chr2 : 88,054,455 – 88,054,647
192 bp 123 TFs 1 linked gene
This 192 bp open chromatin element is linked to KRCC1 and is bound by 123 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
KRCC1 1.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:88,049,455 – 88,059,647
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
123 transcription factors
Source
Cell type
AFF1 3 datasets
ChIP K-562 ENCSR241LIH.AFF1.K-562 192 bp overlap
ChIP K562 ENCFF096RYC 164 bp overlap
ChIP K562 ENCFF096RYC 192 bp overlap
AHR 1 dataset
ChIP MCF-7_TCDD_45min GSE90550.AHR.MCF-7_TCDD_45min 127 bp overlap
ARID1B 1 dataset
ChIP K-562 ENCSR822CCM.ARID1B.K-562 192 bp overlap
ARID2 3 datasets
ChIP Aska-SS_shSSX GSE108025.ARID2.Aska-SS_shSSX 192 bp overlap
ChIP Hep-G2 GSE69566.ARID2.Hep-G2 192 bp overlap
ChIP HepG2 ENCFF317ZHO 192 bp overlap
ATF7 1 dataset
ChIP K-562 ENCSR972ZBV.ATF7.K-562 192 bp overlap
BRD3 1 dataset
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD3.K-562_iBET-BD2-IFNG 174 bp overlap
BRD4 3 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 140 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD4.K-562_DMSO-IFNG 118 bp overlap
ChIP K-562_iBET-BD1 GSE138084.BRD4.K-562_iBET-BD1 192 bp overlap
BRD9 1 dataset
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD9.MDA-MB-231_MGSK2801 70 bp overlap
CAMTA2 1 dataset
ChIP HepG2 ENCFF305ZLM 192 bp overlap
CBFA2T3 1 dataset
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 192 bp overlap
CEBPB 1 dataset
ChIP K-562 ENCSR000BRQ.CEBPB.K-562 125 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 147 bp overlap
CREB1 1 dataset
ChIP K562 ENCFF175LMX 192 bp overlap
CREB3 2 datasets
ChIP K-562 ENCSR093FKD.CREB3.K-562 159 bp overlap
ChIP K562 ENCFF985QJI 124 bp overlap
CTBP1 1 dataset
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 192 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF093OYK 80 bp overlap
ChIP BLaER1 ENCFF896HSY 192 bp overlap
DPF2 1 dataset
ChIP K-562 ENCSR219BXP.DPF2.K-562 192 bp overlap
E4F1 1 dataset
ChIP K-562 ENCSR731LHZ.E4F1.K-562 192 bp overlap
EHF 1 dataset
ChIP RWPE-1 GSE114241.EHF.RWPE-1 192 bp overlap
ELF1 2 datasets
ChIP K-562 ENCSR000BMD.ELF1.K-562 155 bp overlap
ChIP K562 ENCFF886KFV 192 bp overlap
ELF3 3 datasets
ChIP PDAC GSE64557.ELF3.PDAC 192 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 192 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 192 bp overlap
EMSY 1 dataset
ChIP K562 ENCFF511ZZZ 192 bp overlap
ESR1 1 dataset
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 61 bp overlap
FOS 1 dataset
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 111 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_3487 GSE126004.FOXA1.breast-cancer_3487 176 bp overlap
FOXK2 2 datasets
ChIP K-562 ENCSR508DQA.FOXK2.K-562 168 bp overlap
ChIP K562 ENCFF851PFH 192 bp overlap
FOXO1-PAX3 1 dataset
ChIP RH4_Entinostat-6H GSE116344.FOXO1-PAX3.RH4_Entinostat-6H 98 bp overlap
FOXP1 1 dataset
ChIP LNCaP GSE62492.FOXP1.LNCaP 105 bp overlap
GATA1 5 datasets
ChIP K-562 GSE107726.GATA1.K-562 192 bp overlap
ChIP K-562 ENCSR000EFT.GATA1.K-562 180 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 164 bp overlap
ChIP K562 ENCFF094CMK 192 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 159 bp overlap
GATA2 9 datasets
ChIP ESF GSE108408.GATA2.ESF 192 bp overlap
ChIP K-562 ENCSR000DKA.GATA2.K-562 192 bp overlap
ChIP K562 ENCFF544PCK 192 bp overlap
ChIP K562 ENCFF830LLA 192 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 188 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 192 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 189 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P1 192 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P2 192 bp overlap
GATA3 2 datasets
ChIP MCF-7 GSE51274.GATA3.MCF-7 161 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 167 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 192 bp overlap
ChIP DE DE-GATA4-2 192 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 183 bp overlap
ChIP foregut GSE117136.GATA4.foregut 192 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 104 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 192 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 192 bp overlap
HDAC1 3 datasets
ChIP K-562 ENCSR387UWP.HDAC1.K-562 192 bp overlap
ChIP K-562 ENCSR711VWL.HDAC1.K-562 192 bp overlap
ChIP K562 ENCFF928TKZ 192 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR893WSB.HDAC2.K-562 115 bp overlap
HDGF 2 datasets
ChIP K-562 ENCSR563YDA.HDGF.K-562 192 bp overlap
ChIP K-562 ENCSR197ALX.HDGF.K-562 151 bp overlap
HMBOX1 1 dataset
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 175 bp overlap
HMGXB4 2 datasets
ChIP Hep-G2 ENCSR174GOO.HMGXB4.Hep-G2 192 bp overlap
ChIP HepG2 ENCFF179TAD 192 bp overlap
HNF1B 1 dataset
ChIP HepG2 ENCFF928THX 192 bp overlap
IKZF1 3 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 192 bp overlap
ChIP K562 ENCFF348IBL 192 bp overlap
ChIP K562 ENCFF771OHZ 192 bp overlap
IRF4 1 dataset
ChIP T-cell GSE136853.IRF4.T-cell 192 bp overlap
JMJD1C 1 dataset
ChIP HL-60 GSE63484.JMJD1C.HL-60 55 bp overlap
JUNB 1 dataset
ChIP K-562 ENCSR000DJY.JUNB.K-562 108 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 192 bp overlap
KLF6 2 datasets
ChIP Hep-G2 ENCSR757EKM.KLF6.Hep-G2 71 bp overlap
ChIP PDAC GSE64557.KLF6.PDAC 165 bp overlap
KMT2A 5 datasets
ChIP HEK293T_N-term_C49 GSE90762.KMT2A.HEK293T_N-term_C49 53 bp overlap
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 192 bp overlap
ChIP MOLM-13_CBS79-KO-VP-HOTTIP GSE114981.KMT2A.MOLM-13_CBS79-KO-VP-HOTTIP 192 bp overlap
ChIP MV4-11 GSE83671.KMT2A.MV4-11 192 bp overlap
ChIP SEM GSE83671.KMT2A.SEM 146 bp overlap
L3MBTL2 2 datasets
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 192 bp overlap
ChIP K562 ENCFF320EQC 192 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 179 bp overlap
MAFF 5 datasets
ChIP HeLa-S3 ENCFF783SBT 155 bp overlap
ChIP HeLa-S3 ENCSR140DSL.MAFF.HeLa-S3 119 bp overlap
ChIP HepG2 ENCFF452YUT 192 bp overlap
ChIP K-562 ENCSR000EGI.MAFF.K-562 144 bp overlap
ChIP K562 ENCFF071YKK 192 bp overlap
MAFG 2 datasets
ChIP K-562 ENCSR818DQV.MAFG.K-562 192 bp overlap
ChIP K562 ENCFF455EEO 192 bp overlap
MAFK 7 datasets
ChIP A549 ENCFF371EPR 113 bp overlap
ChIP Hep-G2 ENCSR000EDZ.MAFK.Hep-G2 141 bp overlap
ChIP HepG2 ENCFF743ZOF 165 bp overlap
ChIP HepG2 ENCFF767LDG 176 bp overlap
ChIP IMR-90 ENCFF336DHZ 192 bp overlap
ChIP K-562 ENCSR000EGX.MAFK.K-562 74 bp overlap
ChIP K562 ENCFF380WHM 185 bp overlap
MAZ 1 dataset
ChIP K562 ENCFF809XHP 78 bp overlap
MED1 1 dataset
ChIP HepG2 ENCFF495TSS 192 bp overlap
MEN1 2 datasets
ChIP MCF-7 GSE85317.MEN1.MCF-7 192 bp overlap
ChIP PC-3 GSE132827.MEN1.PC-3 51 bp overlap
MLLT1 3 datasets
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 117 bp overlap
ChIP K-562 ENCSR107GRP.MLLT1.K-562 192 bp overlap
ChIP K-562 ENCSR675LRO.MLLT1.K-562 192 bp overlap
MLLT1_FKB 1 dataset
ChIP MV4-11 GSE82116.MLLT1_FKB.MV4-11 192 bp overlap
MTA1 1 dataset
ChIP K-562 ENCSR807BGP.MTA1.K-562 192 bp overlap
MTA2 1 dataset
ChIP K-562 ENCSR411UYA.MTA2.K-562 192 bp overlap
MTA3 2 datasets
ChIP K-562 ENCSR914NEI.MTA3.K-562 139 bp overlap
ChIP K562 ENCFF289UFB 192 bp overlap
MYBL2 2 datasets
ChIP A-673 GSE119971.MYBL2.A-673 130 bp overlap
ChIP Hep-G2 ENCSR581KCO.MYBL2.Hep-G2 81 bp overlap
MYC 1 dataset
ChIP SK-N-AS GSE138295.MYC.SK-N-AS 121 bp overlap
MYCN 1 dataset
ChIP RH4 GSE83726.MYCN.RH4 137 bp overlap
MYOD1 1 dataset
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 192 bp overlap
NBN 1 dataset
ChIP K-562 ENCSR085QEV.NBN.K-562 192 bp overlap
NCOR1 2 datasets
ChIP K562 ENCFF788MPU 88 bp overlap
ChIP K562 ENCFF788MPU 192 bp overlap
NEUROD1 3 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 156 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 192 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 88 bp overlap
NFE2 1 dataset
ChIP K-562 ENCSR000FCC.NFE2.K-562 152 bp overlap
NFE2L2 1 dataset
ChIP K-562 ENCSR485GKE.NFE2L2.K-562 185 bp overlap
NFIC 1 dataset
ChIP HepG2 ENCFF169TKU 192 bp overlap
NR2C2 1 dataset
ChIP K562 ENCFF750AXF 134 bp overlap
NR2F2 1 dataset
ChIP K-562 ENCSR000BRS.NR2F2.K-562 101 bp overlap
NR3C1 1 dataset
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 79 bp overlap
NRF1 1 dataset
ChIP HeLa-S3 GSE108856.NRF1.HeLa-S3 74 bp overlap
PHF8 1 dataset
ChIP Hep-G2 ENCSR604VAE.PHF8.Hep-G2 96 bp overlap
PHIP 3 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 192 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 158 bp overlap
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 192 bp overlap
PKNOX1 1 dataset
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 192 bp overlap
PML 1 dataset
ChIP K-562 ENCSR000BQY.PML.K-562 192 bp overlap
POLR2A 7 datasets
ChIP GM18505 ENCFF311CYB 192 bp overlap
ChIP GM18505 ENCFF311CYB 92 bp overlap
ChIP HepG2 ENCFF252NAR 192 bp overlap
ChIP HepG2 ENCFF252NAR 192 bp overlap
ChIP PFSK-1 ENCFF576NIT 192 bp overlap
ChIP Peyer's patch ENCFF767HVN 192 bp overlap
ChIP vagina ENCFF384GAB 119 bp overlap
POLR2G 4 datasets
ChIP HepG2 ENCFF241AEG 192 bp overlap
ChIP HepG2 ENCFF241AEG 126 bp overlap
ChIP HepG2 ENCFF508UTS 183 bp overlap
ChIP HepG2 ENCFF508UTS 126 bp overlap
POU5F1 1 dataset
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 79 bp overlap
RARA 1 dataset
ChIP HepG2 ENCFF582XUA 192 bp overlap
RARB 1 dataset
ChIP A549 ENCFF837HCQ 79 bp overlap
RBFOX2 7 datasets
ChIP HepG2 ENCFF554DMZ 192 bp overlap
ChIP HepG2 ENCFF554DMZ 192 bp overlap
ChIP HepG2 ENCFF939HTZ 192 bp overlap
ChIP HepG2 ENCFF939HTZ 192 bp overlap
ChIP K-562 GSE120104.RBFOX2.K-562 117 bp overlap
ChIP K562 ENCFF196WTG 153 bp overlap
ChIP K562 ENCFF196WTG 192 bp overlap
RBM22 2 datasets
ChIP HepG2 ENCFF292RVQ 110 bp overlap
ChIP HepG2 ENCFF561IAJ 110 bp overlap
REST 2 datasets
ChIP K-562 ENCSR000BMW.REST.K-562 94 bp overlap
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 72 bp overlap
SMAD5 1 dataset
ChIP K-562 ENCSR000FCD.SMAD5.K-562 159 bp overlap
SMARCA4 6 datasets
ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 192 bp overlap
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 192 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 192 bp overlap
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 187 bp overlap
ChIP K562 ENCFF316MCJ 192 bp overlap
ChIP MCF-7 GSE140185.SMARCA4.MCF-7 192 bp overlap
SMARCB1 1 dataset
ChIP RMG-I_ARID1A-KO GSE120058.SMARCB1.RMG-I_ARID1A-KO 142 bp overlap
SMARCC2 1 dataset
ChIP K-562 ENCSR519WMW.SMARCC2.K-562 68 bp overlap
SMARCD3 1 dataset
ChIP MCF-7 GSE124225.SMARCD3.MCF-7 98 bp overlap
SMARCE1 1 dataset
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 192 bp overlap
SNAPC4 1 dataset
ChIP HepG2 ENCFF536CFY 177 bp overlap
SOX6 2 datasets
ChIP HepG2 ENCFF767OCK 130 bp overlap
ChIP K-562 ENCSR788RSW.SOX6.K-562 192 bp overlap
SPI1 1 dataset
ChIP HL-60 ENCFF645GBT 54 bp overlap
SREBF1 2 datasets
ChIP A-549 ENCSR897MYK.SREBF1.A-549 95 bp overlap
ChIP A549 ENCFF955FQW 174 bp overlap
SSRP1 2 datasets
ChIP HepG2 ENCFF540BLL 165 bp overlap
ChIP hiF-T GSE98758.SSRP1.hiF-T 150 bp overlap
SUPT5H 1 dataset
ChIP HCT-116_DMSO_pSer666 GSE138548.SUPT5H.HCT-116_DMSO_pSer666 192 bp overlap
SUPT6H 1 dataset
ChIP HCT-116 GSE130509.SUPT6H.HCT-116 192 bp overlap
TARDBP 1 dataset
ChIP HepG2 ENCFF356JNC 110 bp overlap
TEAD1 1 dataset
ChIP K-562 ENCSR591ASD.TEAD1.K-562 94 bp overlap
THRA 1 dataset
ChIP HepG2 ENCFF025KMX 160 bp overlap
TRIM28 2 datasets
ChIP K-562 ENCSR000BRW.TRIM28.K-562 148 bp overlap
ChIP K562 ENCFF172UPN 192 bp overlap
TSC22D1 1 dataset
ChIP MCF-7 ENCFF552PAC 134 bp overlap
WT1 1 dataset
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 160 bp overlap
ZBTB24 1 dataset
ChIP HCT-116 GSE111683.ZBTB24.HCT-116 149 bp overlap
ZBTB34 1 dataset
ChIP HepG2 ENCFF161MIO 113 bp overlap
ZBTB38 1 dataset
ChIP HepG2 ENCFF875UQX 81 bp overlap
ZBTB7A 1 dataset
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 127 bp overlap
ZEB2 2 datasets
ChIP K-562 ENCSR004GKA.ZEB2.K-562 192 bp overlap
ChIP K-562 ENCSR322CFO.ZEB2.K-562 192 bp overlap
ZFP91 1 dataset
ChIP K562 ENCFF501CDP 192 bp overlap
ZFX 1 dataset
ChIP K-562 ENCSR920ASP.ZFX.K-562 192 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 188 bp overlap
ZKSCAN8 1 dataset
ChIP HepG2 ENCFF555WYO 192 bp overlap
ZNF181 1 dataset
ChIP HepG2 ENCFF222AKV 117 bp overlap
ZNF20 1 dataset
ChIP HepG2 ENCFF518BKZ 192 bp overlap
ZNF316 1 dataset
ChIP K562 ENCFF838QCD 192 bp overlap
ZNF318 2 datasets
ChIP K-562 ENCSR352BJL.ZNF318.K-562 190 bp overlap
ChIP K562 ENCFF592QGS 192 bp overlap
ZNF366 1 dataset
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 85 bp overlap
ZNF569 1 dataset
ChIP HepG2 ENCFF594IPO 153 bp overlap
ZNF70 1 dataset
ChIP SK-N-SH ENCFF833ACX 134 bp overlap
ZNF800 1 dataset
ChIP HepG2 ENCFF840FYM 192 bp overlap
ZNF83 1 dataset
ChIP K562 ENCFF340RTV 175 bp overlap
ZSCAN5A 1 dataset
ChIP HepG2 ENCFF633DFI 84 bp overlap
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