chr6 : 24,321,394 24,322,032
638 bp 149 TFs 0 linked genes
This 638 bp open chromatin element has no linked target genes and is bound by 149 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:24,316,394 – 24,327,032
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
149 transcription factors
Source
Cell type
ALX3 1 dataset
Motif DE_12h DE_12h-ALX3_MA0634.2 6 bp overlap
ATF6 1 dataset
Motif DE_12h DE_12h-ATF6_MA1466.2 13 bp overlap
BARX2 1 dataset
Motif DE_12h DE_12h-BARX2_MA1471.2 9 bp overlap
BCL11A 2 datasets
ChIP HEK293 ENCFF294OHB 354 bp overlap
ChIP HEK293 ENCSR021DJC.BCL11A.HEK293 320 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 169 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 288 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 234 bp overlap
BRD4 2 datasets
ChIP OVCAR-3_DMSO GSE77568.BRD4.OVCAR-3_DMSO 65 bp overlap
ChIP OVCAR-3_DMSO GSE77568.BRD4.OVCAR-3_DMSO 218 bp overlap
CDX1 1 dataset
Motif DE_12h DE_12h-CDX1_MA0878.3 10 bp overlap
CDX4 1 dataset
Motif DE_12h DE_12h-CDX4_MA1473.2 9 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 200 bp overlap
CREB3L1 1 dataset
Motif DE_12h DE_12h-CREB3L1_MA0839.2 13 bp overlap
CTCF 1 dataset
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 77 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 397 bp overlap
DRGX 1 dataset
Motif DE_12h DE_12h-DRGX_MA1481.2 6 bp overlap
ELF3 1 dataset
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 67 bp overlap
EMX1 1 dataset
Motif DE_12h DE_12h-EMX1_MA0612.3 6 bp overlap
EMX2 1 dataset
Motif DE_12h DE_12h-EMX2_MA0886.2 6 bp overlap
EN1 1 dataset
Motif DE_12h DE_12h-EN1_MA0027.3 6 bp overlap
ESR1 1 dataset
ChIP Ishikawa_E2 GSE109891.ESR1.Ishikawa_E2 121 bp overlap
ESRRA 1 dataset
Motif DE_12h DE_12h-ESRRA_MA0592.4 9 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 394 bp overlap
ETS1 1 dataset
ChIP hESC ENCSR534VHI.ETS1.hESC 168 bp overlap
EVX1 1 dataset
Motif DE_12h DE_12h-EVX1_MA0887.2 6 bp overlap
EVX2 1 dataset
Motif DE_12h DE_12h-EVX2_MA0888.2 6 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 441 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 500 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 197 bp overlap
FLI1 4 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 465 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 394 bp overlap
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 323 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 388 bp overlap
FOXL2 3 datasets
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 291 bp overlap
ChIP HGrC1_C134W-TGF_parental GSE138496.FOXL2.HGrC1_C134W-TGF_parental 160 bp overlap
ChIP KGN_1513 GSE138496.FOXL2.KGN_1513 180 bp overlap
GATA2 2 datasets
ChIP ESF GSE108408.GATA2.ESF 183 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 434 bp overlap
GATA6 5 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 635 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 638 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 638 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 638 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 638 bp overlap
GFI1 1 dataset
ChIP HepG2 ENCFF472INF 255 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 457 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 349 bp overlap
GSX1 1 dataset
Motif DE_12h DE_12h-GSX1_MA0892.2 6 bp overlap
HMGA1 1 dataset
ChIP IMR-90_RAS-induced GSE111841.HMGA1.IMR-90_RAS-induced 67 bp overlap
HOXA1 1 dataset
Motif DE_12h DE_12h-HOXA1_MA1495.2 6 bp overlap
HOXA2 1 dataset
Motif DE_12h DE_12h-HOXA2_MA0900.3 6 bp overlap
HOXB2 1 dataset
Motif DE_12h DE_12h-HOXB2_MA0902.3 6 bp overlap
HOXB3 1 dataset
Motif DE_12h DE_12h-HOXB3_MA0903.2 6 bp overlap
HOXB5 1 dataset
Motif DE_12h DE_12h-HOXB5_MA0904.3 6 bp overlap
HOXB9 1 dataset
Motif DE_12h DE_12h-HOXB9_MA1503.2 9 bp overlap
HOXC10 1 dataset
Motif DE_12h DE_12h-HOXC10_MA0905.2 9 bp overlap
HOXC12 1 dataset
Motif DE_12h DE_12h-HOXC12_MA0906.2 10 bp overlap
HOXC8 1 dataset
Motif DE_12h DE_12h-HOXC8_MA1505.2 6 bp overlap
HOXC9 1 dataset
Motif DE_12h DE_12h-HOXC9_MA0485.3 9 bp overlap
HOXD10 1 dataset
Motif DE_12h DE_12h-HOXD10_MA1506.2 10 bp overlap
HOXD11 1 dataset
Motif DE_12h DE_12h-HOXD11_MA0908.2 9 bp overlap
Hnf1A 1 dataset
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
Hoxa11 1 dataset
Motif DE_12h DE_12h-Hoxa11_MA0911.2 9 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 230 bp overlap
IRF2 1 dataset
Motif DE_12h DE_12h-IRF2_MA0051.2 16 bp overlap
IRF3 1 dataset
Motif DE_12h DE_12h-IRF3_MA1418.2 17 bp overlap
ISX 1 dataset
Motif DE_12h DE_12h-ISX_MA0654.2 6 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 437 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 638 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 401 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 572 bp overlap
KLF10 2 datasets
ChIP HEK293 ENCFF326EGX 436 bp overlap
ChIP HEK293 ENCSR006GAQ.KLF10.HEK293 294 bp overlap
Lef1 1 dataset
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
Lhx4 1 dataset
Motif DE_12h DE_12h-Lhx4_MA0704.2 6 bp overlap
Lhx8 1 dataset
Motif DE_12h DE_12h-Lhx8_MA0705.2 6 bp overlap
MEF2A 1 dataset
Motif DE_12h DE_12h-MEF2A_MA0052.5 10 bp overlap
MEF2C 1 dataset
Motif DE_12h DE_12h-MEF2C_MA0497.2 11 bp overlap
MEIS1 4 datasets
ChIP A-673 GSE109477.MEIS1.A-673 186 bp overlap
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MIXL1 1 dataset
Motif DE_12h DE_12h-MIXL1_MA0662.2 6 bp overlap
MNX1 1 dataset
Motif DE_12h DE_12h-MNX1_MA0707.3 6 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 634 bp overlap
MYB 1 dataset
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 296 bp overlap
Msgn1 1 dataset
Motif DE_12h DE_12h-Msgn1_MA1524.3 10 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 114 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 263 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 638 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 391 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 251 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 638 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 638 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 634 bp overlap
ChIP hESC GSE18292.NANOG.hESC 278 bp overlap
ChIP hESC GSE20650.NANOG.hESC 213 bp overlap
NCAPH2 2 datasets
ChIP RMG-I GSE120058.NCAPH2.RMG-I 358 bp overlap
ChIP RMG-I_ARID1A-KO GSE120058.NCAPH2.RMG-I_ARID1A-KO 140 bp overlap
NIPBL 1 dataset
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 195 bp overlap
NKX2-2 1 dataset
Motif DE_12h DE_12h-NKX2-2_MA1645.2 8 bp overlap
NKX2-5 1 dataset
Motif DE_12h DE_12h-NKX2-5_MA0063.3 7 bp overlap
NKX6-2 1 dataset
Motif DE_12h DE_12h-NKX6-2_MA0675.2 6 bp overlap
NR2F2 1 dataset
ChIP HepG2 ENCFF483TVJ 131 bp overlap
NR3C1 1 dataset
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 373 bp overlap
NR5A1 1 dataset
Motif DE_12h DE_12h-NR5A1_MA1540.3 12 bp overlap
Nr5A2 1 dataset
Motif DE_12h DE_12h-Nr5A2_MA0505.3 9 bp overlap
OSR2 3 datasets
ChIP HEK293 ENCFF875BDB 421 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 467 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 257 bp overlap
PDX1 2 datasets
Motif DE_12h DE_12h-PDX1_MA0132.3 6 bp overlap
ChIP hiPSC GSE125768.PDX1.hiPSC 185 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 75 bp overlap
PHOX2A 1 dataset
Motif DE_12h DE_12h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 1 dataset
Motif DE_12h DE_12h-PHOX2B_MA0681.3 12 bp overlap
POLR2A 2 datasets
ChIP GM23338 ENCFF450WCS 491 bp overlap
ChIP SK-N-MC ENCFF088IVG 491 bp overlap
POU2F3 1 dataset
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
POU3F1 1 dataset
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
POU4F2 1 dataset
Motif DE_12h DE_12h-POU4F2_MA0683.2 15 bp overlap
POU5F1 13 datasets
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 281 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 575 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 523 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 284 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 335 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 351 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 253 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 586 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 528 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 255 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 209 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 313 bp overlap
POU6F1 1 dataset
Motif DE_12h DE_12h-POU6F1_MA0628.2 6 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 175 bp overlap
PRDM14 3 datasets
ChIP hESC GSE22767.PRDM14.hESC 283 bp overlap
ChIP hESC GSE138674.PRDM14.hESC 371 bp overlap
ChIP primordial-germ-cell-like-cell GSE138674.PRDM14.primordial-germ-cell-like-cell 185 bp overlap
PRDM4 2 datasets
ChIP HEK293 ENCFF069PHD 375 bp overlap
ChIP HEK293 ENCSR443MVV.PRDM4.HEK293 371 bp overlap
PRDM6 4 datasets
ChIP HEK293 ENCFF283AJL 539 bp overlap
ChIP HEK293 ENCFF283AJL 539 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 626 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 450 bp overlap
PROP1 1 dataset
Motif DE_12h DE_12h-PROP1_MA0715.1 11 bp overlap
PRRX1 1 dataset
Motif DE_12h DE_12h-PRRX1_MA0716.2 6 bp overlap
RAD21 1 dataset
ChIP HAP1 GSE152721.RAD21.HAP1 316 bp overlap
RARA 2 datasets
Motif DE_12h DE_12h-RARA_MA0730.1 17 bp overlap
ChIP hiPSC_D2 GSE132532.RARA.hiPSC_D2 186 bp overlap
RAX2 1 dataset
Motif DE_12h DE_12h-RAX2_MA0717.2 6 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
REL 1 dataset
Motif DE_12h DE_12h-REL_MA0101.1 10 bp overlap
RNF2 2 datasets
ChIP WA09 GSE105028.RNF2.WA09 417 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 335 bp overlap
RORA 1 dataset
Motif DE_12h DE_12h-RORA_MA0071.1 10 bp overlap
SHOX 1 dataset
Motif DE_12h DE_12h-SHOX_MA0630.2 6 bp overlap
SIX2 4 datasets
ChIP HEK GSE73865.SIX2.HEK 494 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 190 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 163 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 373 bp overlap
SMAD2-3 3 datasets
ChIP HGrC1_EV-TGF GSE138496.SMAD2-3.HGrC1_EV-TGF 180 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 638 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 486 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 456 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 581 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 429 bp overlap
SMARCA4 6 datasets
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 421 bp overlap
ChIP A-549_AG15723 GSE132290.SMARCA4.A-549_AG15723 85 bp overlap
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 57 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 298 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 482 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 441 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 265 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 451 bp overlap
SMARCC1 4 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 495 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 282 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 300 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 348 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 295 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 537 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 623 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 294 bp overlap
STAT3 1 dataset
ChIP HCC1187 GSE152203.STAT3.HCC1187 358 bp overlap
Shox2 1 dataset
Motif DE_12h DE_12h-Shox2_MA0720.2 6 bp overlap
Six3 1 dataset
Motif DE_12h DE_12h-Six3_MA0631.2 11 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 271 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 142 bp overlap
TCF7 1 dataset
Motif DE_12h DE_12h-TCF7_MA0769.3 7 bp overlap
TCF7L1 1 dataset
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 3 datasets
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
ChIP HEK293 ENCSR000EUY.TCF7L2.HEK293 229 bp overlap
TEAD1 1 dataset
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 231 bp overlap
TEAD4 1 dataset
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 166 bp overlap
TLX2 1 dataset
Motif DE_12h DE_12h-TLX2_MA1577.2 6 bp overlap
UNCX 1 dataset
Motif DE_12h DE_12h-UNCX_MA0721.2 6 bp overlap
VAX2 1 dataset
Motif DE_12h DE_12h-VAX2_MA0723.3 6 bp overlap
WT1 2 datasets
ChIP HEK293 ENCFF906HIR 202 bp overlap
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 532 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 257 bp overlap
ZEB2 2 datasets
ChIP HEK293 ENCFF847JIE 454 bp overlap
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 458 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 154 bp overlap
ZNF24 1 dataset
ChIP HEK293 ENCSR984MDV.ZNF24.HEK293 296 bp overlap
ZNF366 3 datasets
ChIP HEK293 ENCFF799ATK 488 bp overlap
ChIP HEK293 ENCFF799ATK 289 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 467 bp overlap
ZNF418 1 dataset
Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap
ZNF558 1 dataset
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap
ZNF629 2 datasets
ChIP HEK293 ENCFF096ELQ 499 bp overlap
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 412 bp overlap
ZNF843 2 datasets
ChIP HEK293 ENCFF241QRH 374 bp overlap
ChIP HEK293 ENCSR502KPJ.ZNF843.HEK293 353 bp overlap
ZNF85 1 dataset
Motif DE_12h DE_12h-ZNF85_MA1720.2 12 bp overlap
ZXDB 2 datasets
ChIP HEK293 ENCFF835SGA 357 bp overlap
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 422 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Zfx 1 dataset
Motif DE_12h DE_12h-Zfx_MA0146.3 10 bp overlap
mix-a 1 dataset
Motif DE_12h DE_12h-mix-a_MA0621.2 7 bp overlap