chr1 : 230,984,729 230,985,047
318 bp 107 TFs 2 linked genes
This 318 bp open chromatin element is linked to ARV1 and TTC13 and is bound by 107 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
ARV1 5.6 kb Proximal Proximity
TTC13 5.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:230,979,729 – 230,990,047
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
107 transcription factors
Source
Cell type
AFF1 1 dataset
ChIP K562 ENCFF583EEH 142 bp overlap
ARID1B 1 dataset
ChIP K562 ENCFF938UXQ 318 bp overlap
ARNT 1 dataset
ChIP K562 ENCFF291CXK 133 bp overlap
ATF1 3 datasets
ChIP K562 ENCFF817JQF 318 bp overlap
ChIP K562 ENCFF817JQF 109 bp overlap
ChIP K562 ENCFF980NSF 224 bp overlap
ATF3 1 dataset
ChIP K562 ENCFF921JQW 218 bp overlap
ATF7 1 dataset
ChIP K562 ENCFF308SKS 165 bp overlap
BCOR 2 datasets
ChIP K562 ENCFF343XWA 262 bp overlap
ChIP WA01 GSE104690.BCOR.WA01 154 bp overlap
CAMTA2 1 dataset
ChIP K562 ENCFF975FJR 117 bp overlap
CBFA2T2 1 dataset
ChIP K562 ENCFF963TXY 237 bp overlap
CBFA2T3 2 datasets
ChIP K-562 GSE142227.CBFA2T3.K-562 69 bp overlap
ChIP K562 ENCFF673OEZ 318 bp overlap
CCNT2 1 dataset
ChIP K-562 ENCSR000DOA.CCNT2.K-562 121 bp overlap
CDX2 3 datasets
ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 114 bp overlap
ChIP LS180 GSE31939.CDX2.LS180 131 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 202 bp overlap
CEBPB 4 datasets
ChIP H1 ENCFF871PTR 200 bp overlap
ChIP K562 ENCFF189VBN 211 bp overlap
ChIP K562 ENCFF194QGF 82 bp overlap
ChIP K562 ENCFF584CTB 287 bp overlap
CTBP1 1 dataset
ChIP K562 ENCFF403WPG 318 bp overlap
CXXC5 1 dataset
ChIP K562 ENCFF497CZN 318 bp overlap
DDIT3 1 dataset
ChIP K562 ENCFF341NJI 67 bp overlap
DPF2 3 datasets
ChIP K562 ENCFF739JDE 269 bp overlap
ChIP K562 ENCFF739JDE 67 bp overlap
ChIP K562 ENCFF775HUO 318 bp overlap
E4F1 1 dataset
ChIP K562 ENCFF622HMZ 269 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 213 bp overlap
EP300 1 dataset
ChIP K-562 ENCSR000EGE.EP300.K-562 196 bp overlap
ESRRA 1 dataset
ChIP K562 ENCFF968PEP 298 bp overlap
ETV5 1 dataset
ChIP K562 ENCFF336FFA 268 bp overlap
FOSL1 1 dataset
ChIP K562 ENCFF455MKD 116 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 318 bp overlap
ChIP DE DE-FOXA2-2 318 bp overlap
FOXA3 1 dataset
ChIP K562 ENCFF781VSC 202 bp overlap
FOXJ2 2 datasets
ChIP K562 ENCFF457GZC 231 bp overlap
ChIP K562 ENCFF457GZC 249 bp overlap
FOXK2 1 dataset
ChIP K562 ENCFF851PFH 262 bp overlap
FOXM1 2 datasets
ChIP K562 ENCFF255RHV 221 bp overlap
ChIP K562 ENCFF255RHV 50 bp overlap
GATA1 5 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 64 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 191 bp overlap
ChIP K562 ENCFF094CMK 211 bp overlap
ChIP erythroblast ENCFF867JAR 100 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 165 bp overlap
GATA2 5 datasets
ChIP K-562 ENCSR000BKM.GATA2.K-562 136 bp overlap
ChIP K-562 ENCSR000DKA.GATA2.K-562 84 bp overlap
ChIP K562 ENCFF544PCK 222 bp overlap
ChIP K562 ENCFF830LLA 312 bp overlap
ChIP K562 ENCFF830LLA 97 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 318 bp overlap
ChIP DE DE-GATA4-2 318 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 318 bp overlap
ChIP DE DE-GATA6-2 318 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 318 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 318 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 318 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 318 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 318 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 318 bp overlap
GATAD2B 1 dataset
ChIP K562 ENCFF696VMK 295 bp overlap
GMEB1 2 datasets
ChIP K562 ENCFF705LHX 318 bp overlap
ChIP K562 ENCFF705LHX 92 bp overlap
GTF2E2 1 dataset
ChIP K562 ENCFF741URT 318 bp overlap
HDAC1 3 datasets
ChIP K562 ENCFF928TKZ 310 bp overlap
ChIP K562 ENCFF968WBH 288 bp overlap
ChIP K562 ENCFF968WBH 151 bp overlap
HDAC2 2 datasets
ChIP K562 ENCFF744ALD 213 bp overlap
ChIP K562 ENCFF919OMP 146 bp overlap
HDAC3 1 dataset
ChIP K562 ENCFF713GIR 309 bp overlap
HES1 1 dataset
ChIP K562 ENCFF919JVU 286 bp overlap
HMBOX1 2 datasets
ChIP K562 ENCFF055GAZ 121 bp overlap
ChIP K562 ENCFF317JJX 111 bp overlap
ID3 1 dataset
ChIP K562 ENCFF170RNI 302 bp overlap
IKZF1 1 dataset
ChIP K562 ENCFF348IBL 273 bp overlap
JUND 1 dataset
ChIP K562 ENCFF336RCR 190 bp overlap
KDM1A 2 datasets
ChIP K562 ENCFF128TYE 216 bp overlap
ChIP K562 ENCFF133OLU 240 bp overlap
KLF16 1 dataset
ChIP K562 ENCFF464PIV 225 bp overlap
L3MBTL2 1 dataset
ChIP K562 ENCFF320EQC 91 bp overlap
LCOR 1 dataset
ChIP K562 ENCFF340MHH 318 bp overlap
LDB1 1 dataset
ChIP K-562 GSE142227.LDB1.K-562 156 bp overlap
LEF1 1 dataset
ChIP K562 ENCFF198WCP 224 bp overlap
MAFG 1 dataset
ChIP K562 ENCFF455EEO 99 bp overlap
MBD2 1 dataset
ChIP K562 ENCFF217VLV 263 bp overlap
MEIS2 1 dataset
ChIP K562 ENCFF320GSD 99 bp overlap
MNT 2 datasets
ChIP K562 ENCFF820IGH 318 bp overlap
ChIP K562 ENCFF820IGH 103 bp overlap
MTA2 1 dataset
ChIP K562 ENCFF880VZB 132 bp overlap
MTA3 1 dataset
ChIP K562 ENCFF289UFB 296 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 243 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 131 bp overlap
ChIP H1 ENCFF747ZPQ 182 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 318 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 131 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 151 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 74 bp overlap
ChIP hESC GSE18292.NANOG.hESC 101 bp overlap
ChIP hESC GSE20650.NANOG.hESC 170 bp overlap
ChIP hESC GSE18292.NANOG.hESC 58 bp overlap
NBN 1 dataset
ChIP K562 ENCFF146YTY 134 bp overlap
NCOA1 2 datasets
ChIP K562 ENCFF962VHQ 121 bp overlap
ChIP K562 ENCFF962VHQ 57 bp overlap
NCOR1 4 datasets
ChIP K562 ENCFF359DNT 183 bp overlap
ChIP K562 ENCFF788MPU 235 bp overlap
ChIP K562 ENCFF866HRM 262 bp overlap
ChIP LS180 GSE39277.NCOR1.LS180 101 bp overlap
NCOR2 1 dataset
ChIP LS180 GSE39277.NCOR2.LS180 100 bp overlap
NFIC 1 dataset
ChIP K562 ENCFF167YID 198 bp overlap
NR2F1 2 datasets
ChIP K562 ENCFF221HJH 253 bp overlap
ChIP K562 ENCFF221HJH 126 bp overlap
NR2F2 2 datasets
ChIP K-562 ENCSR000BRS.NR2F2.K-562 122 bp overlap
ChIP K562 ENCFF004YPK 173 bp overlap
NR2F6 1 dataset
ChIP K562 ENCFF674RQA 171 bp overlap
PHB2 1 dataset
ChIP K562 ENCFF772SGA 93 bp overlap
POLR2A 3 datasets
ChIP GM23338 ENCFF450WCS 193 bp overlap
ChIP K562 ENCFF514URW 134 bp overlap
ChIP K562 ENCFF836GHX 197 bp overlap
POU5F1 6 datasets
ChIP GM23338 ENCFF333SNB 240 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 278 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 130 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 318 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 71 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 123 bp overlap
PRDM14 1 dataset
ChIP hESC GSE22767.PRDM14.hESC 318 bp overlap
RAD21 1 dataset
ChIP K562 ENCFF066JWO 236 bp overlap
RB1 1 dataset
ChIP K562 ENCFF627ZBG 247 bp overlap
RCOR1 1 dataset
ChIP K562 ENCFF216EEJ 236 bp overlap
REST 2 datasets
ChIP K562 ENCFF430APM 179 bp overlap
ChIP K562 ENCFF685YZN 84 bp overlap
RNF2 3 datasets
ChIP K562 ENCFF061ATI 295 bp overlap
ChIP K562 ENCFF653BQJ 253 bp overlap
ChIP K562 ENCFF653BQJ 57 bp overlap
SKIL 1 dataset
ChIP K562 ENCFF560QSF 127 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 97 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 286 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 262 bp overlap
SMAD4 1 dataset
ChIP K562 ENCFF628RBP 228 bp overlap
SMARCA4 2 datasets
ChIP K562 ENCFF316MCJ 316 bp overlap
ChIP K562 ENCFF316MCJ 76 bp overlap
SMARCC2 1 dataset
ChIP K562 ENCFF368GSR 318 bp overlap
SMARCE1 1 dataset
ChIP K562 ENCFF690CFF 223 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 318 bp overlap
SOX2 1 dataset
ChIP hESC GSE18292.SOX2.hESC 102 bp overlap
SOX6 1 dataset
ChIP K562 ENCFF059YCJ 315 bp overlap
SP1 3 datasets
ChIP H1 ENCFF263FUH 240 bp overlap
ChIP K562 ENCFF088XXV 123 bp overlap
ChIP K562 ENCFF365HQT 228 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
TAL1 4 datasets
ChIP K-562 ENCSR000EHB.TAL1.K-562 114 bp overlap
ChIP K562 ENCFF620GMX 266 bp overlap
ChIP K562 ENCFF661CCK 72 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 124 bp overlap
TBL1XR1 1 dataset
ChIP K562 ENCFF899VEC 251 bp overlap
TCF12 2 datasets
ChIP K562 ENCFF909RDY 231 bp overlap
ChIP K562 ENCFF931DJY 256 bp overlap
TCF3 1 dataset
ChIP K562 ENCFF319QZT 205 bp overlap
TRIM24 1 dataset
ChIP K562 ENCFF616RIL 244 bp overlap
USF2 1 dataset
ChIP K562 ENCFF306QPU 318 bp overlap
VEZF1 1 dataset
ChIP K562 ENCFF053XDV 318 bp overlap
ZBTB9 1 dataset
ChIP K562 ENCFF233EFX 131 bp overlap
ZC3H8 1 dataset
ChIP K562 ENCFF495URH 106 bp overlap
ZEB2 1 dataset
ChIP K562 ENCFF975RXS 256 bp overlap
ZFP91 1 dataset
ChIP K562 ENCFF501CDP 199 bp overlap
ZFX 2 datasets
ChIP K562 ENCFF169LZT 318 bp overlap
ChIP K562 ENCFF536AJO 293 bp overlap
ZMIZ1 1 dataset
ChIP K562 ENCFF647WJV 252 bp overlap
ZNF148 2 datasets
ChIP K-562 ENCSR018MSO.ZNF148.K-562 56 bp overlap
ChIP K562 ENCFF352SDL 204 bp overlap
ZNF212 1 dataset
ChIP K562 ENCFF640NBC 78 bp overlap
ZNF281 1 dataset
ChIP K562 ENCFF594VNM 318 bp overlap
ZNF395 2 datasets
ChIP K562 ENCFF464EIT 318 bp overlap
ChIP K562 ENCFF464EIT 173 bp overlap
ZNF397 1 dataset
ChIP K562 ENCFF203WSD 97 bp overlap
ZNF584 1 dataset
ChIP K562 ENCFF771INO 190 bp overlap
ZNF639 1 dataset
ChIP K562 ENCFF271FQR 70 bp overlap
ZNF766 2 datasets
ChIP K562 ENCFF348LDO 318 bp overlap
ChIP K562 ENCFF348LDO 318 bp overlap
ZSCAN29 2 datasets
ChIP K562 ENCFF797SOU 318 bp overlap
ChIP K562 ENCFF842XOY 274 bp overlap