chr17:47,902,020–47,902,508

chr17 : 47,902,020 – 47,902,508

488 bp 101 TFs 10 linked genes

This 488 bp open chromatin element is linked to 10 target genes and is bound by 101 transcription factors.

Linked Genes

10 genes

Gene	Expression	Dist. to TSS	Distance	Link type
SP2		5.8 kb	Proximal	Proximity
SP2-DT		6.2 kb	Proximal	Proximity
SCRN2		60.9 kb	Distal	Multiome
CDK5RAP3		68.9 kb	Distal	Multiome
MRPL10		70.6 kb	Distal	Multiome
NFE2L1		146.2 kb	Distal	Multiome
CBX1		199.2 kb	Distal	Multiome
SNX11		205.4 kb	Distal	Multiome
KPNB1		252.7 kb	Distal	Multiome
KPNB1-DT		252.7 kb	Distal	Multiome

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

101 transcription factors

ARHGAP35 2 datasets

ChIP K-562 ENCSR571BUF.ARHGAP35.K-562 52 bp overlap

ChIP K562 ENCFF198TWI 92 bp overlap

ARID1B 2 datasets

ChIP K-562 ENCSR822CCM.ARID1B.K-562 299 bp overlap

ChIP K562 ENCFF938UXQ 120 bp overlap

ASH2L 1 dataset

ChIP WA01 ENCSR850KIP.ASH2L.WA01 443 bp overlap

ChIP WA01 ENCSR000BQU.ATF2.WA01 249 bp overlap

BACH1 1 dataset

ChIP H1 ENCFF282VDB 313 bp overlap

BCL11A 2 datasets

ChIP H1 ENCFF833IPY 145 bp overlap

ChIP WA01 ENCSR000BIP.BCL11A.WA01 126 bp overlap

ChIP K-562 ENCSR808AKZ.BCOR.K-562 75 bp overlap

ChIP K-562_DMSO GSE138084.BRD3.K-562_DMSO 70 bp overlap

CBFA2T2 2 datasets

ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 103 bp overlap

ChIP K562 ENCFF963TXY 71 bp overlap

CBFA2T3 2 datasets

ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 192 bp overlap

ChIP K562 ENCFF673OEZ 130 bp overlap

CEBPB 1 dataset

ChIP WA01 ENCSR000EBV.CEBPB.WA01 124 bp overlap

ChIP WA01 ENCSR000AQK.CHD1.WA01 122 bp overlap

ChIP WA01 ENCSR000EBT.CHD2.WA01 120 bp overlap

ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 251 bp overlap

CREB1 7 datasets

ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 198 bp overlap

ChIP MCF-7 ENCFF341ZEM 385 bp overlap

ChIP MCF-7 ENCFF341ZEM 185 bp overlap

ChIP MCF-7 ENCFF867SAS 417 bp overlap

ChIP MCF-7 ENCSR897JAS.CREB1.MCF-7 407 bp overlap

ChIP MCF-7 ENCSR620DUQ.CREB1.MCF-7 294 bp overlap

ChIP WA01 ENCSR000BSN.CREB1.WA01 140 bp overlap

CTBP1 2 datasets

ChIP K-562 ENCSR201NQZ.CTBP1.K-562 132 bp overlap

ChIP K562 ENCFF403WPG 248 bp overlap

ChIP K562 ENCFF775HUO 63 bp overlap

ChIP GM12878 ENCSR439WAF.E4F1.GM12878 384 bp overlap

EGR1 2 datasets

ChIP H1 ENCFF451BLH 261 bp overlap

ChIP K-562 ENCSR211LTF.EGR1.K-562 50 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 324 bp overlap

EP300 3 datasets

ChIP H1 ENCFF927IYK 297 bp overlap

ChIP K562 ENCFF226VMS 105 bp overlap

ChIP WA01 ENCSR000AUQ.EP300.WA01 152 bp overlap

ESRRA 3 datasets

ChIP K-562 ENCSR486IFJ.ESRRA.K-562 308 bp overlap

ChIP K562 ENCFF968PEP 126 bp overlap

ChIP MCF-7 ENCSR337NQP.ESRRA.MCF-7 251 bp overlap

ESRRG 1 dataset

ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 263 bp overlap

ETS1 3 datasets

ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 488 bp overlap

ChIP cardiomyocyte_D5 GSE129986.ETS1.cardiomyocyte_D5 210 bp overlap

ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 160 bp overlap

FEZF1 2 datasets

ChIP HEK293 ENCFF528YED 441 bp overlap

ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 378 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 488 bp overlap

ChIP DE DE-FOXA2-2 488 bp overlap

FOXA3 1 dataset

ChIP K562 ENCFF348SOM 228 bp overlap

FOXP1 1 dataset

ChIP H9 GSE31006.FOXP1.H9 127 bp overlap

GATA1 3 datasets

ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 68 bp overlap

ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 52 bp overlap

ChIP K-562 GSE107726.GATA1.K-562 53 bp overlap

GATA4 4 datasets

ChIP DE DE-GATA4-1 488 bp overlap

ChIP DE DE-GATA4-2 488 bp overlap

ChIP foregut GSE117136.GATA4.foregut 488 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 145 bp overlap

GATA6 12 datasets

ChIP DE DE-GATA6-1 488 bp overlap

ChIP DE DE-GATA6-2 488 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 488 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 475 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 429 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 488 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 488 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 486 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 387 bp overlap

ChIP foregut GSE117136.GATA6.foregut 488 bp overlap

ChIP foregut_KO GSE117136.GATA6.foregut_KO 370 bp overlap

ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 488 bp overlap

GATAD2B 1 dataset

ChIP MCF-7 ENCSR979FQP.GATAD2B.MCF-7 299 bp overlap

GFI1B 1 dataset

ChIP K-562 ENCSR509GDT.GFI1B.K-562 117 bp overlap

GLIS3 1 dataset

ChIP H9_plus GSE109562.GLIS3.H9_plus 488 bp overlap

HDAC1 4 datasets

ChIP K-562 ENCSR387UWP.HDAC1.K-562 177 bp overlap

ChIP K-562 ENCSR711VWL.HDAC1.K-562 91 bp overlap

ChIP K562 ENCFF928TKZ 73 bp overlap

ChIP K562 ENCFF968WBH 92 bp overlap

HDAC2 7 datasets

ChIP H1 ENCFF939VKA 237 bp overlap

ChIP K-562 ENCSR893WSB.HDAC2.K-562 294 bp overlap

ChIP K-562 ENCSR000BMG.HDAC2.K-562 103 bp overlap

ChIP K-562 ENCSR075HTM.HDAC2.K-562 88 bp overlap

ChIP K562 ENCFF738SPU 91 bp overlap

ChIP K562 ENCFF744ALD 131 bp overlap

ChIP WA01 ENCSR000BNR.HDAC2.WA01 205 bp overlap

HDGF 2 datasets

ChIP MCF-7 ENCFF179XHG 62 bp overlap

ChIP MCF-7 ENCSR200CUA.HDGF.MCF-7 168 bp overlap

HOXB8 1 dataset

ChIP K-562 GSE121208.HOXB8.K-562 71 bp overlap

IKZF1 3 datasets

ChIP K-562 ENCSR395HWC.IKZF1.K-562 179 bp overlap

ChIP K562 ENCFF348IBL 115 bp overlap

ChIP K562 ENCFF771OHZ 111 bp overlap

JARID2 1 dataset

ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 195 bp overlap

ChIP DE_D1 S40-DE-d1-JUN-exp2 357 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 488 bp overlap

ChIP DE_D2 S54-DE-d2-JUN-exp2 369 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 339 bp overlap

ChIP WA01 ENCSR000EBZ.JUND.WA01 161 bp overlap

KDM1A 5 datasets

ChIP K-562 ENCSR908CMW.KDM1A.K-562 194 bp overlap

ChIP K-562 ENCSR360HRA.KDM1A.K-562 125 bp overlap

ChIP K562 ENCFF128TYE 119 bp overlap

ChIP K562 ENCFF133OLU 101 bp overlap

ChIP K562 ENCFF934ZRG 192 bp overlap

KLF5 2 datasets

ChIP HEK293_E419Q GSE88976.KLF5.HEK293_E419Q 167 bp overlap

ChIP HEK293_E419Q GSE88976.KLF5.HEK293_E419Q 118 bp overlap

ChIP K562 ENCFF198WCP 164 bp overlap

ChIP H1 ENCFF914VQY 357 bp overlap

MEIS2 2 datasets

ChIP K-562 ENCSR851BNE.MEIS2.K-562 198 bp overlap

ChIP K562 ENCFF320GSD 147 bp overlap

ChIP K562 ENCFF880VZB 89 bp overlap

MYOD1 2 datasets

ChIP RH4 GSE83726.MYOD1.RH4 215 bp overlap

ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 207 bp overlap

NANOG 7 datasets

ChIP H1 ENCFF747ZPQ 241 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 471 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 341 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 156 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 477 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 303 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 242 bp overlap

NCOR1 3 datasets

ChIP K-562 ENCSR798ILC.NCOR1.K-562 94 bp overlap

ChIP K562 ENCFF788MPU 166 bp overlap

ChIP K562 ENCFF866HRM 182 bp overlap

ChIP MCF-7 ENCSR582ZOA.NFIB.MCF-7 280 bp overlap

NKX2-5 1 dataset

ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 56 bp overlap

ChIP MCF-7 ENCSR912NMR.NONO.MCF-7 199 bp overlap

NR2C1 3 datasets

ChIP K-562 ENCSR742IDN.NR2C1.K-562 225 bp overlap

ChIP K-562 ENCSR178DEG.NR2C1.K-562 186 bp overlap

ChIP K562 ENCFF568JLK 229 bp overlap

NR2F1 2 datasets

ChIP K-562 ENCSR970NKQ.NR2F1.K-562 284 bp overlap

ChIP K562 ENCFF221HJH 215 bp overlap

NR2F2 2 datasets

ChIP K-562 ENCSR000BRS.NR2F2.K-562 133 bp overlap

ChIP K562 ENCFF004YPK 197 bp overlap

NR2F6 2 datasets

ChIP Hep-G2 ENCSR518WPL.NR2F6.Hep-G2 236 bp overlap

ChIP K-562 ENCSR707QWA.NR2F6.K-562 239 bp overlap

PBX2 2 datasets

ChIP K-562 ENCSR263DFP.PBX2.K-562 194 bp overlap

ChIP K562 ENCFF286KMN 132 bp overlap

PKNOX1 7 datasets

ChIP HEK293T ENCFF174WDB 184 bp overlap

ChIP HEK293T ENCFF174WDB 206 bp overlap

ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 403 bp overlap

ChIP K-562 ENCSR115SMW.PKNOX1.K-562 446 bp overlap

ChIP K562 ENCFF236IUS 108 bp overlap

ChIP MCF-7 ENCFF116OCS 393 bp overlap

ChIP MCF-7 ENCSR986XYK.PKNOX1.MCF-7 347 bp overlap

ChIP K-562 ENCSR000BQY.PML.K-562 92 bp overlap

POLR2A 2 datasets

ChIP GM12891 ENCFF379FCI 466 bp overlap

ChIP H1 ENCFF833NJP 411 bp overlap

POU5F1 5 datasets

ChIP DE_D1 DED1-OCT4_Batch_II 326 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 321 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 318 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 328 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 168 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 347 bp overlap

PRDM1 1 dataset

ChIP HEK293 ENCFF302TBP 405 bp overlap

PRDM10 1 dataset

ChIP HEK293 ENCFF145WQQ 318 bp overlap

RCOR1 1 dataset

ChIP K562 ENCFF216EEJ 118 bp overlap

SIN3A 3 datasets

ChIP H1 ENCFF042ZSL 473 bp overlap

ChIP WA01 ENCSR000EBO.SIN3A.WA01 324 bp overlap

ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 229 bp overlap

SMAD2-3 3 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 488 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 385 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 307 bp overlap

SMAD2_3 5 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 188 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 250 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 291 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 368 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 370 bp overlap

SMAD3 2 datasets

ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 162 bp overlap

ChIP endoderm GSE29422.SMAD3.endoderm 173 bp overlap

SMARCA4 4 datasets

ChIP K-562 ENCSR587OQL.SMARCA4.K-562 93 bp overlap

ChIP K562 ENCFF506JCB 203 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 334 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 331 bp overlap

SMARCB1 2 datasets

ChIP hiPSC GSE124903.SMARCB1.hiPSC 262 bp overlap

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 452 bp overlap

SMARCC1 3 datasets

ChIP DE_D1 S15-DE-d1-BAF155-exp1 178 bp overlap

ChIP hiPSC GSE124903.SMARCC1.hiPSC 317 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 357 bp overlap

SMARCE1 1 dataset

ChIP K-562 ENCSR157TCS.SMARCE1.K-562 122 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 420 bp overlap

SOX2 2 datasets

ChIP HNSC GSE69479.SOX2.HNSC 401 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 334 bp overlap

ChIP H1 ENCFF263FUH 321 bp overlap

ChIP WA01 ENCSR000BIR.SP1.WA01 137 bp overlap

ChIP WA01 ENCSR000BQV.SP4.WA01 158 bp overlap

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 292 bp overlap

ChIP H9_MESODERM GSE60606.T.H9_MESODERM 244 bp overlap

TAL1 5 datasets

ChIP K-562 GSE107726.TAL1.K-562 90 bp overlap

ChIP K-562 ENCSR106FRG.TAL1.K-562 87 bp overlap

ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 83 bp overlap

ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 52 bp overlap

ChIP K562 ENCFF661CCK 69 bp overlap

TCF12 4 datasets

ChIP H1 ENCFF203EBH 251 bp overlap

ChIP K-562 ENCSR744WOO.TCF12.K-562 90 bp overlap

ChIP K562 ENCFF931DJY 183 bp overlap

ChIP WA01 ENCSR000BIT.TCF12.WA01 149 bp overlap

TCF3 2 datasets

ChIP K-562 ENCSR970OJY.TCF3.K-562 108 bp overlap

ChIP K562 ENCFF319QZT 160 bp overlap

TEAD1 1 dataset

ChIP WTC11 ENCFF502QUV 405 bp overlap

TEAD4 2 datasets

ChIP ESC S26-ESC-d0-TEAD4-exp1 267 bp overlap

ChIP H1 ENCFF778PAX 141 bp overlap

TRIM28 1 dataset

ChIP K562 ENCFF172UPN 133 bp overlap

VEZF1 2 datasets

ChIP K-562 ENCSR189YMA.VEZF1.K-562 86 bp overlap

ChIP K562 ENCFF053XDV 318 bp overlap

XRCC5 2 datasets

ChIP K-562 GSE120104.XRCC5.K-562 192 bp overlap

ChIP K-562 ENCSR506KWJ.XRCC5.K-562 188 bp overlap

ChIP H1 ENCFF524BTL 337 bp overlap

ChIP K-562 ENCSR000BMH.YY1.K-562 125 bp overlap

ChIP K-562 ENCSR000BMH.YY1.K-562 83 bp overlap

ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 135 bp overlap

ChIP WA01 ENCSR000BKD.YY1.WA01 207 bp overlap

ZEB2 4 datasets

ChIP K-562 ENCSR322CFO.ZEB2.K-562 316 bp overlap

ChIP K-562 ENCSR004GKA.ZEB2.K-562 233 bp overlap

ChIP K562 ENCFF795CMH 86 bp overlap

ChIP K562 ENCFF975RXS 82 bp overlap

ChIP HEK293 ENCFF033NQQ 341 bp overlap

ZKSCAN1 1 dataset

ChIP MCF-7 ENCSR449UFF.ZKSCAN1.MCF-7 251 bp overlap

ZNF207 1 dataset

ChIP WA09 GSE118632.ZNF207.WA09 282 bp overlap

ZNF316 1 dataset

ChIP K562 ENCFF838QCD 121 bp overlap

ZNF341 3 datasets

ChIP HEK293 ENCFF944VMC 271 bp overlap

ChIP HEK293 ENCFF944VMC 392 bp overlap

ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 360 bp overlap

ZNF366 1 dataset

ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 269 bp overlap

ZNF398 1 dataset

ChIP H9 GSE133630.ZNF398.H9 154 bp overlap

ZNF423 1 dataset

ChIP WTC11 ENCFF574PBR 317 bp overlap

ZNF444 1 dataset

ChIP MCF-7 ENCSR038XIA.ZNF444.MCF-7 227 bp overlap

ZNF467 1 dataset

ChIP HEK293 GSE76494.ZNF467.HEK293 267 bp overlap

ZNF512B 2 datasets

ChIP MCF-7 ENCSR761LRR.ZNF512B.MCF-7 310 bp overlap

ChIP MCF-7 ENCSR555DCF.ZNF512B.MCF-7 240 bp overlap