chr1 : 6,466,065 – 6,466,457
392 bp 116 TFs 1 linked gene
This 392 bp open chromatin element is linked to TNFRSF25 and is bound by 116 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
TNFRSF25 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:6,461,065 – 6,471,457
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
116 transcription factors
Source
Cell type
AGO1 4 datasets
ChIP HepG2 ENCFF277EOU 392 bp overlap
ChIP HepG2 ENCFF358CXO 392 bp overlap
ChIP K-562 ENCSR641BSL.AGO1.K-562 147 bp overlap
ChIP K-562 GSE120104.AGO1.K-562 98 bp overlap
ARNT 1 dataset
ChIP RCC4 GSE85352.ARNT.RCC4 220 bp overlap
ASCL1 1 dataset
Motif ES_0h ES_0h-ASCL1_MA1631.2 9 bp overlap
ASH2L 4 datasets
ChIP H1 ENCFF399KAM 382 bp overlap
ChIP H1 ENCFF399KAM 392 bp overlap
ChIP H1 ENCFF399KAM 386 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 392 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 221 bp overlap
BCL11B 1 dataset
ChIP PBMC_T-reg GSE120872.BCL11B.PBMC_T-reg 152 bp overlap
BCL6 1 dataset
ChIP CD4 GSE59933.BCL6.CD4 313 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 381 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 392 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 392 bp overlap
BHLHE40 1 dataset
ChIP GM12878 ENCSR987MTA.BHLHE40.GM12878 291 bp overlap
BRD4 11 datasets
ChIP CD4_Th1_DMSO GSE62482.BRD4.CD4_Th1_DMSO 146 bp overlap
ChIP KOPT-K1 GSE54379.BRD4.KOPT-K1 95 bp overlap
ChIP KOPT-K1_E GSE54379.BRD4.KOPT-K1_E 157 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 348 bp overlap
ChIP MDA-MB-157 ERP003925.BRD4.MDA-MB-157 323 bp overlap
ChIP T-cell_DMSO GSE138084.BRD4.T-cell_DMSO 233 bp overlap
ChIP T-cell_iBET GSE138084.BRD4.T-cell_iBET 234 bp overlap
ChIP T-cell_iBET-BD1 GSE138084.BRD4.T-cell_iBET-BD1 154 bp overlap
ChIP T-cell_iBET-BD2 GSE138084.BRD4.T-cell_iBET-BD2 224 bp overlap
ChIP hESC GSE33281.BRD4.hESC 81 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 205 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 223 bp overlap
CDK8 1 dataset
ChIP SET-2 GSE65138.CDK8.SET-2 241 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 171 bp overlap
CHD1 2 datasets
ChIP WA01 ENCSR000AQK.CHD1.WA01 184 bp overlap
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 204 bp overlap
CTCFL 2 datasets
Motif ES_0h ES_0h-CTCFL_MA1102.3 8 bp overlap
ChIP K-562 GSE70764.CTCFL.K-562 260 bp overlap
DDX5 1 dataset
ChIP NTERA2 GSE58641.DDX5.NTERA2 319 bp overlap
DPF2 1 dataset
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 238 bp overlap
E2F6 4 datasets
ChIP H1 ENCFF785DWK 365 bp overlap
ChIP K-562 ENCSR000BLI.E2F6.K-562 93 bp overlap
ChIP K562 ENCFF136LTS 294 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 392 bp overlap
ELF1 2 datasets
ChIP GM12878 ENCFF692SMY 301 bp overlap
ChIP ME-1 GSE46044.ELF1.ME-1 302 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000AUQ.EP300.WA01 165 bp overlap
ERG 7 datasets
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 258 bp overlap
ChIP K-562 GSE23730.ERG.K-562 188 bp overlap
ChIP K-562_DOX GSE23730.ERG.K-562_DOX 203 bp overlap
ChIP ME-1 GSE46044.ERG.ME-1 252 bp overlap
ChIP SKNO-1 GSE23730.ERG.SKNO-1 52 bp overlap
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 81 bp overlap
ChIP WTC11 ENCFF011YUL 281 bp overlap
ESR1 3 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 189 bp overlap
ChIP Ishikawa_E2_clone2 GSE132426.ESR1.Ishikawa_E2_clone2 374 bp overlap
ChIP Ishikawa_M2-3 GSE147141.ESR1.Ishikawa_M2-3 364 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 357 bp overlap
EZH1 1 dataset
ChIP ProEs_SHEZH2 GSE59087.EZH1.ProEs_SHEZH2 155 bp overlap
EZH2 7 datasets
ChIP DND41 ENCSR000ASW.EZH2.DND41 392 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 392 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 380 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 392 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 392 bp overlap
ChIP fibroblast_DERMAL ENCSR000ASE.EZH2.fibroblast_DERMAL 170 bp overlap
ChIP neural_progenitor ENCSR069DPL.EZH2.neural_progenitor 228 bp overlap
EZH2_phosphoT487 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR886KKK.EZH2_phosphoT487.neuron_bipolar_doxy_4d 392 bp overlap
FIGLA 1 dataset
Motif ES_0h ES_0h-FIGLA_MA0820.2 6 bp overlap
FLI1 1 dataset
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 112 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 356 bp overlap
GATAD2B 1 dataset
ChIP GM12878 ENCSR828NCB.GATAD2B.GM12878 317 bp overlap
GTF2F1 1 dataset
ChIP K562 ENCFF940JZP 256 bp overlap
HCFC1R1 1 dataset
ChIP cartilage GSE100311.HCFC1R1.cartilage 392 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 392 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 218 bp overlap
HMGB1 1 dataset
ChIP HUVEC-C GSE98245.HMGB1.HUVEC-C 181 bp overlap
HMGN3 1 dataset
ChIP K-562 ENCSR000DOB.HMGN3.K-562 189 bp overlap
HNRNPC 1 dataset
ChIP Hep-G2 GSE120104.HNRNPC.Hep-G2 217 bp overlap
IKZF1 1 dataset
ChIP GM12878 ENCFF824TGK 334 bp overlap
INO80 1 dataset
ChIP Hep-G2 GSE97411.INO80.Hep-G2 313 bp overlap
IRF4 1 dataset
ChIP T-cell GSE136853.IRF4.T-cell 188 bp overlap
JARID2 2 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 271 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 392 bp overlap
JUN 3 datasets
ChIP ESC S24-ESC-d0-JUN-exp1 281 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 304 bp overlap
ChIP Karpas-299 GSE151413.JUN.Karpas-299 182 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000BKP.JUND.WA01 145 bp overlap
KDM4A 3 datasets
ChIP H1 ENCFF078LED 392 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 352 bp overlap
ChIP hiPSC_IIA11 GSE106870.KDM4A.hiPSC_IIA11 231 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 274 bp overlap
KMT2A 1 dataset
ChIP blood_cord GSE83671.KMT2A.blood_cord 233 bp overlap
KMT2B 1 dataset
ChIP AML_OG86 GSE112074.KMT2B.AML_OG86 301 bp overlap
MAF 2 datasets
ChIP CD4_TH2 GSE72266.MAF.CD4_TH2 170 bp overlap
ChIP CD4_Th1 GSE72266.MAF.CD4_Th1 299 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 347 bp overlap
MBD2 1 dataset
ChIP HeLa GSE41006.MBD2.HeLa 127 bp overlap
MED1 1 dataset
ChIP UCSD-AML1 GSE154985.MED1.UCSD-AML1 261 bp overlap
MEF2D 1 dataset
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 307 bp overlap
NANOG 1 dataset
ChIP WA01 ENCSR000BMT.NANOG.WA01 178 bp overlap
NR2F2 2 datasets
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 392 bp overlap
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 392 bp overlap
NR3C1 1 dataset
ChIP WTC11 ENCFF422OEM 392 bp overlap
PAX5 2 datasets
ChIP GM12878 ENCSR000BHD.PAX5.GM12878 209 bp overlap
ChIP GM12891 ENCSR000BJH.PAX5.GM12891 141 bp overlap
PCBP1 2 datasets
ChIP K-562 ENCSR052PTN.PCBP1.K-562 276 bp overlap
ChIP K-562 GSE120104.PCBP1.K-562 238 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 392 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 370 bp overlap
POLR2A 2 datasets
ChIP GM23338 ENCFF450WCS 389 bp overlap
ChIP spleen ENCFF706IUS 357 bp overlap
POU5F1 5 datasets
ChIP BG03 GSE21614.POU5F1.BG03 102 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 392 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 214 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 215 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 289 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 392 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 392 bp overlap
RBFOX2 1 dataset
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 250 bp overlap
RELA 1 dataset
ChIP CD4_Th1_DMSO GSE62482.RELA.CD4_Th1_DMSO 151 bp overlap
REST 1 dataset
ChIP CD4 GSE49570.REST.CD4 311 bp overlap
RNF2 1 dataset
ChIP WA01 GSE104690.RNF2.WA01 204 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 392 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 392 bp overlap
RUNX1 4 datasets
ChIP AML_Blast GSE60130.RUNX1.AML_Blast 76 bp overlap
ChIP CD34 GSE64862.RUNX1.CD34 76 bp overlap
ChIP ME-1 GSE46044.RUNX1.ME-1 277 bp overlap
ChIP SKNO-1 GSE23730.RUNX1.SKNO-1 264 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 392 bp overlap
SIN3A 2 datasets
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 160 bp overlap
ChIP hiPSC_IID12 GSE106870.SIN3A.hiPSC_IID12 192 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 288 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 302 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 205 bp overlap
SMAD2_3 1 dataset
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 170 bp overlap
SMARCA4 1 dataset
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 274 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 173 bp overlap
SMARCC1 2 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 289 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 375 bp overlap
SP1 1 dataset
ChIP WTC11 ENCFF688PEU 392 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 206 bp overlap
SPI1 1 dataset
ChIP ME-1 GSE46044.SPI1.ME-1 312 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 348 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 369 bp overlap
SRSF7 1 dataset
ChIP Hep-G2 GSE120104.SRSF7.Hep-G2 186 bp overlap
STAT1 1 dataset
ChIP SET-2_DMSO GSE100566.STAT1.SET-2_DMSO 294 bp overlap
STAT5B 1 dataset
ChIP CD8_H9 GSE64713.STAT5B.CD8_H9 194 bp overlap
SUPT6H 1 dataset
ChIP HCT-116 GSE130509.SUPT6H.HCT-116 112 bp overlap
SUZ12 7 datasets
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 360 bp overlap
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 357 bp overlap
ChIP H1 ENCFF881NFR 392 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 338 bp overlap
ChIP K562 ENCFF397TBJ 365 bp overlap
ChIP hiPSC GSE124903.SUZ12.hiPSC 231 bp overlap
ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 354 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 310 bp overlap
TAL1 1 dataset
ChIP ME-1 GSE46044.TAL1.ME-1 276 bp overlap
TBP 1 dataset
ChIP WA01 ENCSR000ECB.TBP.WA01 249 bp overlap
TCF12 2 datasets
ChIP ME-1 GSE46044.TCF12.ME-1 236 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 238 bp overlap
TCF4 1 dataset
Motif ES_0h ES_0h-TCF4_MA0830.3 8 bp overlap
TCF7 2 datasets
ChIP WTC11 ENCFF431UYL 357 bp overlap
ChIP WTC11 ENCFF431UYL 131 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 392 bp overlap
TGIF2 1 dataset
ChIP WTC11 ENCFF649SHI 374 bp overlap
THAP1 1 dataset
ChIP K-562 ENCSR000BNN.THAP1.K-562 91 bp overlap
TP53 1 dataset
ChIP WTC11 ENCFF359JCU 392 bp overlap
TRIM24 1 dataset
ChIP LNCaP-abl_ETOH GSE69331.TRIM24.LNCaP-abl_ETOH 208 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 301 bp overlap
TRIM28 1 dataset
ChIP HCT-116 GSE72622.TRIM28.HCT-116 245 bp overlap
UBTF 2 datasets
ChIP K-562 ENCSR000EFZ.UBTF.K-562 177 bp overlap
ChIP K-562 ENCSR000EFW.UBTF.K-562 148 bp overlap
USF2 1 dataset
ChIP WTC11 ENCFF139JAW 347 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 326 bp overlap
YY1 1 dataset
ChIP Hep-G2 ENCSR000BNT.YY1.Hep-G2 141 bp overlap
ZBTB33 1 dataset
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 174 bp overlap
ZBTB7A 1 dataset
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 208 bp overlap
ZEB1 1 dataset
Motif ES_0h ES_0h-ZEB1_MA0103.4 6 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 391 bp overlap
ZNF184 1 dataset
ChIP WTC11 ENCFF352POG 392 bp overlap
ZNF19 1 dataset
ChIP HEK293T GSE78099.ZNF19.HEK293T 294 bp overlap
ZNF407 1 dataset
ChIP Hep-G2 ENCSR005WGY.ZNF407.Hep-G2 159 bp overlap
ZNF416 1 dataset
ChIP WTC11 ENCFF407TAZ 271 bp overlap
ZNF532 1 dataset
ChIP WTC11 ENCFF373VBX 211 bp overlap
ZNF550 1 dataset
ChIP Hep-G2 ENCSR198BHH.ZNF550.Hep-G2 163 bp overlap
ZNF605 1 dataset
ChIP HEK293T GSE78099.ZNF605.HEK293T 240 bp overlap
ZNF768 1 dataset
Motif ES_0h ES_0h-ZNF768_MA1731.2 9 bp overlap
ZNF777 1 dataset
ChIP Hep-G2 ENCSR068ZQR.ZNF777.Hep-G2 253 bp overlap
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