chr9 : 19,223,736 19,224,341
605 bp 115 TFs 1 linked gene
This 605 bp open chromatin element is linked to DENND4C and is bound by 115 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
DENND4C 6.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:19,218,736 – 19,229,341
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
115 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 202 bp overlap
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 483 bp overlap
ChIP K562 ENCFF938UXQ 196 bp overlap
ATF7 1 dataset
ChIP K-562 ENCSR972ZBV.ATF7.K-562 489 bp overlap
BCL11A 11 datasets
ChIP CD34_Day3_30min GSE104676.BCL11A.CD34_Day3_30min 56 bp overlap
ChIP CD34_Day3_30min GSE104676.BCL11A.CD34_Day3_30min 116 bp overlap
ChIP CD34_Day5_30min GSE104676.BCL11A.CD34_Day5_30min 270 bp overlap
ChIP CD34_Day7_90min GSE104676.BCL11A.CD34_Day7_90min 138 bp overlap
ChIP CD34_Day9_15min GSE104676.BCL11A.CD34_Day9_15min 102 bp overlap
ChIP CD34_Day9_30min GSE104676.BCL11A.CD34_Day9_30min 264 bp overlap
ChIP CD34_Day9_60min GSE104676.BCL11A.CD34_Day9_60min 133 bp overlap
ChIP CD34_Day9_90min GSE104676.BCL11A.CD34_Day9_90min 68 bp overlap
ChIP CD34_Day9_90min GSE104676.BCL11A.CD34_Day9_90min 203 bp overlap
ChIP HUDEP-2_30min GSE104676.BCL11A.HUDEP-2_30min 307 bp overlap
ChIP HUDEP-2_90min GSE104676.BCL11A.HUDEP-2_90min 270 bp overlap
BCOR 1 dataset
ChIP K-562 ENCSR808AKZ.BCOR.K-562 174 bp overlap
BRD2 2 datasets
ChIP K-562 GSE140325.BRD2.K-562 160 bp overlap
ChIP K-562_dilution-6-100 GSE140325.BRD2.K-562_dilution-6-100 129 bp overlap
BRD4 1 dataset
ChIP K-562_iBET-IFNG GSE138084.BRD4.K-562_iBET-IFNG 221 bp overlap
CBFA2T2 2 datasets
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 284 bp overlap
ChIP K562 ENCFF963TXY 381 bp overlap
CBFA2T3 3 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 394 bp overlap
ChIP K-562 GSE142227.CBFA2T3.K-562 248 bp overlap
ChIP K562 ENCFF673OEZ 236 bp overlap
CDK8 2 datasets
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 57 bp overlap
ChIP myometrium_PT848 GSE128230.CDK8.myometrium_PT848 58 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 137 bp overlap
CHD4 1 dataset
ChIP 501-mel GSE134848.CHD4.501-mel 159 bp overlap
CREM 1 dataset
ChIP K-562 ENCSR077DKV.CREM.K-562 193 bp overlap
CTCF 2 datasets
ChIP HUDEP-2_30min GSE104676.CTCF.HUDEP-2_30min 193 bp overlap
ChIP Peyer's patch ENCFF701KWW 351 bp overlap
DPF2 2 datasets
ChIP K-562 ENCSR219BXP.DPF2.K-562 349 bp overlap
ChIP K562 ENCFF775HUO 163 bp overlap
E2F6 2 datasets
ChIP K-562 ENCSR000BLI.E2F6.K-562 131 bp overlap
ChIP K-562 ENCSR000EWJ.E2F6.K-562 179 bp overlap
EGR1 6 datasets
ChIP K-562 ENCSR024CNP.EGR1.K-562 230 bp overlap
ChIP K-562 ENCSR211LTF.EGR1.K-562 291 bp overlap
ChIP K-562 ENCSR000BNE.EGR1.K-562 145 bp overlap
ChIP K562 ENCFF006PJY 245 bp overlap
ChIP K562 ENCFF113OPQ 391 bp overlap
ChIP K562 ENCFF895KGN 283 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 290 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 341 bp overlap
EP300 2 datasets
ChIP K-562 ENCSR000EGE.EP300.K-562 285 bp overlap
ChIP K562 ENCFF226VMS 317 bp overlap
ERG 1 dataset
ChIP VCaP GSE49091.ERG.VCaP 269 bp overlap
ESR1 1 dataset
ChIP endometrioid-adenocarcinoma_tumor_F GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_F 239 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 382 bp overlap
EZH1 2 datasets
ChIP ProEs GSE59087.EZH1.ProEs 139 bp overlap
ChIP ProEs_SHCTR GSE59087.EZH1.ProEs_SHCTR 127 bp overlap
FOXA2 4 datasets
ChIP BJ1-hTERT_MimoRelease GSE92491.FOXA2.BJ1-hTERT_MimoRelease 244 bp overlap
ChIP DE DE-FOXA2-1 468 bp overlap
ChIP DE DE-FOXA2-2 264 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 62 bp overlap
FOXJ2 1 dataset
ChIP K562 ENCFF457GZC 560 bp overlap
GABPA 1 dataset
ChIP VCaP GSE49091.GABPA.VCaP 175 bp overlap
GATA1 15 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 80 bp overlap
ChIP CD34_Day9_30min GSE104676.GATA1.CD34_Day9_30min 180 bp overlap
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 264 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 273 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 336 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 377 bp overlap
ChIP K-562 ENCSR000EFT.GATA1.K-562 139 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 277 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 303 bp overlap
ChIP K562 ENCFF094CMK 251 bp overlap
ChIP erythroblast ENCFF867JAR 418 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 605 bp overlap
ChIP erythroid-progenitor GSE124163.GATA1.erythroid-progenitor 144 bp overlap
ChIP erythroid_Don001 GSE137982.GATA1.erythroid_Don001 361 bp overlap
ChIP erythroid_Don003 GSE137982.GATA1.erythroid_Don003 344 bp overlap
GATA2 5 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 365 bp overlap
Motif DE_36h DE_36h-GATA2_MA0036.4 7 bp overlap
ChIP K-562 ENCSR000DKA.GATA2.K-562 554 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 347 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 166 bp overlap
GATA4 15 datasets
ChIP A-549 GSE85002.GATA4.A-549 234 bp overlap
ChIP DE DE-GATA4-1 605 bp overlap
ChIP DE DE-GATA4-2 581 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
ChIP G296S GSE85628.GATA4.G296S 355 bp overlap
ChIP G296S_2 GSE85628.GATA4.G296S_2 355 bp overlap
ChIP G296S_4 GSE85628.GATA4.G296S_4 469 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 547 bp overlap
ChIP cardiomyocyte GSE85628.GATA4.cardiomyocyte 194 bp overlap
ChIP cardiomyocyte_1 GSE85628.GATA4.cardiomyocyte_1 195 bp overlap
ChIP cardiomyocyte_5 GSE85628.GATA4.cardiomyocyte_5 501 bp overlap
ChIP cardiomyocyte_7 GSE85628.GATA4.cardiomyocyte_7 209 bp overlap
ChIP foregut GSE117136.GATA4.foregut 579 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 605 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 605 bp overlap
GATA5 1 dataset
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
GATA6 19 datasets
ChIP AGS GSE51705.GATA6.AGS 330 bp overlap
ChIP AGS GSE51936.GATA6.AGS 82 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 200 bp overlap
ChIP DE DE-GATA6-1 531 bp overlap
ChIP DE DE-GATA6-2 605 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 508 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 602 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 497 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 570 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 605 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 541 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 270 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 585 bp overlap
ChIP foregut GSE117136.GATA6.foregut 532 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 339 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 601 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 507 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 556 bp overlap
Gata3 1 dataset
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
HDAC1 4 datasets
ChIP K-562 ENCSR711VWL.HDAC1.K-562 193 bp overlap
ChIP K-562 ENCSR387UWP.HDAC1.K-562 360 bp overlap
ChIP K-562_dilution-6-100 GSE140325.HDAC1.K-562_dilution-6-100 162 bp overlap
ChIP K562 ENCFF968WBH 136 bp overlap
HDAC2 3 datasets
ChIP K-562 ENCSR893WSB.HDAC2.K-562 392 bp overlap
ChIP K-562 ENCSR000BMG.HDAC2.K-562 195 bp overlap
ChIP K-562 GSE140325.HDAC2.K-562 92 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR197ALX.HDGF.K-562 241 bp overlap
JUN 1 dataset
ChIP myometrium_PT848 GSE128230.JUN.myometrium_PT848 93 bp overlap
JUND 1 dataset
ChIP K-562 ENCSR000EGN.JUND.K-562 189 bp overlap
KDM1A 2 datasets
ChIP K-562 ENCSR908CMW.KDM1A.K-562 210 bp overlap
ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 183 bp overlap
L3MBTL2 2 datasets
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 556 bp overlap
ChIP K562 ENCFF320EQC 548 bp overlap
LDB1 2 datasets
ChIP HEP GSE52637.LDB1.HEP 326 bp overlap
ChIP K-562 GSE142227.LDB1.K-562 425 bp overlap
MAF 1 dataset
Motif DE_36h DE_36h-MAF_MA1520.2 13 bp overlap
MAFG 1 dataset
ChIP K-562 ENCSR818DQV.MAFG.K-562 260 bp overlap
MAFK 1 dataset
Motif DE_36h DE_36h-MAFK_MA0496.4 10 bp overlap
MAX 2 datasets
ChIP K-562 ENCSR000EFV.MAX.K-562 258 bp overlap
ChIP MDA-MB-468 GSE81381.MAX.MDA-MB-468 160 bp overlap
MAZ 1 dataset
ChIP K-562 ENCSR000EFX.MAZ.K-562 211 bp overlap
MED12 3 datasets
ChIP leiomyoma_PT916 GSE128230.MED12.leiomyoma_PT916 57 bp overlap
ChIP myometrium_PT1063 GSE128230.MED12.myometrium_PT1063 59 bp overlap
ChIP myometrium_PT967 GSE128230.MED12.myometrium_PT967 152 bp overlap
MEIS2 2 datasets
ChIP K-562 ENCSR851BNE.MEIS2.K-562 115 bp overlap
ChIP K562 ENCFF320GSD 82 bp overlap
MGA 3 datasets
ChIP K-562 ENCSR710WLO.MGA.K-562 246 bp overlap
ChIP K562 ENCFF140CEX 481 bp overlap
ChIP K562 ENCFF140CEX 510 bp overlap
MITF 3 datasets
ChIP K-562 ENCSR797SWM.MITF.K-562 317 bp overlap
ChIP K-562 ENCSR000FCB.MITF.K-562 143 bp overlap
ChIP K562 ENCFF731XJJ 377 bp overlap
MNT 2 datasets
ChIP K-562 ENCSR390VGH.MNT.K-562 316 bp overlap
ChIP K562 ENCFF820IGH 561 bp overlap
MTA1 1 dataset
ChIP K-562 ENCSR807BGP.MTA1.K-562 211 bp overlap
MTA2 1 dataset
ChIP K-562 ENCSR411UYA.MTA2.K-562 256 bp overlap
MTA3 2 datasets
ChIP K-562 ENCSR180NCY.MTA3.K-562 362 bp overlap
ChIP K-562 ENCSR914NEI.MTA3.K-562 245 bp overlap
MYBL2 1 dataset
ChIP Hep-G2 ENCSR581KCO.MYBL2.Hep-G2 125 bp overlap
MYC 3 datasets
ChIP K-562 ENCSR000EGJ.MYC.K-562 188 bp overlap
ChIP K-562 ENCSR000EZU.MYC.K-562 198 bp overlap
ChIP K-562 ENCSR000EGS.MYC.K-562 241 bp overlap
MYNN 1 dataset
ChIP K-562 ENCSR737LTZ.MYNN.K-562 134 bp overlap
Mafg 1 dataset
Motif DE_36h DE_36h-Mafg_MA0659.4 12 bp overlap
Mecom 1 dataset
Motif DE_36h DE_36h-Mecom_MA0029.2 11 bp overlap
NBN 1 dataset
ChIP K-562 ENCSR085QEV.NBN.K-562 322 bp overlap
NCOA2 1 dataset
ChIP MCF-7 ERP000901.NCOA2.MCF-7 121 bp overlap
NCOR1 3 datasets
ChIP K-562 ENCSR798ILC.NCOR1.K-562 261 bp overlap
ChIP K-562 ENCSR910JAI.NCOR1.K-562 219 bp overlap
ChIP K562 ENCFF788MPU 421 bp overlap
NEUROD1 1 dataset
ChIP D283-Med GSE92582.NEUROD1.D283-Med 294 bp overlap
NFE2 2 datasets
ChIP ProEs GSE59087.NFE2.ProEs 271 bp overlap
ChIP ProEs GSE59087.NFE2.ProEs 91 bp overlap
NFYA 1 dataset
ChIP K-562 GSE26439.NFYA.K-562 279 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 249 bp overlap
NKX2-5 2 datasets
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 483 bp overlap
ChIP hESC_sc-14033 GSE89457.NKX2-5.hESC_sc-14033 343 bp overlap
NR2F2 1 dataset
ChIP liver ENCSR168SMX.NR2F2.liver 346 bp overlap
NR3C1 1 dataset
ChIP K-562_GLUCC ERP007081.NR3C1.K-562_GLUCC 272 bp overlap
ONECUT2 1 dataset
ChIP PC-3_normoxia GSE106305.ONECUT2.PC-3_normoxia 102 bp overlap
PBX2 1 dataset
ChIP K-562 ENCSR263DFP.PBX2.K-562 444 bp overlap
PDX1 3 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 124 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 104 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 519 bp overlap
PGR 2 datasets
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 504 bp overlap
ChIP myometrium_NP2 GSE137550.PGR.myometrium_NP2 431 bp overlap
PKNOX1 2 datasets
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 61 bp overlap
ChIP K562 ENCFF236IUS 153 bp overlap
POLR2A 3 datasets
ChIP erythroblast ENCFF498VMR 595 bp overlap
ChIP erythroblast ENCFF498VMR 560 bp overlap
ChIP erythroblast ENCFF498VMR 361 bp overlap
RAD51 1 dataset
ChIP K-562 ENCSR524BUE.RAD51.K-562 235 bp overlap
RCOR1 1 dataset
ChIP K562 ENCFF216EEJ 297 bp overlap
RNF2 1 dataset
ChIP K562 ENCFF653BQJ 509 bp overlap
RXR 1 dataset
ChIP macrophage ERP008801.RXR.macrophage 248 bp overlap
Rfx6 1 dataset
Motif DE_36h DE_36h-Rfx6_MA1724.2 9 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 164 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 152 bp overlap
SMAD1 2 datasets
ChIP CD34_ERYTH_BMP GSE29194.SMAD1.CD34_ERYTH_BMP 235 bp overlap
ChIP CD34_PROG_BMP GSE29194.SMAD1.CD34_PROG_BMP 132 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 527 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 360 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 506 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 492 bp overlap
SMARCE1 3 datasets
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 367 bp overlap
ChIP K562 ENCFF690CFF 394 bp overlap
ChIP K562 ENCFF690CFF 517 bp overlap
SOX10 1 dataset
Motif DE_36h DE_36h-SOX10_MA0442.3 6 bp overlap
SOX6 2 datasets
ChIP K-562 ENCSR788RSW.SOX6.K-562 340 bp overlap
ChIP K562 ENCFF059YCJ 437 bp overlap
SP5 1 dataset
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
SPI1 1 dataset
ChIP monocyte_MACROPHAGE GSE31621.SPI1.monocyte_MACROPHAGE 150 bp overlap
STAT1 1 dataset
ChIP SET-2_DMSO GSE100566.STAT1.SET-2_DMSO 205 bp overlap
STAT3 1 dataset
ChIP monocyte_IL10 GSE120943.STAT3.monocyte_IL10 142 bp overlap
Sox11 1 dataset
Motif DE_36h DE_36h-Sox11_MA0869.3 8 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap
TAL1 9 datasets
ChIP CD34 GSE52924.TAL1.CD34 219 bp overlap
ChIP K-562 ENCSR106FRG.TAL1.K-562 232 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 187 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 298 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 338 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 233 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 283 bp overlap
ChIP K562 ENCFF661CCK 277 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 307 bp overlap
TCF3 1 dataset
ChIP K-562 ENCSR970OJY.TCF3.K-562 225 bp overlap
TP63 1 dataset
ChIP foreskin GSE126390.TP63.foreskin 200 bp overlap
TRPS1 1 dataset
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
USF1 2 datasets
ChIP K-562 ENCSR000BKT.USF1.K-562 205 bp overlap
ChIP K562 ENCFF633EZB 265 bp overlap
VDR 1 dataset
ChIP THP-1_EtOH_1d GSE89431.VDR.THP-1_EtOH_1d 156 bp overlap
VEZF1 1 dataset
ChIP K562 ENCFF053XDV 559 bp overlap
ZBTB1 1 dataset
ChIP Jurkat_ZBTB1-KO_Asp-deprivation_cDNA GSE145783.ZBTB1.Jurkat_ZBTB1-KO_Asp-deprivation_cDNA 161 bp overlap
ZBTB2 1 dataset
ChIP K-562 ENCSR230PTV.ZBTB2.K-562 234 bp overlap
ZBTB7A 2 datasets
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 602 bp overlap
ChIP K-562 GSE103445.ZBTB7A.K-562 288 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 282 bp overlap
ZFX 3 datasets
ChIP K-562 ENCSR920ASP.ZFX.K-562 283 bp overlap
ChIP K562 ENCFF169LZT 511 bp overlap
ChIP K562 ENCFF536AJO 575 bp overlap
ZNF18 1 dataset
ChIP K-562 GSE97661.ZNF18.K-562 137 bp overlap
ZNF24 1 dataset
ChIP K-562 ENCSR695EQB.ZNF24.K-562 244 bp overlap
ZNF341 1 dataset
ChIP HEK293 GSE76494.ZNF341.HEK293 223 bp overlap