chr6 : 3,166,807 3,167,675
868 bp 120 TFs 1 linked gene
This 868 bp open chromatin element is linked to TUBB2A and is bound by 120 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
TUBB2A 9.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:3,161,807 – 3,172,675
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
120 transcription factors
Source
Cell type
AFF1 1 dataset
ChIP K562 ENCFF583EEH 132 bp overlap
ARID4B 1 dataset
ChIP K562 ENCFF791HBV 601 bp overlap
ARNT 5 datasets
ChIP K-562 ENCSR613NUC.ARNT.K-562 264 bp overlap
ChIP K-562 ENCSR155KHM.ARNT.K-562 269 bp overlap
ChIP K562 ENCFF291CXK 217 bp overlap
ChIP K562 ENCFF451RAF 390 bp overlap
ChIP K562 ENCFF703HVX 361 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 176 bp overlap
ATF2 1 dataset
Motif DE_24h DE_24h-ATF2_MA1632.2 10 bp overlap
BACH2 1 dataset
Motif DE_24h DE_24h-BACH2_MA1470.2 19 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 236 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 207 bp overlap
BRD3 1 dataset
ChIP H-1_DE GSE126661.BRD3.H-1_DE 219 bp overlap
BRD4 2 datasets
ChIP SW480 GSE110473.BRD4.SW480 110 bp overlap
ChIP SW480 GSE73319.BRD4.SW480 127 bp overlap
BRD9 2 datasets
ChIP K-562 ENCSR177XCS.BRD9.K-562 137 bp overlap
ChIP K562 ENCFF480JXZ 51 bp overlap
CAVIN1 1 dataset
ChIP K562 ENCFF731YBD 341 bp overlap
CREB1 1 dataset
Motif DE_24h DE_24h-CREB1_MA0018.5 8 bp overlap
CXXC5 1 dataset
ChIP K562 ENCFF497CZN 520 bp overlap
DDX20 1 dataset
ChIP K562 ENCFF205RDN 101 bp overlap
DMBX1 1 dataset
ChIP K562 ENCFF972HXB 349 bp overlap
DPF2 1 dataset
ChIP K-562 ENCSR219BXP.DPF2.K-562 89 bp overlap
DUX4 1 dataset
Motif DE_24h DE_24h-DUX4_MA0468.1 11 bp overlap
E2F5 2 datasets
ChIP K562 ENCFF688PUB 551 bp overlap
ChIP K562 ENCFF688PUB 653 bp overlap
E4F1 1 dataset
ChIP K-562 ENCSR731LHZ.E4F1.K-562 56 bp overlap
EHMT2 1 dataset
ChIP K562 ENCFF053BWO 91 bp overlap
ELF4 1 dataset
ChIP K562 ENCFF200OMJ 311 bp overlap
EP400 1 dataset
ChIP K562 ENCFF850OZQ 358 bp overlap
EPAS1 1 dataset
Motif DE_12h DE_12h-EPAS1_MA2325.1 9 bp overlap
ERF 1 dataset
ChIP K562 ENCFF626IQJ 337 bp overlap
ESRRB 1 dataset
ChIP K562 ENCFF466RVG 211 bp overlap
FOS 1 dataset
Motif DE_24h DE_24h-FOS_MA1951.2 13 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 740 bp overlap
ChIP DE DE-FOXA2-2 289 bp overlap
ChIP DE DE-FOXA2-2 135 bp overlap
FOXK2 1 dataset
ChIP K562 ENCFF851PFH 162 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 848 bp overlap
ChIP DE DE-GATA4-2 858 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 747 bp overlap
ChIP DE DE-GATA6-2 868 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 770 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 868 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 868 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 731 bp overlap
HDAC1 1 dataset
ChIP K562 ENCFF928TKZ 104 bp overlap
HDGF 4 datasets
ChIP K-562 ENCSR197ALX.HDGF.K-562 233 bp overlap
ChIP K-562 ENCSR563YDA.HDGF.K-562 118 bp overlap
ChIP K562 ENCFF682FBH 145 bp overlap
ChIP K562 ENCFF682FBH 375 bp overlap
HIF1A 1 dataset
Motif DE_12h DE_12h-HIF1A_MA1106.2 6 bp overlap
HINFP 1 dataset
ChIP K562 ENCFF361QXJ 255 bp overlap
HIVEP1 1 dataset
ChIP K562 ENCFF983WKN 265 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 113 bp overlap
IKZF1 1 dataset
ChIP K562 ENCFF348IBL 505 bp overlap
IRF1 1 dataset
ChIP WTC11 ENCFF506LYD 377 bp overlap
JUN 4 datasets
Motif DE_24h DE_24h-JUN_MA0488.2 10 bp overlap
ChIP DE_D1 S08-DE-d1-JUN-exp1 568 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 722 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 805 bp overlap
JUND 1 dataset
Motif DE_24h DE_24h-JUND_MA0492.2 11 bp overlap
LARP7 2 datasets
ChIP K562 ENCFF550RPP 90 bp overlap
ChIP K562 ENCFF550RPP 309 bp overlap
MAFF 1 dataset
Motif DE_24h DE_24h-MAFF_MA0495.4 11 bp overlap
MBD1 1 dataset
ChIP K562 ENCFF741LIL 165 bp overlap
MECOM 1 dataset
ChIP K562 ENCFF773RGL 311 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 128 bp overlap
MEIS1 1 dataset
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
MLLT1 2 datasets
ChIP K-562 ENCSR675LRO.MLLT1.K-562 141 bp overlap
ChIP K-562 ENCSR107GRP.MLLT1.K-562 120 bp overlap
MTA2 2 datasets
ChIP K-562 ENCSR411UYA.MTA2.K-562 149 bp overlap
ChIP K-562 ENCSR113LAS.MTA2.K-562 110 bp overlap
MTA3 1 dataset
ChIP K-562 ENCSR180NCY.MTA3.K-562 120 bp overlap
MTF1 1 dataset
ChIP K562 ENCFF811XMB 321 bp overlap
Mafb 1 dataset
Motif DE_24h DE_24h-Mafb_MA0117.3 11 bp overlap
Mecom 1 dataset
Motif DE_24h DE_24h-Mecom_MA0029.2 11 bp overlap
NANOG 4 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 237 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 273 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 132 bp overlap
NBN 1 dataset
ChIP K-562 ENCSR085QEV.NBN.K-562 101 bp overlap
NCOA4 1 dataset
ChIP K562 ENCFF403UQZ 235 bp overlap
NCOR1 1 dataset
ChIP K-562 ENCSR798ILC.NCOR1.K-562 162 bp overlap
NFRKB 1 dataset
ChIP K-562 ENCSR657EOF.NFRKB.K-562 169 bp overlap
NR2C1 2 datasets
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
ChIP K562 ENCFF568JLK 411 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
NR2F1 3 datasets
Motif DE_12h DE_12h-NR2F1_MA1537.2 13 bp overlap
Motif DE_24h DE_24h-NR2F1_MA0017.3 12 bp overlap
ChIP K562 ENCFF221HJH 497 bp overlap
NRL 1 dataset
Motif DE_24h DE_24h-NRL_MA0842.3 12 bp overlap
Nr1H2 1 dataset
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
Nr2F6 1 dataset
Motif DE_24h DE_24h-Nr2F6_MA0728.1 15 bp overlap
Nr2f6 1 dataset
Motif DE_12h DE_12h-Nr2f6_MA0677.2 13 bp overlap
PKNOX1 1 dataset
ChIP K562 ENCFF236IUS 107 bp overlap
POLR2A 1 dataset
ChIP K562 ENCFF419GHN 144 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 382 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 64 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 249 bp overlap
RELA 2 datasets
Motif DE_24h DE_24h-RELA_MA0107.1 10 bp overlap
ChIP K562 ENCFF892SPR 418 bp overlap
RNF2 1 dataset
ChIP K562 ENCFF653BQJ 598 bp overlap
RREB1 1 dataset
ChIP K562 ENCFF796IEO 351 bp overlap
Rarg 1 dataset
Motif DE_24h DE_24h-Rarg_MA0859.2 15 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 259 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 460 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 478 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 631 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 493 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 549 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 334 bp overlap
SMAD4 2 datasets
ChIP K562 ENCFF628RBP 492 bp overlap
ChIP K562 ENCFF628RBP 541 bp overlap
SMARCA4 3 datasets
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 186 bp overlap
ChIP K562 ENCFF316MCJ 94 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 127 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S10-DE-d1-BAF155-exp1 132 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 274 bp overlap
SP1 1 dataset
ChIP WTC11 ENCFF688PEU 192 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 264 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 290 bp overlap
TBX19 1 dataset
Motif DE_24h DE_24h-TBX19_MA0804.2 17 bp overlap
TCF15 1 dataset
ChIP K562 ENCFF099NVR 311 bp overlap
TEAD1 2 datasets
ChIP K562 ENCFF254RJL 494 bp overlap
ChIP WTC11 ENCFF502QUV 405 bp overlap
TFDP1 1 dataset
ChIP K562 ENCFF794ZXJ 70 bp overlap
THRB 2 datasets
Motif DE_12h DE_12h-THRB_MA1574.2 13 bp overlap
ChIP K562 ENCFF620NFN 291 bp overlap
TP53 1 dataset
ChIP H9 GSE142050.TP53.H9 293 bp overlap
TRIM28 2 datasets
ChIP K562 ENCFF429WPG 107 bp overlap
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 132 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 178 bp overlap
Yy1 1 dataset
Motif DE_24h DE_24h-Yy1_MA0095.4 8 bp overlap
ZFP42 1 dataset
Motif DE_24h DE_24h-ZFP42_MA1651.2 13 bp overlap
ZNF184 1 dataset
ChIP K562 ENCFF717TPQ 149 bp overlap
ZNF41 1 dataset
ChIP K562 ENCFF693FMG 277 bp overlap
ZNF449 2 datasets
Motif DE_12h DE_12h-ZNF449_MA1656.2 10 bp overlap
ChIP K562 ENCFF038VEZ 305 bp overlap
ZNF512 3 datasets
ChIP K-562 ENCSR591CCL.ZNF512.K-562 132 bp overlap
ChIP K562 ENCFF601EMZ 244 bp overlap
ChIP K562 ENCFF601EMZ 454 bp overlap
ZNF528 1 dataset
Motif DE_24h DE_24h-ZNF528_MA1597.1 17 bp overlap
ZNF583 1 dataset
ChIP K562 ENCFF879KXH 313 bp overlap
ZNF584 1 dataset
ChIP K562 ENCFF771INO 233 bp overlap
ZNF589 3 datasets
ChIP K562 ENCFF770FHN 406 bp overlap
ChIP K562 ENCFF770FHN 741 bp overlap
ChIP K562 ENCFF770FHN 516 bp overlap
ZNF639 1 dataset
ChIP K562 ENCFF267NLX 443 bp overlap
ZNF667 1 dataset
Motif DE_24h DE_24h-ZNF667_MA1984.2 11 bp overlap
ZNF668 1 dataset
ChIP K562 ENCFF112IUE 301 bp overlap
ZNF707 2 datasets
Motif DE_24h DE_24h-ZNF707_MA1715.1 15 bp overlap
Motif DE_24h DE_24h-ZNF707_MA1715.1 15 bp overlap
ZNF75A 1 dataset
ChIP K562 ENCFF410JIO 345 bp overlap
ZNF766 1 dataset
ChIP K562 ENCFF348LDO 219 bp overlap
ZNF79 1 dataset
ChIP K562 ENCFF558WWN 305 bp overlap
ZNF816 1 dataset
Motif DE_12h DE_12h-ZNF816_MA1719.2 15 bp overlap