chr11:66,048,912–66,049,460

chr11 : 66,048,912 – 66,049,460

548 bp 83 TFs 21 linked genes

This 548 bp open chromatin element is linked to 21 target genes and is bound by 83 transcription factors.

Linked Genes

21 genes

Gene	Expression	Dist. to TSS	Distance	Link type
GAL3ST3		at TSS	At TSS	Proximity
SF3B2		2.9 kb	Proximal	Proximity
PACS1		21.1 kb	Distal	Multiome
BANF1		46.6 kb	Distal	Multiome
EIF1AD		47.0 kb	Distal	Multiome
SART1		87.4 kb	Distal	Multiome
DRAP1		129.7 kb	Distal	Multiome
C11orf68		130.1 kb	Distal	Multiome
CCDC85B		158.5 kb	Distal	Multiome
FIBP		160.7 kb	Distal	Multiome
EFEMP2		175.6 kb	Distal	Multiome
MUS81		188.7 kb	Distal	Multiome
CFL1		191.0 kb	Distal	Multiome
KLC2		208.6 kb	Distal	Multiome
SNX32		215.2 kb	Distal	Multiome
RAB1B		219.4 kb	Distal	Multiome
YIF1A		240.0 kb	Distal	Multiome
AP5B1		268.2 kb	Distal	Multiome
BRMS1		295.9 kb	Distal	Multiome
B4GAT1		298.5 kb	Distal	Multiome
B4GAT1-DT		299.1 kb	Distal	Multiome

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

83 transcription factors

ChIP breast_tumor_Male_20 GSE104399.AR.breast_tumor_Male_20 236 bp overlap

ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 301 bp overlap

ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 174 bp overlap

ARID2 1 dataset

ChIP Aska-SS_shSSX GSE108025.ARID2.Aska-SS_shSSX 302 bp overlap

ARID4B 1 dataset

ChIP WTC11 ENCFF441HDK 343 bp overlap

ARNTL 1 dataset

ChIP NSC_hNP1 GSE134972.ARNTL.NSC_hNP1 318 bp overlap

ASH2L 3 datasets

ChIP H1 ENCFF399KAM 546 bp overlap

ChIP WA01 ENCSR850KIP.ASH2L.WA01 264 bp overlap

ChIP WA01 ENCSR850KIP.ASH2L.WA01 113 bp overlap

ASXL3 1 dataset

ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 194 bp overlap

ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 193 bp overlap

BCOR 3 datasets

ChIP WA01 GSE104690.BCOR.WA01 231 bp overlap

ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 394 bp overlap

ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 548 bp overlap

BRD4 15 datasets

ChIP CLL_patient4_4h_CpG_BET GSE109411.BRD4.CLL_patient4_4h_CpG_BET 96 bp overlap

ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 369 bp overlap

ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 102 bp overlap

ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 518 bp overlap

ChIP MCF-10A ERP003925.BRD4.MCF-10A 433 bp overlap

ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 401 bp overlap

ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 378 bp overlap

ChIP T-47D ERP003925.BRD4.T-47D 330 bp overlap

ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 337 bp overlap

ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 370 bp overlap

ChIP hESC GSE33281.BRD4.hESC 262 bp overlap

ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 303 bp overlap

ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 321 bp overlap

ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 293 bp overlap

ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 548 bp overlap

ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 281 bp overlap

CREB1 1 dataset

ChIP WA01 ENCSR000BSN.CREB1.WA01 286 bp overlap

CTCF 20 datasets

ChIP A-673 ENCSR611JJS.CTCF.A-673 85 bp overlap

ChIP GM23338 ENCFF772DML 64 bp overlap

ChIP H9 ENCFF152GTF 177 bp overlap

ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 157 bp overlap

ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 139 bp overlap

ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 98 bp overlap

ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 61 bp overlap

ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 103 bp overlap

ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 146 bp overlap

ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 383 bp overlap

ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 382 bp overlap

ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 379 bp overlap

ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 438 bp overlap

ChIP endodermal cell ENCFF471YCZ 371 bp overlap

ChIP endothelial_umbilical-vein ENCSR000DVP.CTCF.endothelial_umbilical-vein 149 bp overlap

ChIP hESC_D5 GSE116862.CTCF.hESC_D5 279 bp overlap

ChIP keratinocyte GSE154221.CTCF.keratinocyte 303 bp overlap

ChIP neural ENCSR822CEA.CTCF.neural 239 bp overlap

ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 239 bp overlap

ChIP type B pancreatic cell ENCFF910FNQ 383 bp overlap

CTCFL 1 dataset

ChIP K-562 GSE70764.CTCFL.K-562 204 bp overlap

ChIP WA01 ENCSR000BSI.E2F6.WA01 211 bp overlap

EP300 1 dataset

ChIP osteoblast ENCSR000AUD.EP300.osteoblast 548 bp overlap

ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 185 bp overlap

ChIP MCF-7_estradiol_45min_ChIP-and-reChIP GSE99626.ESR1.MCF-7_estradiol_45min_ChIP-and-reChIP 354 bp overlap

ETS1 5 datasets

ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 263 bp overlap

ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 224 bp overlap

ChIP cardiomyocyte_D14 GSE129986.ETS1.cardiomyocyte_D14 180 bp overlap

ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 104 bp overlap

ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 179 bp overlap

EZH2 7 datasets

ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 345 bp overlap

ChIP astrocyte ENCFF365JTP 515 bp overlap

ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 548 bp overlap

ChIP fibroblast of lung ENCFF479BAW 231 bp overlap

ChIP fibroblast_DERMAL ENCSR000ASE.EZH2.fibroblast_DERMAL 548 bp overlap

ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 206 bp overlap

ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 96 bp overlap

FOXK1 1 dataset

ChIP WTC11 ENCFF875IGU 337 bp overlap

FOXP1 2 datasets

ChIP WTC11 ENCFF338WGC 467 bp overlap

ChIP WTC11 ENCFF338WGC 366 bp overlap

FOXP4 1 dataset

ChIP WTC11 ENCFF708TAF 249 bp overlap

GATA4 1 dataset

ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 270 bp overlap

GLIS3 1 dataset

ChIP H9_plus GSE109562.GLIS3.H9_plus 347 bp overlap

HDAC2 1 dataset

ChIP WA01 ENCSR000AVB.HDAC2.WA01 50 bp overlap

HEXIM1 1 dataset

ChIP HCT-116 GSE72622.HEXIM1.HCT-116 384 bp overlap

HMGXB4 2 datasets

ChIP WTC11 ENCFF962POR 444 bp overlap

ChIP WTC11 ENCFF962POR 412 bp overlap

HNRNPK 2 datasets

ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 244 bp overlap

ChIP Hep-G2 ENCSR519QAA.HNRNPK.Hep-G2 200 bp overlap

ChIP MCF-7_TamR GSE128445.JUN.MCF-7_TamR 400 bp overlap

KDM1A 1 dataset

ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 293 bp overlap

KDM4A 5 datasets

ChIP H1 ENCFF078LED 234 bp overlap

ChIP WA01 ENCSR000AVC.KDM4A.WA01 251 bp overlap

ChIP hiPSC_IA12 GSE106870.KDM4A.hiPSC_IA12 302 bp overlap

ChIP hiPSC_IIA11 GSE106870.KDM4A.hiPSC_IIA11 201 bp overlap

ChIP hiPSC_IID12 GSE106870.KDM4A.hiPSC_IID12 242 bp overlap

KDM6B 1 dataset

ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 182 bp overlap

ChIP GBM1A GSE62211.KLF9.GBM1A 191 bp overlap

KMT2A 1 dataset

ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 381 bp overlap

ChIP THP-1_macrophage_PMA GSE96800.MAF1.THP-1_macrophage_PMA 269 bp overlap

ChIP H1 ENCFF914VQY 321 bp overlap

ChIP WTC11 ENCFF223QFY 486 bp overlap

ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 103 bp overlap

MXI1 3 datasets

ChIP SK-N-SH ENCFF746HVJ 371 bp overlap

ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 147 bp overlap

ChIP neural ENCSR934NHU.MXI1.neural 257 bp overlap

ChIP MOLT-3 GSE59657.MYB.MOLT-3 192 bp overlap

ChIP NB69 GSE138295.MYC.NB69 263 bp overlap

MYCN 10 datasets

ChIP BE2C GSE80151.MYCN.BE2C 339 bp overlap

ChIP COG-N-415 GSE138295.MYCN.COG-N-415 328 bp overlap

ChIP COG-N-415 GSE138295.MYCN.COG-N-415 96 bp overlap

ChIP Kelly GSE94782.MYCN.Kelly 403 bp overlap

ChIP Kelly GSE94822.MYCN.Kelly 432 bp overlap

ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 320 bp overlap

ChIP LA-N-5 GSE138295.MYCN.LA-N-5 265 bp overlap

ChIP LA-N-5 GSE138295.MYCN.LA-N-5 150 bp overlap

ChIP NB-1643 GSE138295.MYCN.NB-1643 548 bp overlap

ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 339 bp overlap

MYOD1 1 dataset

ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 263 bp overlap

NANOG 2 datasets

ChIP WA01 ERP004238.NANOG.WA01 215 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 231 bp overlap

NR2F2 1 dataset

ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 312 bp overlap

NUTM1 1 dataset

ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 505 bp overlap

ChIP HEK293 GSE89017.OGG1.HEK293 287 bp overlap

PCGF1 1 dataset

ChIP WA01 GSE104690.PCGF1.WA01 548 bp overlap

PHF8 2 datasets

ChIP H1 ENCFF427UFV 423 bp overlap

ChIP WA01 ENCSR000ATK.PHF8.WA01 257 bp overlap

POLR2A 3 datasets

ChIP GM23338 ENCFF450WCS 304 bp overlap

ChIP H1 ENCFF833NJP 404 bp overlap

ChIP thyroid gland ENCFF979LRR 283 bp overlap

POU5F1 2 datasets

ChIP SKM-1 GSE93706.POU5F1.SKM-1 173 bp overlap

ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 283 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 548 bp overlap

PRDM14 2 datasets

ChIP NCCIT GSE71675.PRDM14.NCCIT 156 bp overlap

ChIP NCCIT GSE71675.PRDM14.NCCIT 68 bp overlap

RAD21 1 dataset

ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 148 bp overlap

RBBP5 1 dataset

ChIP WA01 ENCSR000AQC.RBBP5.WA01 249 bp overlap

ChIP neural ENCSR000BTV.REST.neural 184 bp overlap

RORC 2 datasets

ChIP HCC70 GSE126380.RORC.HCC70 491 bp overlap

ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 471 bp overlap

ChIP WA01 GSE104690.RYBP.WA01 374 bp overlap

SIN3A 3 datasets

ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 163 bp overlap

ChIP WA01 ENCSR000EBO.SIN3A.WA01 166 bp overlap

ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 260 bp overlap

SMARCA4 3 datasets

ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 277 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 165 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 359 bp overlap

SMARCC1 3 datasets

ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 308 bp overlap

ChIP hiPSC GSE124903.SMARCC1.hiPSC 226 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 373 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 340 bp overlap

ChIP WTC11 ENCFF688PEU 465 bp overlap

SREBP2 2 datasets

ChIP HCC70 GSE126380.SREBP2.HCC70 471 bp overlap

ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 429 bp overlap

STAT3 1 dataset

ChIP WA01 ERP004237.STAT3.WA01 240 bp overlap

SUZ12 2 datasets

ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 548 bp overlap

ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 325 bp overlap

TAF1 5 datasets

ChIP H1 ENCFF478SZO 435 bp overlap

ChIP SK-N-SH ENCFF630ERV 297 bp overlap

ChIP SK-N-SH ENCSR000BQF.TAF1.SK-N-SH 166 bp overlap

ChIP WA01 ENCSR000BHO.TAF1.WA01 275 bp overlap

ChIP WA01 ENCSR000BHO.TAF1.WA01 118 bp overlap

ChIP MOLT-3 GSE59657.TAL1.MOLT-3 191 bp overlap

ChIP H1 ENCFF859IIO 377 bp overlap

ChIP WA01 ENCSR000ECB.TBP.WA01 194 bp overlap

ChIP hESC GSE122298.TBP.hESC 340 bp overlap

ChIP hESC_10h GSE122298.TBP.hESC_10h 205 bp overlap

TEAD1 2 datasets

ChIP H69 GSE62274.TEAD1.H69 192 bp overlap

ChIP WTC11 ENCFF502QUV 295 bp overlap

TFAP2C 2 datasets

ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 257 bp overlap

ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 413 bp overlap

TRIM24 1 dataset

ChIP LNCaP-abl_ETOH GSE69331.TRIM24.LNCaP-abl_ETOH 284 bp overlap

TRIM25 1 dataset

ChIP BT-549 GSE79588.TRIM25.BT-549 321 bp overlap

TRIM28 1 dataset

ChIP HCT-116 GSE72622.TRIM28.HCT-116 209 bp overlap

ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 143 bp overlap

ChIP WTC11 ENCFF139JAW 417 bp overlap

ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 441 bp overlap

ZBTB43 1 dataset

ChIP WTC11 ENCFF058JUB 433 bp overlap

ZBTB7A 1 dataset

ChIP VCaP_CSS GSE123089.ZBTB7A.VCaP_CSS 408 bp overlap

ZFHX2 1 dataset

ChIP HEK293 ENCFF167TUA 50 bp overlap

ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 354 bp overlap

ZNF141 1 dataset

ChIP HEK293T GSE78099.ZNF141.HEK293T 145 bp overlap

ZNF257 1 dataset

Motif DE_24h DE_24h-ZNF257_MA1710.2 10 bp overlap

ZNF263 1 dataset

ChIP K-562 ENCSR000EWN.ZNF263.K-562 126 bp overlap