chr3 : 169,659,802 169,660,214
412 bp 112 TFs 1 linked gene
This 412 bp open chromatin element is linked to MECOM and is bound by 112 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
MECOM 3.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:169,654,802 – 169,665,214
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
112 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP MCF-7 GSE144036.AFF4.MCF-7 209 bp overlap
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 306 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 313 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 290 bp overlap
BCOR 3 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 412 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 162 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 412 bp overlap
BMI1 2 datasets
ChIP K-562 ENCSR782WRO.BMI1.K-562 122 bp overlap
ChIP K-562 ENCSR782WRO.BMI1.K-562 233 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 412 bp overlap
BRD2 1 dataset
ChIP THP-1_iBET-BD1 GSE138084.BRD2.THP-1_iBET-BD1 247 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 156 bp overlap
BRD4 4 datasets
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 226 bp overlap
ChIP HUVEC-C GSE53998.BRD4.HUVEC-C 197 bp overlap
ChIP HUVEC-C_TNF GSE53998.BRD4.HUVEC-C_TNF 412 bp overlap
ChIP HUVEC-C_modETS1 GSE93030.BRD4.HUVEC-C_modETS1 113 bp overlap
CBX2 3 datasets
ChIP HepG2 ENCFF838BNI 97 bp overlap
ChIP K562 ENCFF578AQI 412 bp overlap
ChIP K562 ENCFF578AQI 286 bp overlap
CBX7 2 datasets
ChIP lymphocyte_DMSO GSE110139.CBX7.lymphocyte_DMSO 412 bp overlap
ChIP lymphocyte_UNC4976 GSE110139.CBX7.lymphocyte_UNC4976 144 bp overlap
CBX8 3 datasets
ChIP H1 ENCFF095JHA 404 bp overlap
ChIP K-562 GSE121182.CBX8.K-562 226 bp overlap
ChIP K562 ENCFF485TBL 412 bp overlap
CDKN1B 2 datasets
ChIP MDA-MB-231 GSE112444.CDKN1B.MDA-MB-231 186 bp overlap
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 235 bp overlap
CHD1 3 datasets
ChIP H1 ENCFF998XEK 130 bp overlap
ChIP H1 ENCFF998XEK 169 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 412 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 345 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 236 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 380 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 248 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 338 bp overlap
EHF 2 datasets
Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap
Motif ES_0h ES_0h-EHF_MA0598.4 9 bp overlap
ELF1 2 datasets
Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap
Motif ES_0h ES_0h-ELF1_MA0473.4 9 bp overlap
ELF3 2 datasets
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
Motif ES_0h ES_0h-ELF3_MA0640.3 9 bp overlap
EP300 1 dataset
ChIP tibial nerve ENCFF346AYA 243 bp overlap
ETS1 1 dataset
ChIP HUVEC-C_VEGF_4H GSE41166.ETS1.HUVEC-C_VEGF_4H 279 bp overlap
ETV1 2 datasets
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
Motif ES_0h ES_0h-ETV1_MA0761.3 9 bp overlap
ETV7 2 datasets
Motif DE_12h DE_12h-ETV7_MA1708.2 9 bp overlap
Motif ES_0h ES_0h-ETV7_MA1708.2 9 bp overlap
EZH1 1 dataset
ChIP ProEs_SHEZH2 GSE59087.EZH1.ProEs_SHEZH2 167 bp overlap
EZH2 23 datasets
ChIP DOHH2 ENCFF528GDC 325 bp overlap
ChIP DU145_SH4 GSE135623.EZH2.DU145_SH4 174 bp overlap
ChIP GM12878 ENCSR000ARD.EZH2.GM12878 144 bp overlap
ChIP GM23338 ENCFF613YON 304 bp overlap
ChIP H1 ENCFF232NZA 412 bp overlap
ChIP K-562 ENCSR000AQE.EZH2.K-562 412 bp overlap
ChIP K562 ENCFF494QJK 306 bp overlap
ChIP Karpas-422_CPI360-D4 GSE134136.EZH2.Karpas-422_CPI360-D4 378 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 405 bp overlap
ChIP ProEs_SHCTR GSE59087.EZH2.ProEs_SHCTR 191 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 369 bp overlap
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 412 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 412 bp overlap
ChIP astrocyte ENCFF365JTP 412 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 412 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 412 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 240 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 314 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 132 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 318 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 412 bp overlap
ChIP neural progenitor cell ENCFF018MKA 55 bp overlap
ChIP peripheral-blood-mononuclear-cell_B-cell GSE115772.EZH2.peripheral-blood-mononuclear-cell_B-cell 300 bp overlap
Elf5 2 datasets
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
Motif ES_0h ES_0h-Elf5_MA0136.4 8 bp overlap
Erg 2 datasets
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
Motif ES_0h ES_0h-Erg_MA0474.4 10 bp overlap
FIGLA 1 dataset
Motif ES_0h ES_0h-FIGLA_MA0820.2 6 bp overlap
FOXP1 2 datasets
ChIP H9 GSE31006.FOXP1.H9 60 bp overlap
ChIP SU-DHL-6 ERP010999.FOXP1.SU-DHL-6 97 bp overlap
GABPA 2 datasets
Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap
Motif ES_0h ES_0h-GABPA_MA0062.4 10 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-2 279 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 297 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 285 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 386 bp overlap
GLIS2 2 datasets
ChIP HEK293 ENCFF446EIF 412 bp overlap
ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 385 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 182 bp overlap
HIC1 1 dataset
ChIP HEK293 ENCSR803GYT.HIC1.HEK293 357 bp overlap
HMGB2 1 dataset
ChIP HUVEC-C GSE98245.HMGB2.HUVEC-C 305 bp overlap
IKZF2 2 datasets
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 2 datasets
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
Motif ES_0h ES_0h-Ikzf3_MA1992.2 9 bp overlap
JARID2 3 datasets
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 412 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 366 bp overlap
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 345 bp overlap
JUN 3 datasets
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 291 bp overlap
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 282 bp overlap
ChIP MDA-MB-231 GSE112444.JUN.MDA-MB-231 280 bp overlap
KDM4C 1 dataset
ChIP SW1783 GSE92483.KDM4C.SW1783 157 bp overlap
KMT2A 3 datasets
ChIP HEK293T_C-term GSE90762.KMT2A.HEK293T_C-term 412 bp overlap
ChIP HEK293T_C-term_shCtrl GSE90762.KMT2A.HEK293T_C-term_shCtrl 285 bp overlap
ChIP blood_cord GSE83671.KMT2A.blood_cord 119 bp overlap
MAZ 1 dataset
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 303 bp overlap
MED1 1 dataset
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 332 bp overlap
MEIS1 2 datasets
Motif DE_12h DE_12h-MEIS1_MA1639.2 9 bp overlap
Motif ES_0h ES_0h-MEIS1_MA1639.2 9 bp overlap
MYB 2 datasets
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
Motif ES_0h ES_0h-MYB_MA0100.4 6 bp overlap
MYCN 1 dataset
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 242 bp overlap
NANOG 1 dataset
ChIP WA01 ENCSR000BMT.NANOG.WA01 117 bp overlap
NFATC3 2 datasets
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
Motif ES_0h ES_0h-NFATC3_MA0625.3 6 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney GSE133122.NUTM1.embryonic-kidney 382 bp overlap
Nfat5 2 datasets
Motif DE_12h DE_12h-Nfat5_MA0606.3 8 bp overlap
Motif ES_0h ES_0h-Nfat5_MA0606.3 8 bp overlap
Nfatc1 2 datasets
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Motif ES_0h ES_0h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 2 datasets
Motif DE_12h DE_12h-Nfatc2_MA0152.3 8 bp overlap
Motif ES_0h ES_0h-Nfatc2_MA0152.3 8 bp overlap
OSR2 3 datasets
ChIP HEK293 ENCFF875BDB 203 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 412 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 246 bp overlap
PATZ1 2 datasets
ChIP HEK293 ENCFF016MNJ 308 bp overlap
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 330 bp overlap
PAX6 2 datasets
ChIP retina_pigment GSE60024.PAX6.retina_pigment 148 bp overlap
ChIP retina_pigment GSE60024.PAX6.retina_pigment 132 bp overlap
PBX1 2 datasets
Motif DE_12h DE_12h-PBX1_MA0070.2 9 bp overlap
Motif ES_0h ES_0h-PBX1_MA0070.2 9 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 173 bp overlap
POLR2A 6 datasets
ChIP body of pancreas ENCFF675RCN 401 bp overlap
ChIP endothelial cell of umbilical vein ENCFF303XUJ 372 bp overlap
ChIP endothelial cell of umbilical vein ENCFF467WJF 231 bp overlap
ChIP endothelial cell of umbilical vein ENCFF467WJF 412 bp overlap
ChIP neural cell ENCFF604SPB 196 bp overlap
ChIP upper lobe of left lung ENCFF199JUI 300 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 288 bp overlap
RAD21 1 dataset
ChIP HUVEC-C_hypoxia GSE94872.RAD21.HUVEC-C_hypoxia 368 bp overlap
RBBP5 2 datasets
ChIP WA01 ENCSR000AQC.RBBP5.WA01 135 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 97 bp overlap
RBPJ 1 dataset
Motif ES_0h ES_0h-RBPJ_MA1116.2 6 bp overlap
RELA 2 datasets
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 65 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 163 bp overlap
REST 1 dataset
Motif ES_0h ES_0h-REST_MA0138.3 20 bp overlap
RNF2 7 datasets
ChIP H1 ENCFF239FFS 352 bp overlap
ChIP H1 ENCFF239FFS 189 bp overlap
ChIP HMELBRAF_OVERTUMOR GSE51929.RNF2.HMELBRAF_OVERTUMOR 202 bp overlap
ChIP K562 ENCFF022XJR 259 bp overlap
ChIP K562 ENCFF022XJR 259 bp overlap
ChIP K562 ENCFF653BQJ 412 bp overlap
ChIP NCCIT GSE71675.RNF2.NCCIT 218 bp overlap
Rfx6 2 datasets
Motif DE_12h DE_12h-Rfx6_MA1724.2 9 bp overlap
Motif ES_0h ES_0h-Rfx6_MA1724.2 9 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 301 bp overlap
SCRT1 2 datasets
ChIP HEK293 ENCFF513YVP 178 bp overlap
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 319 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 385 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000BIS.SIN3A.WA01 108 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 412 bp overlap
SMARCB1 2 datasets
ChIP HeLa-S3 ENCSR000EDK.SMARCB1.HeLa-S3 201 bp overlap
ChIP hiPSC GSE124903.SMARCB1.hiPSC 301 bp overlap
SMARCC1 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 412 bp overlap
SMC1 1 dataset
ChIP HAP1_WaplKO-33 GSE94992.SMC1.HAP1_WaplKO-33 218 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 136 bp overlap
ChIP H1 ENCFF263FUH 321 bp overlap
SPI1 1 dataset
ChIP primary-neutrophil_donorE GSE128834.SPI1.primary-neutrophil_donorE 101 bp overlap
SPIB 2 datasets
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
Motif ES_0h ES_0h-SPIB_MA0081.3 13 bp overlap
SS18 3 datasets
ChIP SYO-1 GSE108025.SS18.SYO-1 97 bp overlap
ChIP SYO-1 GSE108025.SS18.SYO-1 148 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 412 bp overlap
SUZ12 6 datasets
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 412 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 57 bp overlap
ChIP K-562 ENCSR412CTM.SUZ12.K-562 217 bp overlap
ChIP Karpas-422_CPI360-D4 GSE134136.SUZ12.Karpas-422_CPI360-D4 410 bp overlap
ChIP NT2/D1 ENCFF574SXS 412 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 332 bp overlap
Spi1 2 datasets
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
Motif ES_0h ES_0h-Spi1_MA0080.7 13 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 222 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 212 bp overlap
TCF4 1 dataset
Motif ES_0h ES_0h-TCF4_MA0830.3 8 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 235 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 352 bp overlap
YY1 2 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 281 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 130 bp overlap
ZBTB20 2 datasets
ChIP HEK293 ENCFF524ADK 412 bp overlap
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 269 bp overlap
ZBTB8A 1 dataset
ChIP HEK293 ENCFF303WRD 136 bp overlap
ZEB1 1 dataset
Motif ES_0h ES_0h-ZEB1_MA0103.4 6 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 397 bp overlap
ZFP36 2 datasets
ChIP GM12878 ENCSR900XDB.ZFP36.GM12878 204 bp overlap
ChIP K562 ENCFF255RZG 140 bp overlap
ZFP37 1 dataset
ChIP HEK293 ENCSR365GRX.ZFP37.HEK293 287 bp overlap
ZNF140 2 datasets
Motif DE_12h DE_12h-ZNF140_MA1589.2 19 bp overlap
Motif ES_0h ES_0h-ZNF140_MA1589.2 19 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 149 bp overlap
ZNF146 2 datasets
ChIP HEK293 ENCFF602LWH 290 bp overlap
ChIP HEK293 ENCSR689YFA.ZNF146.HEK293 300 bp overlap
ZNF175 2 datasets
Motif DE_12h DE_12h-ZNF175_MA2332.1 9 bp overlap
Motif ES_0h ES_0h-ZNF175_MA2332.1 9 bp overlap
ZNF2 1 dataset
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 362 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 209 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 412 bp overlap
ZNF549 2 datasets
Motif ES_0h ES_0h-ZNF549_MA1728.2 8 bp overlap
Motif ES_0h ES_0h-ZNF549_MA1728.2 8 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 214 bp overlap
ZNF680 1 dataset
Motif ES_0h ES_0h-ZNF680_MA1729.2 11 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 158 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 178 bp overlap
Zfp809 1 dataset
Motif ES_0h ES_0h-Zfp809_MA2125.1 9 bp overlap