChIP K-562 ENCSR000BMD.ELF1.K-562 178 bp overlap
ChIP K562 ENCFF496AKI 277 bp overlap
EP300 2 datasets
ChIP K562 ENCFF226VMS 317 bp overlap
ChIP K562 ENCFF226VMS 156 bp overlap
FOSL1 1 dataset
ChIP K-562 ENCSR239ZLZ.FOSL1.K-562 121 bp overlap
GATA4 1 dataset
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
GATA5 1 dataset
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-2 399 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 360 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 435 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 131 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 340 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 345 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 262 bp overlap
Gata3 1 dataset
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
HDAC1 1 dataset
ChIP K-562 ENCSR387UWP.HDAC1.K-562 134 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR075HTM.HDAC2.K-562 146 bp overlap
HDGF 3 datasets
ChIP K-562 ENCSR197ALX.HDGF.K-562 236 bp overlap
ChIP K-562 ENCSR197ALX.HDGF.K-562 173 bp overlap
ChIP K562 ENCFF682FBH 234 bp overlap
HMBOX1 3 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 162 bp overlap
ChIP K562 ENCFF317JJX 521 bp overlap
ChIP K562 ENCFF317JJX 449 bp overlap
HNRNPK 2 datasets
ChIP K-562 GSE120104.HNRNPK.K-562 208 bp overlap
ChIP K-562 ENCSR014RCS.HNRNPK.K-562 192 bp overlap
ILF3 1 dataset
ChIP K-562 GSE103215.ILF3.K-562 54 bp overlap
IRF1 2 datasets
ChIP K-562 ENCSR000EGT.IRF1.K-562 193 bp overlap
ChIP K562 ENCFF277KTJ 192 bp overlap
JUNB 1 dataset
ChIP K-562 ENCSR000DJY.JUNB.K-562 57 bp overlap
JUND 2 datasets
ChIP K-562 ENCSR000EGN.JUND.K-562 143 bp overlap
ChIP K562 ENCFF830LVJ 281 bp overlap
KLF1 2 datasets
Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap
Motif DE_48h DE_48h-KLF1_MA0493.3 8 bp overlap
KLF10 2 datasets
Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap
Motif DE_48h DE_48h-KLF10_MA1511.2 9 bp overlap
KLF14 2 datasets
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
Motif DE_48h DE_48h-KLF14_MA0740.2 9 bp overlap
KLF16 2 datasets
Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap
Motif DE_48h DE_48h-KLF16_MA0741.1 11 bp overlap
KLF17 1 dataset
Motif DE_48h DE_48h-KLF17_MA1514.2 14 bp overlap
KLF2 2 datasets
Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap
Motif DE_48h DE_48h-KLF2_MA1515.2 8 bp overlap
KLF4 2 datasets
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
Motif DE_48h DE_48h-KLF4_MA0039.5 8 bp overlap
KLF5 3 datasets
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
Motif DE_48h DE_48h-KLF5_MA0599.1 10 bp overlap
Motif DE_48h DE_48h-KLF5_MA0599.1 10 bp overlap
MAX 2 datasets
ChIP K-562 ENCSR000EFV.MAX.K-562 120 bp overlap
ChIP K562 ENCFF524IJO 380 bp overlap
MAZ 1 dataset
ChIP K-562 ENCSR000EFX.MAZ.K-562 156 bp overlap
MEF2D 2 datasets
ChIP K-562 ENCSR647ZXA.MEF2D.K-562 74 bp overlap
ChIP K562 ENCFF392LDT 144 bp overlap
MNT 1 dataset
ChIP K-562 ENCSR512NLO.MNT.K-562 130 bp overlap
MTA3 2 datasets
ChIP K-562 ENCSR914NEI.MTA3.K-562 110 bp overlap
ChIP K-562 ENCSR180NCY.MTA3.K-562 93 bp overlap
MYC 1 dataset
ChIP K562 ENCFF295NDX 88 bp overlap
NBN 2 datasets
ChIP K-562 ENCSR085QEV.NBN.K-562 81 bp overlap
ChIP K562 ENCFF146YTY 220 bp overlap
NCOR1 1 dataset
ChIP K-562 ENCSR798ILC.NCOR1.K-562 156 bp overlap
NFRKB 1 dataset
ChIP K-562 ENCSR657EOF.NFRKB.K-562 163 bp overlap
NFYB 1 dataset
ChIP K-562 GSE26439.NFYB.K-562 280 bp overlap
NR1I3 3 datasets
Motif DE_12h DE_12h-NR1I3_MA1534.2 8 bp overlap
Motif DE_24h DE_24h-NR1I3_MA1534.2 8 bp overlap
Motif DE_48h DE_48h-NR1I3_MA1534.2 8 bp overlap
NR2C1 2 datasets
ChIP K-562 ENCSR178DEG.NR2C1.K-562 126 bp overlap
ChIP K562 ENCFF568JLK 230 bp overlap
NR2C2 1 dataset
ChIP K-562 ENCSR750LYM.NR2C2.K-562 169 bp overlap
NR2F1 2 datasets
ChIP K-562 ENCSR970NKQ.NR2F1.K-562 254 bp overlap
ChIP K-562 ENCSR970NKQ.NR2F1.K-562 90 bp overlap
NR2F2 1 dataset
ChIP K-562 ENCSR000BRS.NR2F2.K-562 144 bp overlap
NR4A1 2 datasets
ChIP K-562 ENCSR130PDE.NR4A1.K-562 96 bp overlap
ChIP K562 ENCFF998LHF 96 bp overlap
Neurod2 3 datasets
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
Motif DE_24h DE_24h-Neurod2_MA1993.2 6 bp overlap
Motif DE_48h DE_48h-Neurod2_MA1993.2 6 bp overlap
Olig2 3 datasets
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
Motif DE_24h DE_24h-Olig2_MA1997.2 6 bp overlap
Motif DE_48h DE_48h-Olig2_MA1997.2 6 bp overlap
PATZ1 1 dataset
Motif DE_48h DE_48h-PATZ1_MA1961.2 11 bp overlap
PML 1 dataset
ChIP K562 ENCFF801LKH 303 bp overlap
POU1F1 1 dataset
Motif DE_48h DE_48h-POU1F1_MA0784.3 14 bp overlap
POU2F1 1 dataset
Motif DE_48h DE_48h-POU2F1_MA0785.2 9 bp overlap
POU2F2 1 dataset
Motif DE_48h DE_48h-POU2F2_MA0507.3 13 bp overlap
POU3F1 1 dataset
Motif DE_48h DE_48h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_48h DE_48h-POU3F2_MA0787.1 12 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 381 bp overlap
PRDM10 3 datasets
ChIP K-562 ENCSR120MPG.PRDM10.K-562 671 bp overlap
ChIP K562 ENCFF740YLK 279 bp overlap
ChIP K562 ENCFF740YLK 98 bp overlap
PRDM9 1 dataset
Motif DE_48h DE_48h-PRDM9_MA1723.2 20 bp overlap
PTTG1 1 dataset
ChIP K562 ENCFF017KRM 220 bp overlap
RB1 1 dataset
ChIP K562 ENCFF627ZBG 333 bp overlap
RELA 1 dataset
ChIP K-562 ENCSR772EEN.RELA.K-562 130 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 254 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 430 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 172 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 425 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 405 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 431 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 427 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 421 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 397 bp overlap
SMAD4 1 dataset
ChIP K562 ENCFF628RBP 271 bp overlap
SMARCA4 2 datasets
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 235 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 111 bp overlap
SMARCA5 1 dataset
ChIP K562 ENCFF936KHY 217 bp overlap
SP1 1 dataset
ChIP K562 ENCFF907BMO 317 bp overlap
STAT1 1 dataset
ChIP HeLa-S3 ENCSR000EZK.STAT1.HeLa-S3 121 bp overlap
Stat4 1 dataset
Motif DE_48h DE_48h-Stat4_MA0518.2 10 bp overlap
TFAP4 3 datasets
Motif DE_12h DE_12h-TFAP4_MA0691.1 10 bp overlap
Motif DE_24h DE_24h-TFAP4_MA0691.1 10 bp overlap
Motif DE_48h DE_48h-TFAP4_MA0691.1 10 bp overlap
TRIM25 1 dataset
ChIP K562 ENCFF537QZW 181 bp overlap
TRPS1 1 dataset
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Tcf12 3 datasets
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Motif DE_24h DE_24h-Tcf12_MA0521.3 6 bp overlap
Motif DE_48h DE_48h-Tcf12_MA0521.3 6 bp overlap
Twist2 3 datasets
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
Motif DE_24h DE_24h-Twist2_MA0633.3 6 bp overlap
Motif DE_48h DE_48h-Twist2_MA0633.3 6 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 156 bp overlap
VEZF1 4 datasets
Motif DE_48h DE_48h-VEZF1_MA1578.2 6 bp overlap
ChIP K-562 ENCSR189YMA.VEZF1.K-562 300 bp overlap
ChIP K562 ENCFF053XDV 671 bp overlap
ChIP K562 ENCFF053XDV 485 bp overlap
YY1 1 dataset
ChIP K-562 ENCSR000BMH.YY1.K-562 100 bp overlap
ZBTB40 3 datasets
ChIP K-562 ENCSR237VLT.ZBTB40.K-562 234 bp overlap
ChIP K-562 ENCSR237VLT.ZBTB40.K-562 114 bp overlap
ChIP K562 ENCFF521DSV 181 bp overlap
ZBTB6 1 dataset
Motif DE_48h DE_48h-ZBTB6_MA1581.2 9 bp overlap
ZBTB7A 1 dataset
ChIP K-562 GSE103445.ZBTB7A.K-562 149 bp overlap
ZEB2 1 dataset
ChIP K-562 ENCSR004GKA.ZEB2.K-562 250 bp overlap
ZFX 1 dataset
ChIP K562 ENCFF169LZT 52 bp overlap
ZNF143 1 dataset
Motif DE_48h DE_48h-ZNF143_MA0088.2 16 bp overlap
ZNF175 1 dataset
ChIP K562 ENCFF497AEJ 429 bp overlap
ZNF24 1 dataset
ChIP K562 ENCFF497GLV 220 bp overlap
ZNF281 1 dataset
Motif DE_48h DE_48h-ZNF281_MA1630.3 10 bp overlap
ZNF311 2 datasets
ChIP K-562 ENCSR388ZRV.ZNF311.K-562 114 bp overlap
ChIP K562 ENCFF986QSP 108 bp overlap
ZNF320 1 dataset
Motif DE_48h DE_48h-ZNF320_MA1976.2 20 bp overlap
ZNF558 1 dataset
Motif DE_48h DE_48h-ZNF558_MA2335.1 29 bp overlap
ZNF652 1 dataset
Motif DE_48h DE_48h-ZNF652_MA1657.2 9 bp overlap
ZNF684 2 datasets
Motif DE_12h DE_12h-ZNF684_MA1600.2 14 bp overlap
Motif DE_48h DE_48h-ZNF684_MA1600.2 14 bp overlap
ZNF740 2 datasets
Motif DE_48h DE_48h-ZNF740_MA0753.3 10 bp overlap
Motif DE_48h DE_48h-ZNF740_MA0753.3 10 bp overlap
ZNF76 3 datasets
Motif DE_48h DE_48h-ZNF76_MA1716.2 17 bp overlap
ChIP K-562 ENCSR257AFV.ZNF76.K-562 86 bp overlap
ChIP K562 ENCFF267KQX 146 bp overlap
ZNF766 1 dataset
ChIP K562 ENCFF348LDO 292 bp overlap
Zfp335 3 datasets
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Motif DE_24h DE_24h-Zfp335_MA2002.2 7 bp overlap
Motif DE_48h DE_48h-Zfp335_MA2002.2 7 bp overlap