chr12 : 109,069,700 109,070,229
529 bp 118 TFs 5 linked genes
This 529 bp open chromatin element is linked to 5 target genes and is bound by 118 transcription factors.
Linked Genes
5 genes
Gene Expression Dist. to TSS Distance Link type
USP30 17.4 kb Distal Multiome
ALKBH2 23.6 kb Distal Multiome
UNG 27.6 kb Distal Multiome
ACACB 84.7 kb Distal Multiome
SSH1 212.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:109,064,700 – 109,075,229
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
118 transcription factors
Source
Cell type
ARID4A 1 dataset
ChIP HepG2 ENCFF142DIE 463 bp overlap
ASH2L 4 datasets
ChIP H1 ENCFF399KAM 529 bp overlap
ChIP H1 ENCFF399KAM 507 bp overlap
ChIP Hep-G2 ENCSR508LMH.ASH2L.Hep-G2 82 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 529 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 261 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 96 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 412 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 379 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 443 bp overlap
BRD4 6 datasets
ChIP COLO-205 GSE73319.BRD4.COLO-205 503 bp overlap
ChIP HCT-15 GSE73319.BRD4.HCT-15 529 bp overlap
ChIP HT29 GSE73319.BRD4.HT29 529 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 255 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 362 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 330 bp overlap
CCAR2 2 datasets
ChIP Hep-G2 ENCSR247XFV.CCAR2.Hep-G2 294 bp overlap
ChIP Hep-G2 GSE120104.CCAR2.Hep-G2 179 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 96 bp overlap
CREBBP 1 dataset
ChIP LS180_125 GSE39277.CREBBP.LS180_125 81 bp overlap
CTCF 16 datasets
ChIP GP5D GSE51234.CTCF.GP5D 529 bp overlap
ChIP H9 ENCFF152GTF 161 bp overlap
ChIP HepG2 ENCFF757EKU 259 bp overlap
ChIP Peyer's patch ENCFF746TCR 357 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 210 bp overlap
ChIP colon_transverse ENCSR102CSD.CTCF.colon_transverse 529 bp overlap
ChIP colon_transverse ENCSR833FWC.CTCF.colon_transverse 419 bp overlap
ChIP endodermal cell ENCFF471YCZ 373 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 200 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 499 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 123 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 197 bp overlap
ChIP hiPSC_IIIB12 GSE106870.CTCF.hiPSC_IIIB12 130 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 174 bp overlap
ChIP neural progenitor cell ENCFF420RBO 345 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 265 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 281 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 102 bp overlap
DMAP1 1 dataset
ChIP Hep-G2 ENCSR670YPQ.DMAP1.Hep-G2 182 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 110 bp overlap
E4F1 1 dataset
ChIP GM12878 ENCSR439WAF.E4F1.GM12878 318 bp overlap
EGR1 2 datasets
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 384 bp overlap
ChIP HepG2 ENCFF674RQO 215 bp overlap
ELF1 1 dataset
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 76 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 132 bp overlap
EP300 3 datasets
ChIP Hep-G2 ENCSR000BLW.EP300.Hep-G2 131 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 174 bp overlap
ChIP WA01 ENCSR000AUQ.EP300.WA01 153 bp overlap
ERG 1 dataset
ChIP SKNO-1 GSE23730.ERG.SKNO-1 212 bp overlap
ESR1 2 datasets
ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 250 bp overlap
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 308 bp overlap
FOXA1 1 dataset
ChIP LS180 GSE140533.FOXA1.LS180 146 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-2 266 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 122 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 404 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 355 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 148 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 324 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 284 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 212 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 127 bp overlap
GMEB1 1 dataset
ChIP Hep-G2 ENCSR780OXL.GMEB1.Hep-G2 233 bp overlap
GTF2F1 2 datasets
ChIP Hep-G2 ENCSR382PVA.GTF2F1.Hep-G2 284 bp overlap
ChIP Hep-G2 GSE120104.GTF2F1.Hep-G2 284 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 487 bp overlap
HDAC2 4 datasets
ChIP Hep-G2 ENCSR000BMC.HDAC2.Hep-G2 188 bp overlap
ChIP HepG2 ENCFF087XCR 234 bp overlap
ChIP PC-3 GSE147455.HDAC2.PC-3 123 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 139 bp overlap
HNF1B 1 dataset
ChIP Hep-G2 ENCSR127XTZ.HNF1B.Hep-G2 263 bp overlap
HNF4A 14 datasets
ChIP GP5D GSE51234.HNF4A.GP5D 529 bp overlap
ChIP GP5D_SIRAD21 GSE51234.HNF4A.GP5D_SIRAD21 279 bp overlap
ChIP GP5D_SIRAD21 GSE51234.HNF4A.GP5D_SIRAD21 189 bp overlap
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 284 bp overlap
ChIP Hep-G2 ENCSR000BLF.HNF4A.Hep-G2 211 bp overlap
ChIP Hep-G2 ERP000209.HNF4A.Hep-G2 188 bp overlap
ChIP Hep-G2 ENCSR000EEU.HNF4A.Hep-G2 164 bp overlap
ChIP HepG2 ENCFF146SSF 311 bp overlap
ChIP HepG2 ENCFF669NAM 261 bp overlap
ChIP IM95 GSE114018.HNF4A.IM95 373 bp overlap
ChIP LoVo_PHASEM GSE51290.HNF4A.LoVo_PHASEM 394 bp overlap
ChIP LoVo_PHASES GSE51290.HNF4A.LoVo_PHASES 529 bp overlap
ChIP hiPSC GSE104613.HNF4A.hiPSC 278 bp overlap
ChIP liver ENCFF449HPV 220 bp overlap
HNF4G 3 datasets
ChIP Hep-G2 ENCSR000BNJ.HNF4G.Hep-G2 221 bp overlap
ChIP HepG2 ENCFF323ATZ 275 bp overlap
ChIP liver ENCSR297GII.HNF4G.liver 137 bp overlap
HNRNPL 4 datasets
ChIP Hep-G2 ENCSR315JJE.HNRNPL.Hep-G2 338 bp overlap
ChIP Hep-G2 GSE120104.HNRNPL.Hep-G2 340 bp overlap
ChIP HepG2 ENCFF671UYF 444 bp overlap
ChIP HepG2 ENCFF684GAM 444 bp overlap
HOXA3 1 dataset
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 266 bp overlap
INO80 1 dataset
ChIP Hep-G2 GSE107730.INO80.Hep-G2 368 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 221 bp overlap
JUN 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 367 bp overlap
JUND 2 datasets
ChIP GP5D GSE51234.JUND.GP5D 342 bp overlap
ChIP GP5D_SIRAD21 GSE51234.JUND.GP5D_SIRAD21 240 bp overlap
KDM1A 2 datasets
ChIP H1 ENCFF696SGD 469 bp overlap
ChIP H1 ENCFF696SGD 266 bp overlap
KDM5B 1 dataset
ChIP HepG2 ENCFF706LUI 529 bp overlap
KLF1 1 dataset
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 529 bp overlap
KLF16 1 dataset
ChIP HEK293 ENCSR397DQC.KLF16.HEK293 106 bp overlap
KLF5 3 datasets
ChIP ESO-26 GSE132680.KLF5.ESO-26 529 bp overlap
ChIP GP5D GSE51234.KLF5.GP5D 282 bp overlap
ChIP LoVo_PHASES GSE51290.KLF5.LoVo_PHASES 375 bp overlap
KLF7 1 dataset
Motif DE_12h DE_12h-KLF7_MA1959.2 8 bp overlap
KMT2A 1 dataset
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 133 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 357 bp overlap
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 143 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 210 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 163 bp overlap
MTA1 1 dataset
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 249 bp overlap
MYBL2 1 dataset
ChIP Hep-G2 ENCSR581KCO.MYBL2.Hep-G2 197 bp overlap
MYC 2 datasets
ChIP GP5D GSE51234.MYC.GP5D 230 bp overlap
ChIP LoVo_PHASES GSE51290.MYC.LoVo_PHASES 117 bp overlap
MYNN 1 dataset
ChIP Hep-G2 ENCSR398TMP.MYNN.Hep-G2 279 bp overlap
MZF1 1 dataset
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 83 bp overlap
NANOG 4 datasets
ChIP H1 ENCFF747ZPQ 226 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 364 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 344 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 294 bp overlap
NCBP1 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.NCBP1.DLD-1_NELFCD-AID 127 bp overlap
NELFCD 3 datasets
ChIP DLD-1_NELFCD-AID GSE144786.NELFCD.DLD-1_NELFCD-AID 529 bp overlap
ChIP DLD-1_NELFCD-AID_treated GSE144786.NELFCD.DLD-1_NELFCD-AID_treated 110 bp overlap
ChIP DLD-1_NELFE-AID GSE144786.NELFCD.DLD-1_NELFE-AID 91 bp overlap
NELFE 2 datasets
ChIP DLD-1_NELFCD-AID GSE144786.NELFE.DLD-1_NELFCD-AID 529 bp overlap
ChIP DLD-1_NELFE-AID GSE144786.NELFE.DLD-1_NELFE-AID 133 bp overlap
NFIA 1 dataset
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
NFIX 1 dataset
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
NFYB 1 dataset
ChIP Hep-G2 ENCSR935GZV.NFYB.Hep-G2 258 bp overlap
NIPBL 2 datasets
ChIP GP5D GSE51234.NIPBL.GP5D 529 bp overlap
ChIP GP5D_SIRAD21 GSE51234.NIPBL.GP5D_SIRAD21 154 bp overlap
PATZ1 1 dataset
ChIP HepG2 ENCFF723PFC 253 bp overlap
PHF5A 1 dataset
ChIP Hep-G2 ENCSR191TLD.PHF5A.Hep-G2 236 bp overlap
PHF8 1 dataset
ChIP Hep-G2 ENCSR604VAE.PHF8.Hep-G2 194 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 239 bp overlap
POLR2A 5 datasets
ChIP Peyer's patch ENCFF767HVN 101 bp overlap
ChIP Peyer's patch ENCFF990IYL 325 bp overlap
ChIP transverse colon ENCFF098HBD 145 bp overlap
ChIP transverse colon ENCFF193UMS 193 bp overlap
ChIP transverse colon ENCFF193UMS 298 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 268 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 280 bp overlap
RAD21 6 datasets
ChIP GP5D GSE51234.RAD21.GP5D 529 bp overlap
ChIP Hep-G2 ENCSR054FKH.RAD21.Hep-G2 119 bp overlap
ChIP Hep-G2 ENCSR000EEG.RAD21.Hep-G2 178 bp overlap
ChIP HepG2 ENCFF360ZSW 217 bp overlap
ChIP LoVo_PHASEM GSE51290.RAD21.LoVo_PHASEM 520 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 127 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 488 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 529 bp overlap
RBM39 3 datasets
ChIP Hep-G2 GSE120104.RBM39.Hep-G2 219 bp overlap
ChIP HepG2 ENCFF084YZE 342 bp overlap
ChIP HepG2 ENCFF801JUH 340 bp overlap
REST 4 datasets
ChIP GP5D GSE51234.REST.GP5D 297 bp overlap
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 529 bp overlap
ChIP colorectal-cancer_shCTRL_dissociated GSE112555.REST.colorectal-cancer_shCTRL_dissociated 529 bp overlap
ChIP colorectal-cancer_shCTRL_intact GSE112555.REST.colorectal-cancer_shCTRL_intact 529 bp overlap
RUNX1 2 datasets
ChIP Jurkat GSE85524.RUNX1.Jurkat 195 bp overlap
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 282 bp overlap
RXR 1 dataset
ChIP LS180_125 GSE31939.RXR.LS180_125 192 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 153 bp overlap
SFPQ 1 dataset
ChIP Hep-G2 GSE120104.SFPQ.Hep-G2 90 bp overlap
SMAD1 1 dataset
ChIP Hep-G2 ENCSR213QOZ.SMAD1.Hep-G2 433 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 339 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 427 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 529 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 329 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 273 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 231 bp overlap
SMC1A 1 dataset
ChIP Hep-G2 GSE76893.SMC1A.Hep-G2 240 bp overlap
SMC3 1 dataset
ChIP GP5D GSE51234.SMC3.GP5D 529 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 273 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 197 bp overlap
SOX6 3 datasets
ChIP Hep-G2 ENCSR766TSU.SOX6.Hep-G2 316 bp overlap
ChIP HepG2 ENCFF767OCK 440 bp overlap
ChIP HepG2 ENCFF767OCK 225 bp overlap
SP1 4 datasets
ChIP Hep-G2 ENCSR460YAM.SP1.Hep-G2 114 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 93 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 204 bp overlap
ChIP liver ENCFF769YSM 391 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 100 bp overlap
SUPT5H 2 datasets
ChIP DLD-1_NELFCD-AID_treated GSE144786.SUPT5H.DLD-1_NELFCD-AID_treated 529 bp overlap
ChIP DLD-1_NELFE-AID GSE144786.SUPT5H.DLD-1_NELFE-AID 529 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 189 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 247 bp overlap
TAF1 5 datasets
ChIP H1 ENCFF478SZO 188 bp overlap
ChIP H1 ENCFF478SZO 302 bp overlap
ChIP Hep-G2 ENCSR918OKK.TAF1.Hep-G2 196 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 243 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 221 bp overlap
TBP 1 dataset
ChIP H1 ENCFF859IIO 251 bp overlap
TEAD1 1 dataset
ChIP HEK293_siE1A GSE130135.TEAD1.HEK293_siE1A 163 bp overlap
TEAD4 2 datasets
ChIP H1 ENCFF778PAX 196 bp overlap
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 277 bp overlap
TFAP4 1 dataset
ChIP DLD-1 GSE46935.TFAP4.DLD-1 343 bp overlap
TRIM28 2 datasets
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 121 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 314 bp overlap
VDR 1 dataset
ChIP LS180_125 GSE31939.VDR.LS180_125 91 bp overlap
Wt1 1 dataset
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
XRCC5 1 dataset
ChIP HepG2 ENCFF330PDO 388 bp overlap
YY1 4 datasets
ChIP H1 ENCFF524BTL 170 bp overlap
ChIP Huh-7 GSE97411.YY1.Huh-7 157 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 88 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 169 bp overlap
ZBTB38 1 dataset
ChIP HepG2 ENCFF875UQX 504 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 173 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 439 bp overlap
ZNF143 1 dataset
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 179 bp overlap
ZNF148 1 dataset
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 489 bp overlap
ZNF257 2 datasets
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
ChIP HEK293T GSE78099.ZNF257.HEK293T 159 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 203 bp overlap
ZNF687 1 dataset
ChIP HepG2 ENCFF653WIX 383 bp overlap
ZNF770 5 datasets
ChIP HEK293 ENCFF468FCG 385 bp overlap
ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 317 bp overlap
ChIP HEK293 GSE76494.ZNF770.HEK293 388 bp overlap
ChIP Hep-G2 ENCSR510GKB.ZNF770.Hep-G2 387 bp overlap
ChIP HepG2 ENCFF233UVH 529 bp overlap