chr3 : 120,093,362 120,093,496
134 bp 98 TFs 2 linked genes
This 134 bp open chromatin element is linked to GSK3B and GSK3B-DT and is bound by 98 transcription factors.
Linked Genes
2 genes
Distance
Gene Expression Dist. to TSS Distance Link type
GSK3B 169 bp At TSS Proximity
GSK3B-DT 1.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:120,088,362 – 120,098,496
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
98 transcription factors
Source
Cell type
AFF1 2 datasets
ChIP SEM_CX4945 GSE90762.AFF1.SEM_CX4945 134 bp overlap
ChIP SEM_DMSO GSE90762.AFF1.SEM_DMSO 74 bp overlap
AR 1 dataset
ChIP LTAD_EtOH GSE94577.AR.LTAD_EtOH 134 bp overlap
ARID2 4 datasets
ChIP Aska-SS GSE108025.ARID2.Aska-SS 104 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 134 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 134 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-T910M 134 bp overlap
ASH2L 1 dataset
ChIP GM12878 ENCSR849WCQ.ASH2L.GM12878 134 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 126 bp overlap
BCL11B 1 dataset
ChIP thymus_CD34neg GSE84677.BCL11B.thymus_CD34neg 134 bp overlap
BCL3 1 dataset
ChIP A-549 ENCSR000BQH.BCL3.A-549 128 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 125 bp overlap
BCOR 3 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 134 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 134 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 134 bp overlap
BRCA1 1 dataset
ChIP GM12878 ENCFF082DLE 131 bp overlap
BRD1 2 datasets
ChIP HUES-64 GSE104059.BRD1.HUES-64 134 bp overlap
ChIP RKO GSE47190.BRD1.RKO 134 bp overlap
BRD2 3 datasets
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 132 bp overlap
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 77 bp overlap
ChIP SUM149PT_R_DMSO GSE131097.BRD2.SUM149PT_R_DMSO 134 bp overlap
BRD3 2 datasets
ChIP MV4-11_IBET151_500nM GSE120715.BRD3.MV4-11_IBET151_500nM 134 bp overlap
ChIP MV4-11_IBET151_50nM GSE120715.BRD3.MV4-11_IBET151_50nM 99 bp overlap
BRD4 15 datasets
ChIP CLL_patient1 GSE109411.BRD4.CLL_patient1 134 bp overlap
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 120 bp overlap
ChIP HCT-15 GSE73319.BRD4.HCT-15 134 bp overlap
ChIP KOPT-K1 GSE54379.BRD4.KOPT-K1 134 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 129 bp overlap
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 95 bp overlap
ChIP LNCaP-C4-2_F133V_JQ1 GSE88871.BRD4.LNCaP-C4-2_F133V_JQ1 84 bp overlap
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 134 bp overlap
ChIP MDA-MB-231_JQ1-neg_S_3f GSE136151.BRD4.MDA-MB-231_JQ1-neg_S_3f 134 bp overlap
ChIP MPNST_PDJQ GSE62499.BRD4.MPNST_PDJQ 125 bp overlap
ChIP PC-3_GDC-R GSE137207.BRD4.PC-3_GDC-R 134 bp overlap
ChIP PC-3_GDC-R_SAHA GSE137207.BRD4.PC-3_GDC-R_SAHA 134 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 134 bp overlap
ChIP SUM229PE_neg_30nMtrametinib_24h GSE87418.BRD4.SUM229PE_neg_30nMtrametinib_24h 68 bp overlap
ChIP THP-1_DMSO GSE138084.BRD4.THP-1_DMSO 134 bp overlap
CHD1 7 datasets
ChIP A-549 ENCSR398YBM.CHD1.A-549 57 bp overlap
ChIP HeLa-S3 ENCSR392EAA.CHD1.HeLa-S3 134 bp overlap
ChIP K-562 ENCSR000AQD.CHD1.K-562 66 bp overlap
ChIP K562 ENCFF118VJV 134 bp overlap
ChIP MCF-7 ENCFF937PTG 134 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 134 bp overlap
ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 134 bp overlap
CHD4 1 dataset
ChIP pre-B-cell GSE107886.CHD4.pre-B-cell 100 bp overlap
CTCF 1 dataset
ChIP gastrocnemius-medialis ENCSR594NSU.CTCF.gastrocnemius-medialis 134 bp overlap
EHF 1 dataset
ChIP RWPE-1 GSE114241.EHF.RWPE-1 134 bp overlap
ELF1 1 dataset
ChIP K562 ENCFF886KFV 134 bp overlap
ELF3 1 dataset
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 134 bp overlap
ESR1 4 datasets
ChIP MCF-7_4OH-Tam GSE117941.ESR1.MCF-7_4OH-Tam 84 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT GSE123284.ESR1.MCF-7_ARID1A-KO_4-OHT 134 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.ESR1.MCF-7_parental_4-hydroxytamoxifen 127 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 70 bp overlap
ESRRA 2 datasets
ChIP BT-474_EGF GSE81651.ESRRA.BT-474_EGF 74 bp overlap
ChIP BT-474_HRG GSE81651.ESRRA.BT-474_HRG 134 bp overlap
ETS1 4 datasets
ChIP HEY-A8 GSE101832.ETS1.HEY-A8 134 bp overlap
ChIP HUVEC-C_VEGF_4H GSE41166.ETS1.HUVEC-C_VEGF_4H 83 bp overlap
ChIP OVCAR-8 GSE101832.ETS1.OVCAR-8 134 bp overlap
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 87 bp overlap
ETV6 2 datasets
ChIP GM12878 ENCSR626VUC.ETV6.GM12878 134 bp overlap
ChIP GM12878 GSE97661.ETV6.GM12878 105 bp overlap
FOXA1 1 dataset
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 53 bp overlap
GATA3 1 dataset
ChIP A549 ENCFF226FVV 107 bp overlap
HDAC1 3 datasets
ChIP K-562 ENCSR387UWP.HDAC1.K-562 134 bp overlap
ChIP MCF-7_ARID1A-KO GSE123284.HDAC1.MCF-7_ARID1A-KO 134 bp overlap
ChIP NB4 GSE126720.HDAC1.NB4 134 bp overlap
HDAC2 1 dataset
ChIP VCaP_ETOH GSE28950.HDAC2.VCaP_ETOH 134 bp overlap
HNF4A 1 dataset
ChIP GP5D GSE51234.HNF4A.GP5D 134 bp overlap
HNRNPLL 2 datasets
ChIP K-562 ENCSR112RNT.HNRNPLL.K-562 134 bp overlap
ChIP K-562 GSE120104.HNRNPLL.K-562 134 bp overlap
HOXB13 1 dataset
ChIP G-401 GSE65381.HOXB13.G-401 104 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 134 bp overlap
INO80 1 dataset
ChIP Hep-G2 GSE107730.INO80.Hep-G2 134 bp overlap
KDM5B 1 dataset
ChIP SUM185 GSE46055.KDM5B.SUM185 102 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 94 bp overlap
KMT2A 13 datasets
ChIP CCRF-CEM GSE83671.KMT2A.CCRF-CEM 134 bp overlap
ChIP HEK293T_C-term_C49 GSE90762.KMT2A.HEK293T_C-term_C49 125 bp overlap
ChIP HEK293T_C-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_C-term_shCtrl_TASP1-KO 134 bp overlap
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 134 bp overlap
ChIP KOPN-8 GSE83671.KMT2A.KOPN-8 134 bp overlap
ChIP MCF-7_C-term_CX4945 GSE90762.KMT2A.MCF-7_C-term_CX4945 59 bp overlap
ChIP MOLM-13_CBS79-KO-VP-HOTTIP GSE114981.KMT2A.MOLM-13_CBS79-KO-VP-HOTTIP 134 bp overlap
ChIP MOLM-13_DMSO-D3-180110 GSE127507.KMT2A.MOLM-13_DMSO-D3-180110 117 bp overlap
ChIP MV4-11 GSE83671.KMT2A.MV4-11 134 bp overlap
ChIP OCI-AML-3_VTP GSE129636.KMT2A.OCI-AML-3_VTP 76 bp overlap
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 134 bp overlap
ChIP RS4-11 GSE38403.KMT2A.RS4-11 134 bp overlap
ChIP SEM GSE83671.KMT2A.SEM 134 bp overlap
MAX 2 datasets
ChIP P493-6 GSE36354.MAX.P493-6 134 bp overlap
ChIP P493-6_CMYC_1H GSE36354.MAX.P493-6_CMYC_1H 127 bp overlap
MCRS1 3 datasets
ChIP Hep-G2 GSE107730.MCRS1.Hep-G2 134 bp overlap
ChIP Hep-G2 GSE97411.MCRS1.Hep-G2 134 bp overlap
ChIP Huh-7 GSE97411.MCRS1.Huh-7 134 bp overlap
MED 1 dataset
ChIP SEM GSE83671.MED.SEM 134 bp overlap
MED1 7 datasets
ChIP G296S GSE85628.MED1.G296S 70 bp overlap
ChIP G296S_2 GSE85628.MED1.G296S_2 70 bp overlap
ChIP G296S_4 GSE85628.MED1.G296S_4 134 bp overlap
ChIP LS180 GSE39277.MED1.LS180 103 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.MED1.SUM159PT_100nMtrametinib_24h 59 bp overlap
ChIP cardiomyocyte GSE85628.MED1.cardiomyocyte 106 bp overlap
ChIP cardiomyocyte_1 GSE85628.MED1.cardiomyocyte_1 106 bp overlap
MEN1 2 datasets
ChIP PC-3 GSE132827.MEN1.PC-3 74 bp overlap
ChIP RS4-11_DMSO-D3-180110 GSE127507.MEN1.RS4-11_DMSO-D3-180110 134 bp overlap
MLLT1 1 dataset
ChIP K-562 ENCSR107GRP.MLLT1.K-562 134 bp overlap
MTA3 1 dataset
ChIP K-562 ENCSR180NCY.MTA3.K-562 134 bp overlap
MXI1 2 datasets
ChIP GM12878 ENCFF666NJR 134 bp overlap
ChIP IMR-90 ENCSR000EFE.MXI1.IMR-90 134 bp overlap
MYC 1 dataset
ChIP MCF-7 ENCSR000DMQ.MYC.MCF-7 117 bp overlap
MYCN 2 datasets
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 134 bp overlap
ChIP LNCaP_EtOH GSE117304.MYCN.LNCaP_EtOH 134 bp overlap
NBN 1 dataset
ChIP K-562 ENCSR085QEV.NBN.K-562 134 bp overlap
NCOR2 1 dataset
ChIP LS180_125 GSE39277.NCOR2.LS180_125 82 bp overlap
NKRF 1 dataset
ChIP GM12878 ENCFF392NLB 134 bp overlap
NRF1 1 dataset
ChIP HeLa-S3 GSE108856.NRF1.HeLa-S3 106 bp overlap
PAX8 1 dataset
ChIP GM12878 ENCFF033MGF 134 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 134 bp overlap
PDX1 1 dataset
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 79 bp overlap
PHIP 3 datasets
ChIP HCT-116_MLL4-SET-KO_ab834 GSE101646.PHIP.HCT-116_MLL4-SET-KO_ab834 134 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 134 bp overlap
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 134 bp overlap
PLSCR1 1 dataset
ChIP HepG2 ENCFF693TEO 134 bp overlap
POLR2A 1 dataset
ChIP MCF-7 ENCFF164XWP 134 bp overlap
RAD21 13 datasets
ChIP HEK293_siE1A-TAZ GSE130135.RAD21.HEK293_siE1A-TAZ 134 bp overlap
ChIP HEK293_siYAP GSE130135.RAD21.HEK293_siYAP 56 bp overlap
ChIP HeLa-S3_CTCF-s-OE GSE108869.RAD21.HeLa-S3_CTCF-s-OE 134 bp overlap
ChIP IMR-90 ENCSR000EFJ.RAD21.IMR-90 134 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 134 bp overlap
ChIP MCF-7_E2_SHCTCF ERP000209.RAD21.MCF-7_E2_SHCTCF 129 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 114 bp overlap
ChIP SK-N-SH ENCFF747MAS 134 bp overlap
ChIP SLK_CTCF-KD GSE138105.RAD21.SLK_CTCF-KD 134 bp overlap
ChIP SLK_Ctrl GSE138105.RAD21.SLK_Ctrl 134 bp overlap
ChIP lymphoblast_mut GSE155324.RAD21.lymphoblast_mut 134 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 134 bp overlap
ChIP peripheral-blood-neutrophil_PMA-1 GSE126755.RAD21.peripheral-blood-neutrophil_PMA-1 134 bp overlap
RAD51 1 dataset
ChIP GM12878 ENCFF916JXQ 53 bp overlap
RB1 1 dataset
ChIP GM12878 ENCSR785OKZ.RB1.GM12878 131 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 134 bp overlap
RELA 2 datasets
ChIP HDF_NUTLIN GSE77225.RELA.HDF_NUTLIN 74 bp overlap
ChIP aortic-endothelial-cell_IL1B_D8 GSE139377.RELA.aortic-endothelial-cell_IL1B_D8 134 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 122 bp overlap
REST 4 datasets
ChIP CD4 GSE49570.REST.CD4 84 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 52 bp overlap
ChIP colorectal-cancer_CRC121_intact GSE112555.REST.colorectal-cancer_CRC121_intact 109 bp overlap
ChIP neural ENCSR000BTV.REST.neural 134 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 134 bp overlap
SIN3A 7 datasets
ChIP Hep-G2 ENCSR000BGL.SIN3A.Hep-G2 131 bp overlap
ChIP MCF-7 ENCSR000BUM.SIN3A.MCF-7 134 bp overlap
ChIP PANC-1 ENCSR000BOW.SIN3A.PANC-1 81 bp overlap
ChIP SK-N-SH ENCFF931NFD 61 bp overlap
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 128 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 134 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 134 bp overlap
SMARCA4 8 datasets
ChIP 22Rv1_PTEN-KO GSE115615.SMARCA4.22Rv1_PTEN-KO 71 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 134 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 134 bp overlap
ChIP MCF-7 GSE140185.SMARCA4.MCF-7 120 bp overlap
ChIP MCF-7_ARID1A-KO GSE140185.SMARCA4.MCF-7_ARID1A-KO 134 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 134 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 134 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 134 bp overlap
SMARCB1 2 datasets
ChIP Hep-G2 GSE69566.SMARCB1.Hep-G2 134 bp overlap
ChIP hiPSC GSE124903.SMARCB1.hiPSC 134 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 134 bp overlap
SMC3 2 datasets
ChIP GM12878 ENCFF085RLZ 134 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 89 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 72 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 98 bp overlap
SP5 1 dataset
ChIP Hep-G2 ENCSR019NPF.SP5.Hep-G2 91 bp overlap
SPIN1 1 dataset
ChIP T778 GSE57499.SPIN1.T778 58 bp overlap
STAG1 4 datasets
ChIP Hep-G2 ERP000209.STAG1.Hep-G2 134 bp overlap
ChIP MCF-7 ERP000209.STAG1.MCF-7 134 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 117 bp overlap
ChIP MCF-7_E2_SHCTCF ERP000209.STAG1.MCF-7_E2_SHCTCF 134 bp overlap
STAG2 1 dataset
ChIP HCAEC GSE101921.STAG2.HCAEC 113 bp overlap
TAF1 4 datasets
ChIP HeLa-S3 ENCFF556LCN 127 bp overlap
ChIP SK-N-SH ENCSR000BQF.TAF1.SK-N-SH 121 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 117 bp overlap
ChIP neural ENCSR000BTX.TAF1.neural 77 bp overlap
TAF3 1 dataset
ChIP HCT-116 GSE43539.TAF3.HCT-116 134 bp overlap
TBP 1 dataset
ChIP hESC GSE122298.TBP.hESC 129 bp overlap
TBX21 1 dataset
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 56 bp overlap
TBX5 1 dataset
ChIP cardiomyocyte_5 GSE85628.TBX5.cardiomyocyte_5 131 bp overlap
TOP1 2 datasets
ChIP LNCaP GSE63202.TOP1.LNCaP 134 bp overlap
ChIP LNCaP_DHT GSE63202.TOP1.LNCaP_DHT 134 bp overlap
TP53 3 datasets
ChIP IMR-90_APO GSE53491.TP53.IMR-90_APO 134 bp overlap
ChIP IMR-90_SENE GSE53491.TP53.IMR-90_SENE 134 bp overlap
ChIP MCF-7_nutlin GSE86164.TP53.MCF-7_nutlin 134 bp overlap
TP63 3 datasets
ChIP SUIT-2 GSE115461.TP63.SUIT-2 134 bp overlap
ChIP foreskin GSE126390.TP63.foreskin 133 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 101 bp overlap
UBTF 1 dataset
ChIP K-562 ENCSR000EFZ.UBTF.K-562 98 bp overlap
YY1 1 dataset
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 108 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 134 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 134 bp overlap
ChIP HEK293 ENCFF784SLD 134 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 114 bp overlap