chr6 : 41,406,787 41,407,231
444 bp 115 TFs 3 linked genes
This 444 bp open chromatin element is linked to FOXP4-AS1, FOXP4, and MDFI and is bound by 115 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
FOXP4-AS1 139.1 kb Distal Multiome
FOXP4 139.3 kb Distal Multiome
MDFI 229.8 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:41,401,787 – 41,412,231
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
115 transcription factors
Source
Cell type
AR 2 datasets
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 100 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 173 bp overlap
ARID4B 1 dataset
ChIP WTC11 ENCFF441HDK 265 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 444 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 444 bp overlap
ATF2 1 dataset
ChIP WTC11 ENCFF885OBU 322 bp overlap
BCOR 2 datasets
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 444 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 444 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 97 bp overlap
BRD4 4 datasets
ChIP COLO-741 GSE73319.BRD4.COLO-741 433 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 405 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 156 bp overlap
CBFB 2 datasets
ChIP ME-1 GSE46044.CBFB.ME-1 425 bp overlap
ChIP WTC11 ENCFF113HIY 292 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 304 bp overlap
CHD1 3 datasets
ChIP WA01 ENCSR000AQK.CHD1.WA01 156 bp overlap
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 283 bp overlap
ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 176 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 274 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 274 bp overlap
CTBP2 3 datasets
ChIP H1 ENCFF329MAX 375 bp overlap
ChIP H1 ENCFF329MAX 170 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 444 bp overlap
CTCF 5 datasets
ChIP T-47D_NaCl-isotonic-triptolide GSE111923.CTCF.T-47D_NaCl-isotonic-triptolide 288 bp overlap
ChIP T-47D_NaCl-triptolide GSE111923.CTCF.T-47D_NaCl-triptolide 298 bp overlap
ChIP endodermal cell ENCFF471YCZ 294 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 123 bp overlap
ChIP nerve_tibial ENCSR822PJT.CTCF.nerve_tibial 196 bp overlap
CTCFL 1 dataset
ChIP K-562 GSE70764.CTCFL.K-562 331 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 175 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 393 bp overlap
DMRTA2 1 dataset
Motif DE_12h DE_12h-DMRTA2_MA1478.2 6 bp overlap
DMRTC2 1 dataset
Motif DE_12h DE_12h-DMRTC2_MA1479.2 11 bp overlap
E2F4 1 dataset
ChIP WTC11 ENCFF574OKJ 437 bp overlap
E2F5 1 dataset
ChIP WTC11 ENCFF449LLF 444 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 416 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 444 bp overlap
ERG 5 datasets
ChIP AMLPZ12 GSE23730.ERG.AMLPZ12 207 bp overlap
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 390 bp overlap
ChIP HUVEC-C GSE124891.ERG.HUVEC-C 160 bp overlap
ChIP K-562_DOX GSE23730.ERG.K-562_DOX 183 bp overlap
ChIP MCF-7 GSE23730.ERG.MCF-7 239 bp overlap
ESR1 6 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 267 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 404 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 265 bp overlap
ChIP MCF-7 GSE48930.ESR1.MCF-7 181 bp overlap
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 315 bp overlap
ChIP MCF-7_Veh GSE93510.ESR1.MCF-7_Veh 325 bp overlap
ETS1 3 datasets
ChIP HUVEC-C_4h GSE93030.ETS1.HUVEC-C_4h 205 bp overlap
ChIP HUVEC-C_VEGF_4H GSE41166.ETS1.HUVEC-C_VEGF_4H 205 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.ETS1.HUVEC-C_VEGF_4h 205 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 314 bp overlap
EZH2 14 datasets
ChIP GM23338 ENCFF613YON 283 bp overlap
ChIP GM23338 ENCFF613YON 215 bp overlap
ChIP GM23338 ENCFF886DXX 171 bp overlap
ChIP H1 ENCFF232NZA 444 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 258 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 193 bp overlap
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 380 bp overlap
ChIP astrocyte ENCFF365JTP 444 bp overlap
ChIP astrocyte ENCFF365JTP 428 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 243 bp overlap
ChIP hESC GSE113817.EZH2.hESC 444 bp overlap
ChIP hepatocyte ENCFF552DZB 444 bp overlap
ChIP neural progenitor cell ENCFF018MKA 444 bp overlap
ChIP neural progenitor cell ENCFF472NFV 444 bp overlap
FLI1 2 datasets
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 419 bp overlap
ChIP UAE_ZINC GSE23730.FLI1.UAE_ZINC 224 bp overlap
FOXK1 1 dataset
ChIP WTC11 ENCFF875IGU 259 bp overlap
FOXP1 1 dataset
ChIP WTC11 ENCFF338WGC 336 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 247 bp overlap
GABPA 3 datasets
ChIP H1 ENCFF739QFD 321 bp overlap
ChIP H1 ENCFF739QFD 264 bp overlap
ChIP WA01 ENCSR000BIW.GABPA.WA01 444 bp overlap
GATA6 2 datasets
ChIP DE_D1 S41-DE-d1-GATA6-exp2 444 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 440 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF353UJQ 444 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 244 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 433 bp overlap
HIF1A 1 dataset
ChIP K-562 GSE123461.HIF1A.K-562 238 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 444 bp overlap
HMGXB4 1 dataset
ChIP WTC11 ENCFF962POR 444 bp overlap
HOXA3 1 dataset
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 182 bp overlap
IRF1 1 dataset
ChIP WTC11 ENCFF506LYD 280 bp overlap
JARID2 4 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 444 bp overlap
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 444 bp overlap
ChIP MRC-5_IPS25 GSE48516.JARID2.MRC-5_IPS25 444 bp overlap
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 444 bp overlap
JUN 5 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 360 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 330 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 311 bp overlap
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 188 bp overlap
ChIP WTC11 ENCFF172UDA 326 bp overlap
KDM4A 4 datasets
ChIP H1 ENCFF078LED 307 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 444 bp overlap
ChIP hiPSC_IA12 GSE106870.KDM4A.hiPSC_IA12 319 bp overlap
ChIP hiPSC_IIA11 GSE106870.KDM4A.hiPSC_IIA11 414 bp overlap
KDM5B 2 datasets
ChIP Hep-G2 ENCSR227MRE.KDM5B.Hep-G2 344 bp overlap
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 132 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 291 bp overlap
MAF1 1 dataset
ChIP THP-1_macrophage_PMA GSE96800.MAF1.THP-1_macrophage_PMA 302 bp overlap
MAX 5 datasets
ChIP H1 ENCFF914VQY 221 bp overlap
ChIP SK-N-SH ENCSR000BVD.MAX.SK-N-SH 243 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 159 bp overlap
ChIP WTC11 ENCFF223QFY 119 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EEZ.MAX.endothelial_umbilical-vein 90 bp overlap
MBD2 1 dataset
ChIP HeLa GSE41006.MBD2.HeLa 155 bp overlap
MITF 2 datasets
ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 260 bp overlap
ChIP melanocyte_CTR GSE50681.MITF.melanocyte_CTR 61 bp overlap
MNX1 1 dataset
ChIP Hep-G2 ENCSR108MKR.MNX1.Hep-G2 204 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 339 bp overlap
MTA1 1 dataset
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 404 bp overlap
MYBL2 2 datasets
ChIP WTC11 ENCFF166TKT 444 bp overlap
ChIP WTC11 ENCFF166TKT 280 bp overlap
MYC 2 datasets
ChIP H1 ENCFF794ZJT 132 bp overlap
ChIP WA01 ENCSR000EBY.MYC.WA01 117 bp overlap
MYCN 1 dataset
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 320 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 444 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 273 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 412 bp overlap
NCAPH2 1 dataset
ChIP HEK293 GSE97540.NCAPH2.HEK293 423 bp overlap
NFE2L1 1 dataset
ChIP WTC11 ENCFF644BPU 226 bp overlap
NFIC 2 datasets
ChIP SK-N-SH ENCFF965AKM 272 bp overlap
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 210 bp overlap
NR2F2 2 datasets
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 444 bp overlap
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 444 bp overlap
OGG1 3 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 191 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 236 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 293 bp overlap
OLIG2 1 dataset
ChIP brain-prefrontal-cortex_2017014 GSE129039.OLIG2.brain-prefrontal-cortex_2017014 322 bp overlap
PHF8 1 dataset
ChIP WA01 ENCSR000ATK.PHF8.WA01 220 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 187 bp overlap
POLR2A 2 datasets
ChIP spleen ENCFF446ZGT 236 bp overlap
ChIP spleen ENCFF706IUS 263 bp overlap
POU2F1 2 datasets
ChIP T-47D GSE148277.POU2F1.T-47D 287 bp overlap
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 236 bp overlap
POU5F1 4 datasets
ChIP BG03 GSE21614.POU5F1.BG03 417 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 444 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 444 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 412 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 426 bp overlap
PPARG 1 dataset
Motif DE_12h DE_12h-PPARG_MA0066.2 19 bp overlap
RAD21 1 dataset
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 156 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 383 bp overlap
REST 1 dataset
ChIP hiPSC_IB12 GSE106870.REST.hiPSC_IB12 129 bp overlap
RNF2 3 datasets
ChIP H1 ENCFF239FFS 352 bp overlap
ChIP H1 ENCFF239FFS 320 bp overlap
ChIP H1 ENCFF239FFS 208 bp overlap
RORA 1 dataset
Motif DE_12h DE_12h-RORA_MA0072.2 11 bp overlap
RORB 1 dataset
Motif DE_12h DE_12h-RORB_MA1150.2 10 bp overlap
RORC 3 datasets
Motif DE_12h DE_12h-RORC_MA1151.2 10 bp overlap
ChIP HCC70 GSE126380.RORC.HCC70 384 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 365 bp overlap
RUNX1 2 datasets
ChIP Jurkat GSE85524.RUNX1.Jurkat 222 bp overlap
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 200 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 326 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 332 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 255 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 444 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 444 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 444 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 444 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 338 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 444 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 394 bp overlap
ChIP ESC S23-ESC-d0-SMAD2_3-exp1 348 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 216 bp overlap
SMAD3 1 dataset
ChIP WTC11 ENCFF815YYQ 213 bp overlap
SOX2 1 dataset
ChIP RENVM GSE49404.SOX2.RENVM 174 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 346 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 408 bp overlap
STAT3 2 datasets
ChIP A139 GSE85579.STAT3.A139 203 bp overlap
ChIP WA01 ERP004237.STAT3.WA01 326 bp overlap
SUZ12 4 datasets
ChIP H1 ENCFF881NFR 444 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 213 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 444 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 382 bp overlap
TAF1 1 dataset
ChIP H1 ENCFF478SZO 421 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 138 bp overlap
TCF7 1 dataset
ChIP WTC11 ENCFF431UYL 353 bp overlap
TFAP2B 1 dataset
Motif DE_12h DE_12h-TFAP2B_MA0812.2 9 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 444 bp overlap
TFIIIC 1 dataset
ChIP HEK293 GSE119418.TFIIIC.HEK293 296 bp overlap
TGIF2 1 dataset
ChIP WTC11 ENCFF649SHI 366 bp overlap
TP53 1 dataset
ChIP WTC11 ENCFF359JCU 419 bp overlap
TP63 2 datasets
ChIP breast-organoid GSE113909.TP63.breast-organoid 116 bp overlap
ChIP keratinocyte GSE33571.TP63.keratinocyte 91 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 311 bp overlap
TRIM28 1 dataset
ChIP HCT-116 GSE72622.TRIM28.HCT-116 411 bp overlap
USF1 2 datasets
ChIP WA01 ENCSR000BIU.USF1.WA01 156 bp overlap
ChIP WTC11 ENCFF699QGS 258 bp overlap
USF2 1 dataset
ChIP WTC11 ENCFF139JAW 281 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 444 bp overlap
ZBTB21 2 datasets
ChIP WTC11 ENCFF677ZYY 345 bp overlap
ChIP WTC11 ENCFF677ZYY 112 bp overlap
ZBTB43 1 dataset
ChIP WTC11 ENCFF058JUB 276 bp overlap
ZBTB48 2 datasets
ChIP U2OS GSE96776.ZBTB48.U2OS 368 bp overlap
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 400 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 444 bp overlap
ZNF2 1 dataset
ChIP HEK293T GSE78099.ZNF2.HEK293T 275 bp overlap
ZNF317 1 dataset
ChIP WTC11 ENCFF537KXI 357 bp overlap
ZNF512 1 dataset
ChIP WTC11 ENCFF086TTM 344 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 444 bp overlap