chr3 : 184,659,070 184,659,510
440 bp 124 TFs 0 linked genes
This 440 bp open chromatin element has no linked target genes and is bound by 124 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:184,654,070 – 184,664,510
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
124 transcription factors
Source
Cell type
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 440 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 440 bp overlap
ATF2 2 datasets
ChIP H1 ENCFF295GZO 440 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 360 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 186 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 380 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 421 bp overlap
BRD4 14 datasets
ChIP BE2C GSE80151.BRD4.BE2C 82 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 226 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 303 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 188 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 194 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 82 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 60 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 184 bp overlap
ChIP SW480 GSE110473.BRD4.SW480 440 bp overlap
ChIP SW480 GSE73319.BRD4.SW480 278 bp overlap
ChIP SW480_16h_TNF-a GSE110473.BRD4.SW480_16h_TNF-a 440 bp overlap
ChIP hESC GSE33281.BRD4.hESC 73 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 440 bp overlap
CBFA2T2 2 datasets
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 164 bp overlap
ChIP NCCIT GSE71675.CBFA2T2.NCCIT 397 bp overlap
CBLL2 1 dataset
ChIP HEK293 ENCFF130FAX 190 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 155 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 350 bp overlap
CREB1 3 datasets
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 229 bp overlap
ChIP H1 ENCFF955PMP 321 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 333 bp overlap
CTCF 8 datasets
ChIP GM23338 ENCFF772DML 191 bp overlap
ChIP H1 ENCFF414GZI 170 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 157 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 169 bp overlap
ChIP endodermal cell ENCFF471YCZ 252 bp overlap
ChIP hiPSC_HUES9 GSE106870.CTCF.hiPSC_HUES9 199 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 77 bp overlap
ChIP retinal pigment epithelial cell ENCFF810AAG 130 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 394 bp overlap
DDX5 1 dataset
ChIP NTERA2 GSE58641.DDX5.NTERA2 313 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 408 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 316 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 384 bp overlap
EP300 1 dataset
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 145 bp overlap
ESR1 1 dataset
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 208 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 322 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 232 bp overlap
EZH2 1 dataset
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 440 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 190 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 377 bp overlap
GATA2 2 datasets
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 205 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 209 bp overlap
GATA3 2 datasets
ChIP Kelly GSE65664.GATA3.Kelly 151 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 135 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 341 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-2 440 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 440 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 440 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 440 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 440 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 282 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 440 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 252 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 244 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 191 bp overlap
HBP1 1 dataset
ChIP Hep-G2 ENCSR616WEG.HBP1.Hep-G2 102 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 194 bp overlap
HNF1B 1 dataset
ChIP foregut GSE117136.HNF1B.foregut 70 bp overlap
HOXA3 1 dataset
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 243 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 104 bp overlap
JUN 4 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 279 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 430 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 269 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 269 bp overlap
JUND 1 dataset
ChIP Hep-G2 ENCSR000BGK.JUND.Hep-G2 132 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 88 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 170 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 198 bp overlap
KMT2A 1 dataset
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 164 bp overlap
MAX 6 datasets
ChIP H1 ENCFF914VQY 250 bp overlap
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 397 bp overlap
ChIP Hep-G2 ENCSR000BTM.MAX.Hep-G2 188 bp overlap
ChIP K-562 ENCSR000EFV.MAX.K-562 106 bp overlap
ChIP MDA-MB-231 GSE127192.MAX.MDA-MB-231 112 bp overlap
ChIP WTC11 ENCFF223QFY 440 bp overlap
MITF 2 datasets
ChIP 501-mel_20ng_K243R GSE137522.MITF.501-mel_20ng_K243R 244 bp overlap
ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 277 bp overlap
MNT 1 dataset
ChIP Hep-G2 ENCSR261EDU.MNT.Hep-G2 197 bp overlap
MTA1 1 dataset
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 190 bp overlap
MYCN 6 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 234 bp overlap
ChIP Kelly GSE94782.MYCN.Kelly 210 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 222 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 270 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 278 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 213 bp overlap
MYNN 1 dataset
ChIP Hep-G2 ENCSR398TMP.MYNN.Hep-G2 165 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 324 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 264 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 186 bp overlap
NFAT5 1 dataset
ChIP Hep-G2 ENCSR565BVI.NFAT5.Hep-G2 154 bp overlap
NFE2L1 1 dataset
ChIP WTC11 ENCFF644BPU 269 bp overlap
NR3C1 1 dataset
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 66 bp overlap
PDX1 2 datasets
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 73 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 312 bp overlap
PHF8 1 dataset
ChIP Hep-G2 ENCSR604VAE.PHF8.Hep-G2 145 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 228 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 97 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 440 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 388 bp overlap
POLR2A 2 datasets
ChIP H1 ENCFF566JSR 440 bp overlap
ChIP H1 ENCFF833NJP 411 bp overlap
POU5F1 4 datasets
ChIP BG03 GSE21614.POU5F1.BG03 171 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 389 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 423 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 436 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 391 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 301 bp overlap
RAD21 3 datasets
ChIP H1 ENCFF698EWO 225 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 181 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 281 bp overlap
RARA 1 dataset
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 383 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 126 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 353 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 246 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 201 bp overlap
RUNX1 1 dataset
ChIP AML GSE111821.RUNX1.AML 211 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 135 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 427 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 440 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 440 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 243 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 440 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 394 bp overlap
SMAD3 1 dataset
ChIP hESC GSE29422.SMAD3.hESC 194 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 440 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 199 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 179 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 181 bp overlap
SMARCC1 2 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 440 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 194 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 359 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 285 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 316 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 346 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 402 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 137 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 79 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 300 bp overlap
TAF1 3 datasets
ChIP H1 ENCFF478SZO 440 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 60 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 237 bp overlap
TAF7 2 datasets
ChIP H1 ENCFF061XZZ 225 bp overlap
ChIP H1 ENCFF061XZZ 306 bp overlap
TBP 6 datasets
ChIP H1 ENCFF859IIO 365 bp overlap
ChIP K-562 GSE55306.TBP.K-562 153 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 332 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 142 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 175 bp overlap
ChIP hiPSC_WTa_RNase-neg GSE128135.TBP.hiPSC_WTa_RNase-neg 187 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 142 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 115 bp overlap
TCF12 3 datasets
ChIP H1 ENCFF203EBH 244 bp overlap
ChIP H1 ENCFF203EBH 233 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 139 bp overlap
TCF4 1 dataset
ChIP SK-N-SH ENCFF270OWF 224 bp overlap
TEAD1 1 dataset
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 205 bp overlap
TEAD4 3 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 343 bp overlap
ChIP H1 ENCFF778PAX 238 bp overlap
ChIP SNU-216 GSE44416.TEAD4.SNU-216 179 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 218 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 440 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 310 bp overlap
TFE3 1 dataset
ChIP Hep-G2 ENCSR589SNT.TFE3.Hep-G2 176 bp overlap
TP53 1 dataset
ChIP SW480_0h_TNFa GSE102796.TP53.SW480_0h_TNFa 185 bp overlap
TRIM28 2 datasets
ChIP AF22 GSE84259.TRIM28.AF22 265 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 297 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 298 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 231 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 231 bp overlap
UBTF 1 dataset
ChIP HepG2 ENCFF424RNN 440 bp overlap
USF1 9 datasets
ChIP H1 ENCFF090WVU 168 bp overlap
ChIP Hep-G2 ENCSR000BGM.USF1.Hep-G2 134 bp overlap
ChIP HepG2 ENCFF201JKA 337 bp overlap
ChIP HepG2 ENCFF807KYJ 201 bp overlap
ChIP K-562 ENCSR000BKT.USF1.K-562 204 bp overlap
ChIP K562 ENCFF633EZB 265 bp overlap
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 135 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 315 bp overlap
ChIP WTC11 ENCFF699QGS 382 bp overlap
USF2 4 datasets
ChIP H1 ENCFF434EDF 277 bp overlap
ChIP Hep-G2 GSE97661.USF2.Hep-G2 224 bp overlap
ChIP WA01 ENCSR000ECD.USF2.WA01 212 bp overlap
ChIP WTC11 ENCFF139JAW 273 bp overlap
VEZF1 2 datasets
ChIP K562 ENCFF053XDV 224 bp overlap
ChIP K562 ENCFF053XDV 440 bp overlap
YY1 5 datasets
ChIP H1 ENCFF524BTL 323 bp overlap
ChIP Huh-7 GSE97411.YY1.Huh-7 329 bp overlap
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 227 bp overlap
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 200 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 208 bp overlap
ZBTB43 1 dataset
ChIP WTC11 ENCFF058JUB 429 bp overlap
ZFP3 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 206 bp overlap
ZFX 1 dataset
ChIP HepG2 ENCFF016NZF 440 bp overlap
ZFY 1 dataset
ChIP Hep-G2 ENCSR949OEV.ZFY.Hep-G2 221 bp overlap
ZNF12 2 datasets
ChIP Hep-G2 ENCSR711KBM.ZNF12.Hep-G2 300 bp overlap
ChIP HepG2 ENCFF347LSW 186 bp overlap
ZNF121 1 dataset
ChIP WTC11 ENCFF291API 297 bp overlap
ZNF281 2 datasets
ChIP K-562 GSE121133.ZNF281.K-562 84 bp overlap
ChIP WTC11 ENCFF551GAV 362 bp overlap
ZNF317 1 dataset
ChIP WTC11 ENCFF537KXI 357 bp overlap
ZNF479 1 dataset
ChIP HEK293T GSE78099.ZNF479.HEK293T 171 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 191 bp overlap
ZNF646 1 dataset
ChIP HepG2 ENCFF141MBP 360 bp overlap
ZNF687 1 dataset
ChIP HepG2 ENCFF653WIX 202 bp overlap
ZNF865 1 dataset
ChIP HepG2 ENCFF472KAQ 310 bp overlap