chr19 : 38,655,243 38,655,613
370 bp 135 TFs 1 linked gene
This 370 bp open chromatin element is linked to ACTN4 and is bound by 135 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
ACTN4 7.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr19:38,650,243 – 38,660,613
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
135 transcription factors
Source
Cell type
AR 1 dataset
ChIP THP-1_R1881 GSE131381.AR.THP-1_R1881 65 bp overlap
ARID1A 2 datasets
ChIP 12Z GSE129781.ARID1A.12Z 322 bp overlap
ChIP RMG-I GSE104545.ARID1A.RMG-I 370 bp overlap
ARID1B 1 dataset
ChIP Hep-G2 GSE69566.ARID1B.Hep-G2 82 bp overlap
ARID3A 1 dataset
ChIP GM12878 ENCFF006WWZ 72 bp overlap
ATF2 1 dataset
ChIP GM12878 ENCFF521LQJ 106 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 115 bp overlap
BRD2 3 datasets
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 115 bp overlap
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 112 bp overlap
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 370 bp overlap
BRD4 9 datasets
ChIP COLO-205 GSE73319.BRD4.COLO-205 233 bp overlap
ChIP HCT-15 GSE73319.BRD4.HCT-15 370 bp overlap
ChIP PC-3_GDC-R_SAHA GSE137207.BRD4.PC-3_GDC-R_SAHA 307 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 188 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 182 bp overlap
ChIP SUM229PE_neg_30nMtrametinib_24h GSE87418.BRD4.SUM229PE_neg_30nMtrametinib_24h 208 bp overlap
ChIP SW480 GSE110473.BRD4.SW480 370 bp overlap
ChIP SW480_16h_TNF-a GSE110473.BRD4.SW480_16h_TNF-a 370 bp overlap
ChIP T-cell_iBET GSE138084.BRD4.T-cell_iBET 160 bp overlap
CBFB 1 dataset
ChIP GM12878 ENCFF056JUS 136 bp overlap
CDK8 1 dataset
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 92 bp overlap
CDX2 1 dataset
ChIP LS180_125 GSE31939.CDX2.LS180_125 131 bp overlap
CEBPA 1 dataset
ChIP MV4-11 GSE88746.CEBPA.MV4-11 165 bp overlap
CHD1 1 dataset
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 134 bp overlap
CREB1 1 dataset
Motif DE_24h DE_24h-CREB1_MA0018.5 8 bp overlap
CREM 1 dataset
ChIP GM12878 ENCFF391UGE 115 bp overlap
CTNNB1 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.CTNNB1.hESC_YAP-_activinA_15h 297 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 370 bp overlap
EED 1 dataset
ChIP GM12878 ENCFF266FYW 166 bp overlap
ELF3 2 datasets
ChIP PDAC GSE64557.ELF3.PDAC 341 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 302 bp overlap
EOMES 2 datasets
Motif DE_24h DE_24h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 298 bp overlap
ERG 1 dataset
ChIP aortic-endothelial-cell_D49 GSE139377.ERG.aortic-endothelial-cell_D49 167 bp overlap
ESR1 4 datasets
ChIP MCF-7_E2-20min-ERalpha GSE94023.ESR1.MCF-7_E2-20min-ERalpha 220 bp overlap
ChIP MCF-7_E2-5min-ERalpha GSE94023.ESR1.MCF-7_E2-5min-ERalpha 220 bp overlap
ChIP MCF-7_Fulv GSE117941.ESR1.MCF-7_Fulv 117 bp overlap
ChIP U2OS_E2 GSE26110.ESR1.U2OS_E2 228 bp overlap
ESR2 2 datasets
ChIP MDA-MB-231_LY500307 GSE108979.ESR2.MDA-MB-231_LY500307 141 bp overlap
ChIP MDA-MB-231_estradiol GSE108979.ESR2.MDA-MB-231_estradiol 187 bp overlap
ETS1 1 dataset
ChIP HUVEC-C_VEGF_4H GSE41166.ETS1.HUVEC-C_VEGF_4H 173 bp overlap
ETV6 2 datasets
ChIP GM12878 ENCFF105ZMI 128 bp overlap
ChIP GM12878 ENCSR626VUC.ETV6.GM12878 77 bp overlap
EZH2 1 dataset
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 94 bp overlap
FOS 2 datasets
ChIP CD4 GSE116695.FOS.CD4 81 bp overlap
Motif DE_24h DE_24h-FOS_MA1951.2 13 bp overlap
FOXA1 2 datasets
ChIP PDAC GSE64557.FOXA1.PDAC 96 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 252 bp overlap
FOXA2 1 dataset
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 85 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 243 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 370 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 370 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 370 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 370 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 370 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 174 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 154 bp overlap
HES6 1 dataset
Motif DE_24h DE_24h-HES6_MA1493.1 10 bp overlap
HIC1 2 datasets
ChIP HEK293 ENCFF252CFL 294 bp overlap
ChIP HEK293 ENCSR803GYT.HIC1.HEK293 242 bp overlap
HNF1B 1 dataset
ChIP PANC-1_HNF1B-OE GSE119930.HNF1B.PANC-1_HNF1B-OE 98 bp overlap
HOXB8 1 dataset
ChIP PANC-1 GSE119930.HOXB8.PANC-1 141 bp overlap
HOXC13 1 dataset
Motif DE_24h DE_24h-HOXC13_MA0907.2 9 bp overlap
Hnf1A 1 dataset
Motif DE_24h DE_24h-Hnf1A_MA1991.2 10 bp overlap
IKZF1 1 dataset
ChIP GM12878 ENCFF753XDO 181 bp overlap
IKZF2 1 dataset
ChIP GM12878 ENCFF238LYK 181 bp overlap
IRF4 3 datasets
ChIP B-cell GSE142493.IRF4.B-cell 77 bp overlap
ChIP GM12878 ENCFF769ZDL 58 bp overlap
ChIP T-cell GSE136853.IRF4.T-cell 142 bp overlap
IRF7 1 dataset
Motif DE_24h DE_24h-IRF7_MA0772.2 13 bp overlap
Irf1 1 dataset
Motif DE_24h DE_24h-Irf1_MA0050.4 11 bp overlap
JUN 7 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 370 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 370 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 360 bp overlap
ChIP HAEC_IL1b_4h GSE89970.JUN.HAEC_IL1b_4h 243 bp overlap
ChIP HAEC_TNFa_4h GSE89970.JUN.HAEC_TNFa_4h 204 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 370 bp overlap
ChIP T-cell GSE136853.JUN.T-cell 225 bp overlap
JUNB 3 datasets
ChIP A549 ENCFF251BPG 264 bp overlap
ChIP GM12878 ENCFF667EJQ 118 bp overlap
ChIP Karpas-299 GSE151413.JUNB.Karpas-299 186 bp overlap
KLF4 1 dataset
ChIP PDAC GSE64557.KLF4.PDAC 309 bp overlap
KMT2A 1 dataset
ChIP blood_cord GSE83671.KMT2A.blood_cord 125 bp overlap
MAF 1 dataset
ChIP CD4_Th1 GSE72266.MAF.CD4_Th1 147 bp overlap
MED1 3 datasets
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 226 bp overlap
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 183 bp overlap
ChIP U-87MG GSE36354.MED1.U-87MG 128 bp overlap
MED12 1 dataset
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 76 bp overlap
MGA 1 dataset
Motif DE_24h DE_24h-MGA_MA0801.1 8 bp overlap
MTA3 2 datasets
ChIP GM12878 ENCFF681QPL 202 bp overlap
ChIP GM12878 ENCSR000BRH.MTA3.GM12878 83 bp overlap
MXI1 2 datasets
ChIP IMR-90 ENCFF040YVH 185 bp overlap
ChIP IMR-90 ENCSR000EFE.MXI1.IMR-90 98 bp overlap
MYB 3 datasets
ChIP CD4_TH2 GSE72266.MYB.CD4_TH2 64 bp overlap
ChIP CD4_Th1 GSE72266.MYB.CD4_Th1 71 bp overlap
ChIP DU528 GSE94000.MYB.DU528 314 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 370 bp overlap
MZF1 1 dataset
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 110 bp overlap
NANOG 2 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 370 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 198 bp overlap
NCAPH2 2 datasets
ChIP RMG-I GSE120058.NCAPH2.RMG-I 150 bp overlap
ChIP RMG-I GSE120058.NCAPH2.RMG-I 104 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 61 bp overlap
NEUROG2 3 datasets
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 144 bp overlap
ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 170 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 175 bp overlap
NFATC1 1 dataset
ChIP GM12878 ENCFF023CAZ 185 bp overlap
NFATC2 1 dataset
ChIP CD4_fly-DNA GSE116695.NFATC2.CD4_fly-DNA 363 bp overlap
NFIA 1 dataset
Motif DE_24h DE_24h-NFIA_MA0670.2 6 bp overlap
NFIC 1 dataset
ChIP GM12878 ENCSR000BRN.NFIC.GM12878 99 bp overlap
NFIX 1 dataset
Motif DE_24h DE_24h-NFIX_MA0671.2 6 bp overlap
NR2E3 1 dataset
ChIP A549 ENCFF833WDR 265 bp overlap
NR3C1 1 dataset
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 276 bp overlap
NUTM1 1 dataset
ChIP NUT_DMSO GSE133122.NUTM1.NUT_DMSO 158 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 160 bp overlap
PHIP 2 datasets
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 370 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 239 bp overlap
POLR2A 7 datasets
ChIP H1 ENCFF566JSR 370 bp overlap
ChIP H1 ENCFF833NJP 240 bp overlap
ChIP SK-N-SH ENCFF683PFH 211 bp overlap
ChIP esophagus muscularis mucosa ENCFF791ZXN 266 bp overlap
ChIP gastrocnemius medialis ENCFF145VIB 149 bp overlap
ChIP sigmoid colon ENCFF754JQR 195 bp overlap
ChIP transverse colon ENCFF610RWV 228 bp overlap
POLR2G 1 dataset
ChIP HepG2 ENCFF508UTS 370 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 263 bp overlap
PRDM1 3 datasets
ChIP A549 ENCFF012KDW 249 bp overlap
Motif DE_24h DE_24h-PRDM1_MA0508.4 7 bp overlap
ChIP HEK293 ENCFF302TBP 211 bp overlap
PRDM14 1 dataset
ChIP hESC GSE138674.PRDM14.hESC 161 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 286 bp overlap
PROX1 1 dataset
ChIP SW480 GSE60390.PROX1.SW480 294 bp overlap
RARB 1 dataset
ChIP A549 ENCFF837HCQ 192 bp overlap
RBFOX2 2 datasets
ChIP HepG2 ENCFF554DMZ 162 bp overlap
ChIP HepG2 ENCFF939HTZ 162 bp overlap
RBPJ 1 dataset
ChIP LCL GSE75503.RBPJ.LCL 81 bp overlap
RELA 9 datasets
ChIP HUVEC-C_TNF-30min GSE121890.RELA.HUVEC-C_TNF-30min 122 bp overlap
ChIP HUVEC-C_TNF_30M GSE34500.RELA.HUVEC-C_TNF_30M 122 bp overlap
ChIP SW480_16h_TNFa GSE102796.RELA.SW480_16h_TNFa 370 bp overlap
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 370 bp overlap
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 167 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 370 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 218 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 83 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 184 bp overlap
REST 1 dataset
Motif DE_24h DE_24h-REST_MA0138.3 20 bp overlap
SIN3A 3 datasets
ChIP A-549 ENCSR513XQX.SIN3A.A-549 246 bp overlap
ChIP SK-N-SH ENCFF931NFD 177 bp overlap
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 95 bp overlap
SIX1 1 dataset
Motif DE_24h DE_24h-SIX1_MA1118.2 9 bp overlap
SIX2 1 dataset
Motif DE_24h DE_24h-SIX2_MA1119.2 11 bp overlap
SIX5 1 dataset
ChIP A-549 ENCSR000BRL.SIX5.A-549 109 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 350 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 333 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 257 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 354 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 328 bp overlap
SMAD3 1 dataset
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 79 bp overlap
SMARCA4 1 dataset
ChIP CTV-1_DSG_SPI1-mut GSE128835.SMARCA4.CTV-1_DSG_SPI1-mut 129 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 370 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 370 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 370 bp overlap
SNAI2 1 dataset
ChIP RD GSE137168.SNAI2.RD 219 bp overlap
SOX10 1 dataset
Motif DE_24h DE_24h-SOX10_MA0442.3 6 bp overlap
SOX4 1 dataset
Motif DE_24h DE_24h-SOX4_MA0867.3 8 bp overlap
SPDEF 1 dataset
ChIP A-549 GSE86957.SPDEF.A-549 187 bp overlap
SPIC 1 dataset
Motif DE_24h DE_24h-SPIC_MA0687.2 13 bp overlap
STAT5B 3 datasets
ChIP CD8_H9 GSE64713.STAT5B.CD8_H9 156 bp overlap
ChIP CD8_H9RET GSE64713.STAT5B.CD8_H9RET 69 bp overlap
ChIP CD8_IL2 GSE64713.STAT5B.CD8_IL2 200 bp overlap
SUPT5H 2 datasets
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 333 bp overlap
ChIP DLD-1_NELFCD-AID_treated GSE144786.SUPT5H.DLD-1_NELFCD-AID_treated 370 bp overlap
SUPT6H 1 dataset
ChIP HCT-116 GSE130509.SUPT6H.HCT-116 88 bp overlap
Six4 1 dataset
Motif DE_24h DE_24h-Six4_MA2001.2 7 bp overlap
Sox5 1 dataset
Motif DE_24h DE_24h-Sox5_MA0087.3 8 bp overlap
Spi1 1 dataset
Motif DE_24h DE_24h-Spi1_MA0080.7 13 bp overlap
Stat2 1 dataset
Motif DE_24h DE_24h-Stat2_MA1623.2 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
TBR1 1 dataset
Motif DE_24h DE_24h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_24h DE_24h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_24h DE_24h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif DE_24h DE_24h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_24h DE_24h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_24h DE_24h-TBX20_MA0689.1 11 bp overlap
TBX21 2 datasets
ChIP CD4_Th1 GSE62482.TBX21.CD4_Th1 83 bp overlap
Motif DE_24h DE_24h-TBX21_MA0690.3 10 bp overlap
TBX3 1 dataset
Motif DE_24h DE_24h-TBX3_MA1566.3 9 bp overlap
TBX4 1 dataset
Motif DE_24h DE_24h-TBX4_MA0806.1 8 bp overlap
TBX5 2 datasets
Motif DE_24h DE_24h-TBX5_MA0807.1 8 bp overlap
ChIP cardiomyocyte_7 GSE85628.TBX5.cardiomyocyte_7 195 bp overlap
TCF3 1 dataset
ChIP GM12878 ENCSR000BQT.TCF3.GM12878 82 bp overlap
TCF7 1 dataset
ChIP GM12878 ENCSR501DKS.TCF7.GM12878 111 bp overlap
TCF7L1 1 dataset
Motif DE_24h DE_24h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 8 datasets
Motif DE_24h DE_24h-TCF7L2_MA0523.2 9 bp overlap
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 265 bp overlap
ChIP HCT-116_C16 GSE127960.TCF7L2.HCT-116_C16 244 bp overlap
ChIP HCT116 ENCFF038POZ 352 bp overlap
ChIP LNCaP GSE51621.TCF7L2.LNCaP 240 bp overlap
ChIP PANC-1 ENCSR000EXL.TCF7L2.PANC-1 370 bp overlap
ChIP Panc1 ENCFF829HHL 370 bp overlap
ChIP Panc1 ENCFF829HHL 370 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 235 bp overlap
TP53 1 dataset
ChIP SW480_shp53_16h_TNF-a GSE115985.TP53.SW480_shp53_16h_TNF-a 272 bp overlap
Tbx6 1 dataset
Motif DE_24h DE_24h-Tbx6_MA1567.3 9 bp overlap
YY1 2 datasets
ChIP GM12891 ENCFF460SIS 213 bp overlap
ChIP GM12892 ENCSR000BLT.YY1.GM12892 93 bp overlap
ZBED1 2 datasets
ChIP GM12878 ENCFF007OSW 169 bp overlap
ChIP GM12878 ENCSR207PFI.ZBED1.GM12878 89 bp overlap
ZNF10 1 dataset
ChIP HEK293 ENCSR019WUS.ZNF10.HEK293 197 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 101 bp overlap