chr3 : 57,599,015 57,599,387
372 bp 122 TFs 2 linked genes
This 372 bp open chromatin element is linked to ARF4-AS1 and ARF4 and is bound by 122 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
ARF4-AS1 1.5 kb Proximal Proximity
ARF4 1.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:57,594,015 – 57,604,387
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
122 transcription factors
Source
Cell type
AFF1 1 dataset
ChIP K-562 ENCSR426URK.AFF1.K-562 73 bp overlap
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 372 bp overlap
ChIP K562 ENCFF938UXQ 372 bp overlap
ARID3A 2 datasets
ChIP K562 ENCFF728CDS 345 bp overlap
ChIP K562 ENCFF728CDS 166 bp overlap
ARID5B 1 dataset
ChIP HepG2 ENCFF964FWK 259 bp overlap
ARNT 3 datasets
ChIP K562 ENCFF291CXK 322 bp overlap
ChIP K562 ENCFF451RAF 347 bp overlap
ChIP K562 ENCFF703HVX 289 bp overlap
BCOR 1 dataset
ChIP K562 ENCFF343XWA 111 bp overlap
BRD2 1 dataset
ChIP K-562_DMSO GSE138084.BRD2.K-562_DMSO 75 bp overlap
BRD4 2 datasets
ChIP K-562_DMSO GSE138084.BRD4.K-562_DMSO 89 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD4.K-562_DMSO-IFNG 53 bp overlap
CBFA2T2 2 datasets
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 354 bp overlap
ChIP K562 ENCFF963TXY 318 bp overlap
CBFA2T3 3 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 372 bp overlap
ChIP K-562 GSE142227.CBFA2T3.K-562 52 bp overlap
ChIP K562 ENCFF673OEZ 372 bp overlap
CC2D1A 2 datasets
ChIP K-562 ENCSR343IFJ.CC2D1A.K-562 283 bp overlap
ChIP K562 ENCFF567XUT 235 bp overlap
CCNT2 1 dataset
ChIP K562 ENCFF199GSZ 350 bp overlap
CTBP1 1 dataset
ChIP K562 ENCFF403WPG 372 bp overlap
CUX1 1 dataset
ChIP K562 ENCFF057AIX 345 bp overlap
CXXC5 1 dataset
ChIP K562 ENCFF497CZN 372 bp overlap
DACH1 1 dataset
ChIP K562 ENCFF574LOW 328 bp overlap
DDX20 1 dataset
ChIP K562 ENCFF205RDN 335 bp overlap
DMBX1 1 dataset
ChIP K562 ENCFF972HXB 286 bp overlap
DPF2 3 datasets
ChIP K-562 ENCSR219BXP.DPF2.K-562 372 bp overlap
ChIP K562 ENCFF739JDE 282 bp overlap
ChIP K562 ENCFF775HUO 372 bp overlap
E2F5 1 dataset
ChIP K562 ENCFF688PUB 372 bp overlap
ELF1 1 dataset
ChIP K562 ENCFF496AKI 277 bp overlap
ELF4 2 datasets
ChIP HepG2 ENCFF752OAT 254 bp overlap
ChIP K562 ENCFF454SBL 345 bp overlap
EP300 2 datasets
ChIP K-562 ENCSR000EGE.EP300.K-562 178 bp overlap
ChIP K562 ENCFF226VMS 105 bp overlap
EP400 1 dataset
ChIP K562 ENCFF850OZQ 372 bp overlap
ERF 1 dataset
ChIP K562 ENCFF626IQJ 219 bp overlap
ETV1 1 dataset
ChIP K562 ENCFF389WTI 322 bp overlap
FOS 1 dataset
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 142 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 198 bp overlap
ChIP DE DE-FOXA2-2 258 bp overlap
FOXM1 2 datasets
ChIP K-562 ENCSR429QPP.FOXM1.K-562 268 bp overlap
ChIP K562 ENCFF255RHV 234 bp overlap
GABPA 1 dataset
ChIP K562 ENCFF996TSW 283 bp overlap
GATA1 10 datasets
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 262 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 262 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 372 bp overlap
ChIP K-562 ENCSR000EFT.GATA1.K-562 171 bp overlap
ChIP K562 ENCFF094CMK 251 bp overlap
ChIP erythroblast ENCFF125LDD 308 bp overlap
ChIP erythroblast ENCFF867JAR 372 bp overlap
ChIP erythroid_Don001 GSE137982.GATA1.erythroid_Don001 252 bp overlap
ChIP erythroid_Don002 GSE137982.GATA1.erythroid_Don002 162 bp overlap
ChIP erythroid_Don003 GSE137982.GATA1.erythroid_Don003 261 bp overlap
GATA2 8 datasets
ChIP K-562 ENCSR000DKA.GATA2.K-562 260 bp overlap
ChIP K-562 ENCSR000EWG.GATA2.K-562 223 bp overlap
ChIP K-562 ENCSR000BKM.GATA2.K-562 153 bp overlap
ChIP K562 ENCFF088XQT 313 bp overlap
ChIP K562 ENCFF513FTZ 292 bp overlap
ChIP K562 ENCFF544PCK 138 bp overlap
ChIP K562 ENCFF830LLA 372 bp overlap
ChIP K562 ENCFF830LLA 258 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 372 bp overlap
ChIP DE DE-GATA4-2 372 bp overlap
ChIP foregut GSE117136.GATA4.foregut 217 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 365 bp overlap
ChIP DE DE-GATA6-2 372 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 372 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 372 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 372 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 372 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 372 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 203 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 224 bp overlap
ChIP foregut GSE117136.GATA6.foregut 204 bp overlap
GATAD2A 1 dataset
ChIP K562 ENCFF071LJW 299 bp overlap
GATAD2B 1 dataset
ChIP K562 ENCFF696VMK 345 bp overlap
GMEB1 1 dataset
ChIP K562 ENCFF705LHX 372 bp overlap
HDAC1 3 datasets
ChIP K562 ENCFF386RRT 290 bp overlap
ChIP K562 ENCFF928TKZ 224 bp overlap
ChIP K562 ENCFF968WBH 312 bp overlap
HDAC2 4 datasets
ChIP K-562 ENCSR893WSB.HDAC2.K-562 372 bp overlap
ChIP K562 ENCFF738SPU 225 bp overlap
ChIP K562 ENCFF744ALD 315 bp overlap
ChIP K562 ENCFF919OMP 213 bp overlap
HDAC3 1 dataset
ChIP K562 ENCFF713GIR 372 bp overlap
HMBOX1 1 dataset
ChIP K562 ENCFF055GAZ 372 bp overlap
HMG20A 1 dataset
ChIP K562 ENCFF840WDB 372 bp overlap
IKZF1 2 datasets
ChIP K562 ENCFF348IBL 294 bp overlap
ChIP K562 ENCFF771OHZ 304 bp overlap
KDM1A 5 datasets
ChIP K-562 ENCSR360HRA.KDM1A.K-562 372 bp overlap
ChIP K-562 ENCSR908CMW.KDM1A.K-562 356 bp overlap
ChIP K562 ENCFF128TYE 316 bp overlap
ChIP K562 ENCFF133OLU 318 bp overlap
ChIP K562 ENCFF934ZRG 368 bp overlap
KLF16 1 dataset
ChIP K562 ENCFF464PIV 152 bp overlap
L3MBTL2 2 datasets
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 110 bp overlap
ChIP K562 ENCFF320EQC 313 bp overlap
LDB1 2 datasets
ChIP HEP GSE52637.LDB1.HEP 169 bp overlap
ChIP K-562 GSE142227.LDB1.K-562 60 bp overlap
LEF1 1 dataset
ChIP K562 ENCFF198WCP 372 bp overlap
MAX 1 dataset
ChIP K562 ENCFF110LJS 351 bp overlap
MAZ 3 datasets
ChIP K562 ENCFF333ZIV 328 bp overlap
ChIP K562 ENCFF809XHP 334 bp overlap
ChIP K562 ENCFF982GSZ 372 bp overlap
MCM7 1 dataset
ChIP K562 ENCFF081NIG 287 bp overlap
MEIS2 2 datasets
ChIP K562 ENCFF320GSD 298 bp overlap
ChIP K562 ENCFF320GSD 243 bp overlap
MGA 1 dataset
ChIP K562 ENCFF140CEX 303 bp overlap
MNT 2 datasets
ChIP K-562 ENCSR390VGH.MNT.K-562 161 bp overlap
ChIP K562 ENCFF820IGH 372 bp overlap
MTA1 1 dataset
ChIP K562 ENCFF230ZKA 329 bp overlap
MTA2 1 dataset
ChIP K562 ENCFF880VZB 262 bp overlap
NCOA1 3 datasets
ChIP K-562 ENCSR658WFQ.NCOA1.K-562 222 bp overlap
ChIP K562 ENCFF395XLS 304 bp overlap
ChIP K562 ENCFF962VHQ 232 bp overlap
NCOA2 1 dataset
ChIP K562 ENCFF365JLH 237 bp overlap
NCOR1 5 datasets
ChIP K-562 ENCSR798ILC.NCOR1.K-562 372 bp overlap
ChIP K-562 ENCSR910JAI.NCOR1.K-562 325 bp overlap
ChIP K562 ENCFF359DNT 325 bp overlap
ChIP K562 ENCFF788MPU 305 bp overlap
ChIP K562 ENCFF866HRM 370 bp overlap
NELFA 1 dataset
ChIP K-562_HS GSE112379.NELFA.K-562_HS 170 bp overlap
NFATC3 2 datasets
ChIP K-562 ENCSR051OUX.NFATC3.K-562 372 bp overlap
ChIP K562 ENCFF078EKB 344 bp overlap
NFE2 2 datasets
ChIP K562 ENCFF047YKA 300 bp overlap
ChIP K562 ENCFF163BSI 252 bp overlap
NFIC 2 datasets
ChIP K-562 ENCSR796ITY.NFIC.K-562 191 bp overlap
ChIP K562 ENCFF167YID 294 bp overlap
NR2C2 2 datasets
ChIP K562 ENCFF750AXF 372 bp overlap
ChIP K562 ENCFF750AXF 372 bp overlap
NR2F1 1 dataset
ChIP K562 ENCFF221HJH 356 bp overlap
NR2F2 2 datasets
ChIP K-562 ENCSR000BRS.NR2F2.K-562 227 bp overlap
ChIP K562 ENCFF004YPK 191 bp overlap
NR2F6 1 dataset
ChIP K562 ENCFF674RQA 340 bp overlap
NR4A1 1 dataset
ChIP K562 ENCFF998LHF 336 bp overlap
ONECUT1 1 dataset
ChIP HepG2 ENCFF243FIR 291 bp overlap
PBX2 3 datasets
ChIP K-562 ENCSR263DFP.PBX2.K-562 170 bp overlap
ChIP K562 ENCFF286KMN 302 bp overlap
ChIP K562 ENCFF286KMN 283 bp overlap
PHB2 1 dataset
ChIP K562 ENCFF772SGA 294 bp overlap
PKNOX1 2 datasets
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 185 bp overlap
ChIP K562 ENCFF236IUS 265 bp overlap
PML 1 dataset
ChIP K562 ENCFF801LKH 249 bp overlap
POLR2A 11 datasets
ChIP HepG2 ENCFF350RIU 192 bp overlap
ChIP HepG2 ENCFF350RIU 372 bp overlap
ChIP K562 ENCFF137JSF 306 bp overlap
ChIP K562 ENCFF137JSF 356 bp overlap
ChIP K562 ENCFF215CWW 221 bp overlap
ChIP K562 ENCFF262YXJ 372 bp overlap
ChIP K562 ENCFF514URW 229 bp overlap
ChIP K562 ENCFF836GHX 331 bp overlap
ChIP K562 ENCFF836GHX 372 bp overlap
ChIP erythroblast ENCFF498VMR 372 bp overlap
ChIP erythroblast ENCFF498VMR 372 bp overlap
PRDM10 1 dataset
ChIP K562 ENCFF740YLK 331 bp overlap
PYGO2 1 dataset
ChIP K562 ENCFF458IIA 303 bp overlap
RAD21 1 dataset
ChIP K562 ENCFF066JWO 241 bp overlap
RCOR1 2 datasets
ChIP K562 ENCFF216EEJ 146 bp overlap
ChIP K562 ENCFF721RTS 309 bp overlap
REST 1 dataset
ChIP K562 ENCFF430APM 231 bp overlap
RNF2 1 dataset
ChIP K562 ENCFF653BQJ 280 bp overlap
SAP130 1 dataset
ChIP HepG2 ENCFF892EHZ 225 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 173 bp overlap
SMAD4 1 dataset
ChIP K562 ENCFF628RBP 372 bp overlap
SMARCA4 3 datasets
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 372 bp overlap
ChIP K562 ENCFF316MCJ 231 bp overlap
ChIP K562 ENCFF506JCB 340 bp overlap
SMARCC2 1 dataset
ChIP K562 ENCFF368GSR 132 bp overlap
SMARCE1 2 datasets
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 372 bp overlap
ChIP K562 ENCFF690CFF 283 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 221 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 255 bp overlap
SOX6 1 dataset
ChIP K562 ENCFF059YCJ 264 bp overlap
SSRP1 1 dataset
ChIP HepG2 ENCFF540BLL 329 bp overlap
STAT5A 1 dataset
ChIP K562 ENCFF226BTJ 128 bp overlap
TAL1 7 datasets
ChIP K-562 ENCSR106FRG.TAL1.K-562 272 bp overlap
ChIP K-562 GSE107726.TAL1.K-562 257 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 253 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 87 bp overlap
ChIP K562 ENCFF620GMX 333 bp overlap
ChIP K562 ENCFF661CCK 147 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 259 bp overlap
TBL1XR1 1 dataset
ChIP K562 ENCFF899VEC 307 bp overlap
TCF12 4 datasets
ChIP K-562 ENCSR744WOO.TCF12.K-562 372 bp overlap
ChIP K-562 ENCSR189TRZ.TCF12.K-562 266 bp overlap
ChIP K562 ENCFF909RDY 255 bp overlap
ChIP K562 ENCFF931DJY 341 bp overlap
TCF3 1 dataset
ChIP K562 ENCFF319QZT 272 bp overlap
TEAD1 1 dataset
ChIP K562 ENCFF465AQA 75 bp overlap
TEAD4 1 dataset
ChIP K562 ENCFF673NIK 291 bp overlap
TRIM24 2 datasets
ChIP K562 ENCFF284DKY 328 bp overlap
ChIP K562 ENCFF616RIL 241 bp overlap
TRIM25 1 dataset
ChIP K562 ENCFF537QZW 307 bp overlap
TRIM28 2 datasets
ChIP K-562 ENCSR000BRW.TRIM28.K-562 253 bp overlap
ChIP K562 ENCFF172UPN 107 bp overlap
VEZF1 1 dataset
ChIP K562 ENCFF053XDV 372 bp overlap
ZBTB11 1 dataset
ChIP K562 ENCFF215OUF 372 bp overlap
ZBTB2 1 dataset
ChIP K562 ENCFF290ESQ 360 bp overlap
ZBTB33 1 dataset
ChIP K562 ENCFF427SDV 372 bp overlap
ZBTB9 1 dataset
ChIP K562 ENCFF233EFX 303 bp overlap
ZEB2 1 dataset
ChIP K562 ENCFF975RXS 356 bp overlap
ZMIZ1 1 dataset
ChIP K562 ENCFF647WJV 285 bp overlap
ZNF134 1 dataset
ChIP K562 ENCFF502NWS 217 bp overlap
ZNF197 1 dataset
ChIP K562 ENCFF872BAU 372 bp overlap
ZNF239 1 dataset
ChIP K562 ENCFF703IKI 231 bp overlap
ZNF24 1 dataset
ChIP K562 ENCFF877JCX 372 bp overlap
ZNF281 1 dataset
ChIP K562 ENCFF594VNM 227 bp overlap
ZNF584 1 dataset
ChIP K562 ENCFF771INO 372 bp overlap
ZNF589 1 dataset
ChIP K562 ENCFF770FHN 372 bp overlap
ZNF592 1 dataset
ChIP K562 ENCFF547OSS 372 bp overlap
ZNF639 1 dataset
ChIP K562 ENCFF271FQR 372 bp overlap
ZNF766 1 dataset
ChIP K562 ENCFF348LDO 372 bp overlap
ZNF800 1 dataset
ChIP HepG2 ENCFF840FYM 67 bp overlap