chr9 : 86,942,576 86,943,373
797 bp 109 TFs 2 linked genes
This 797 bp open chromatin element is linked to GAS1 and GAS1RR and is bound by 109 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
GAS1 4.1 kb Proximal Proximity
GAS1RR 5.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:86,937,576 – 86,948,373
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
109 transcription factors
Source
Cell type
AR 5 datasets
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 163 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 273 bp overlap
ChIP VCaP_shERG GSE110655.AR.VCaP_shERG 204 bp overlap
ChIP breast-cancer_ENOB-2854 GSE128018.AR.breast-cancer_ENOB-2854 98 bp overlap
ChIP prostate_1636_T GSE130408.AR.prostate_1636_T 96 bp overlap
BCOR 1 dataset
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 295 bp overlap
BMI1 1 dataset
ChIP MCF-7 ENCSR966YYJ.BMI1.MCF-7 232 bp overlap
BRD4 3 datasets
ChIP HEK293T GSE39579.BRD4.HEK293T 137 bp overlap
ChIP HeLa GSE151038.BRD4.HeLa 356 bp overlap
ChIP RH4 GSE83726.BRD4.RH4 88 bp overlap
CBX8 1 dataset
ChIP A-549 ENCSR616MOB.CBX8.A-549 797 bp overlap
CDK2 1 dataset
ChIP T-47D_PROGESTIN_5M GSE53855.CDK2.T-47D_PROGESTIN_5M 167 bp overlap
CDK8 1 dataset
ChIP myometrium_PT916 GSE128230.CDK8.myometrium_PT916 53 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 211 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 250 bp overlap
CTCF 1 dataset
ChIP HUDEP-2_30min GSE104676.CTCF.HUDEP-2_30min 77 bp overlap
ELF1 1 dataset
ChIP SK-N-SH ENCSR000BTA.ELF1.SK-N-SH 148 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 650 bp overlap
ERG 1 dataset
ChIP VCaP GSE49091.ERG.VCaP 150 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 168 bp overlap
EZH2 5 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 330 bp overlap
ChIP A-1847 GSE95643.EZH2.A-1847 261 bp overlap
ChIP DU145_SH4 GSE135623.EZH2.DU145_SH4 360 bp overlap
ChIP keratinocyte ENCFF070STK 175 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 291 bp overlap
FEZF1 2 datasets
ChIP HEK293 ENCFF528YED 110 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 723 bp overlap
FOS 1 dataset
ChIP myometrium_PT967 GSE128230.FOS.myometrium_PT967 87 bp overlap
FOSL1 1 dataset
ChIP BT-549 GSE46166.FOSL1.BT-549 85 bp overlap
FOXA1 24 datasets
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 137 bp overlap
ChIP LNCaP_DHT24H GSE58428.FOXA1.LNCaP_DHT24H 78 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 57 bp overlap
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 342 bp overlap
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 111 bp overlap
ChIP VCaP_ETOH24H GSE58428.FOXA1.VCaP_ETOH24H 234 bp overlap
ChIP breast-cancer_ENOB-2848 GSE128018.FOXA1.breast-cancer_ENOB-2848 316 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 172 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 232 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 226 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 60 bp overlap
ChIP primary-prostate-cancer_G2_DSG GSE114737.FOXA1.primary-prostate-cancer_G2_DSG 127 bp overlap
ChIP primary-prostate-cancer_P1_DSG GSE114737.FOXA1.primary-prostate-cancer_P1_DSG 408 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 417 bp overlap
ChIP prostate_2030_T GSE130408.FOXA1.prostate_2030_T 193 bp overlap
ChIP prostate_2480 GSE130408.FOXA1.prostate_2480 313 bp overlap
ChIP prostate_2484 GSE130408.FOXA1.prostate_2484 155 bp overlap
ChIP prostate_P19 GSE130408.FOXA1.prostate_P19 194 bp overlap
ChIP prostate_P19_T GSE130408.FOXA1.prostate_P19_T 241 bp overlap
ChIP prostate_P1_T GSE130408.FOXA1.prostate_P1_T 224 bp overlap
ChIP prostate_P23_T GSE130408.FOXA1.prostate_P23_T 341 bp overlap
ChIP prostate_P27_T GSE130408.FOXA1.prostate_P27_T 319 bp overlap
ChIP prostate_P5_T GSE130408.FOXA1.prostate_P5_T 445 bp overlap
ChIP prostate_P7_T GSE130408.FOXA1.prostate_P7_T 389 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 781 bp overlap
ChIP DE DE-FOXA2-2 677 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 305 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 564 bp overlap
ChIP DE DE-GATA4-2 549 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 311 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 237 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 544 bp overlap
ChIP DE DE-GATA6-2 672 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 350 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 435 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 470 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 786 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 470 bp overlap
ChIP foregut GSE117136.GATA6.foregut 110 bp overlap
GFI1 1 dataset
ChIP HepG2 ENCFF472INF 57 bp overlap
GFI1B 1 dataset
ChIP HEK293 ENCSR445PDR.GFI1B.HEK293 267 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 417 bp overlap
HOXB13 17 datasets
ChIP LNCaP GSE56288.HOXB13.LNCaP 343 bp overlap
ChIP prostate_2030_T GSE130408.HOXB13.prostate_2030_T 208 bp overlap
ChIP prostate_2483 GSE130408.HOXB13.prostate_2483 261 bp overlap
ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 234 bp overlap
ChIP prostate_2484_T GSE130408.HOXB13.prostate_2484_T 158 bp overlap
ChIP prostate_P13 GSE130408.HOXB13.prostate_P13 273 bp overlap
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 339 bp overlap
ChIP prostate_P19 GSE130408.HOXB13.prostate_P19 447 bp overlap
ChIP prostate_P19_T GSE130408.HOXB13.prostate_P19_T 216 bp overlap
ChIP prostate_P1_T GSE130408.HOXB13.prostate_P1_T 237 bp overlap
ChIP prostate_P23_T GSE130408.HOXB13.prostate_P23_T 156 bp overlap
ChIP prostate_P25 GSE130408.HOXB13.prostate_P25 434 bp overlap
ChIP prostate_P27 GSE130408.HOXB13.prostate_P27 440 bp overlap
ChIP prostate_P27_T GSE130408.HOXB13.prostate_P27_T 401 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 386 bp overlap
ChIP prostate_P5_T GSE130408.HOXB13.prostate_P5_T 294 bp overlap
ChIP prostate_P7_T GSE130408.HOXB13.prostate_P7_T 516 bp overlap
INSM2 1 dataset
ChIP HEK293 ENCSR382GSF.INSM2.HEK293 115 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 425 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 300 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 510 bp overlap
JUND 1 dataset
ChIP SK-N-SH ENCSR000BSK.JUND.SK-N-SH 249 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 160 bp overlap
KLF10 1 dataset
ChIP HEK293 ENCSR006GAQ.KLF10.HEK293 487 bp overlap
KLF5 1 dataset
ChIP HEK293_E419Q GSE88976.KLF5.HEK293_E419Q 316 bp overlap
L3MBTL2 1 dataset
ChIP HEK293T ENCFF482NJV 397 bp overlap
MAZ 2 datasets
ChIP HEK293 ENCFF994GSG 362 bp overlap
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 181 bp overlap
MED1 5 datasets
ChIP RH4 GSE83726.MED1.RH4 81 bp overlap
ChIP SGBS_TNF GSE64233.MED1.SGBS_TNF 161 bp overlap
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 324 bp overlap
ChIP hMSC-TERT4_adipocyte-D3 GSE113253.MED1.hMSC-TERT4_adipocyte-D3 180 bp overlap
ChIP hMSC-TERT4_adipocyte-D3 GSE113253.MED1.hMSC-TERT4_adipocyte-D3 389 bp overlap
MED12 2 datasets
ChIP leiomyoma_PT967 GSE128230.MED12.leiomyoma_PT967 87 bp overlap
ChIP myometrium_PT916 GSE128230.MED12.myometrium_PT916 81 bp overlap
MTF2 2 datasets
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 248 bp overlap
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 261 bp overlap
MYBL2 1 dataset
ChIP HepG2 ENCFF176QIX 86 bp overlap
MYC 1 dataset
ChIP GP5D_SIRAD21 GSE51234.MYC.GP5D_SIRAD21 345 bp overlap
MYCN 1 dataset
ChIP LNCaP_DHT GSE117304.MYCN.LNCaP_DHT 298 bp overlap
MYNN 2 datasets
ChIP HEK293 ENCFF897QZG 82 bp overlap
ChIP HEK293 ENCSR707BNG.MYNN.HEK293 95 bp overlap
MYOD1 2 datasets
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 244 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 109 bp overlap
MZF1 1 dataset
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 250 bp overlap
NANOG 7 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 158 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 797 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 765 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 526 bp overlap
ChIP hESC GSE18292.NANOG.hESC 114 bp overlap
ChIP hESC GSE20650.NANOG.hESC 313 bp overlap
NR3C1 1 dataset
ChIP BEAS-2B_DEX_IA1 GSE125623.NR3C1.BEAS-2B_DEX_IA1 250 bp overlap
OSR2 1 dataset
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 425 bp overlap
PATZ1 1 dataset
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 210 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 610 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 79 bp overlap
PKNOX1 2 datasets
ChIP HEK293T ENCFF174WDB 107 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 316 bp overlap
POLR2A 2 datasets
ChIP SK-N-SH ENCFF683PFH 650 bp overlap
ChIP prostate gland ENCFF881OMH 154 bp overlap
POU5F1 4 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 761 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 672 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 291 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 563 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 208 bp overlap
PRDM4 1 dataset
ChIP HEK293 ENCSR443MVV.PRDM4.HEK293 312 bp overlap
PRDM6 2 datasets
ChIP HEK293 ENCFF283AJL 311 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 213 bp overlap
RAD21 1 dataset
ChIP HEK293_siCtrl GSE130135.RAD21.HEK293_siCtrl 205 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 508 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 766 bp overlap
RARB 1 dataset
ChIP SK-N-SH ENCFF475WOR 305 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 293 bp overlap
RELA 1 dataset
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 176 bp overlap
RNF2 4 datasets
ChIP A-549 ENCSR798EGJ.RNF2.A-549 797 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 337 bp overlap
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 249 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.RNF2.SYO-1_shRING1A-B 112 bp overlap
RPA2_phospho 2 datasets
ChIP HeLa GSE108172.RPA2_phospho.HeLa 303 bp overlap
ChIP HeLa_shTOP1 GSE108172.RPA2_phospho.HeLa_shTOP1 225 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 95 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 266 bp overlap
SIN3A 2 datasets
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 272 bp overlap
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 459 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 450 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 793 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 700 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 587 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 698 bp overlap
SMARCA4 8 datasets
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 222 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 210 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 106 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 551 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 205 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 317 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 651 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 385 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 246 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 327 bp overlap
SMARCC1 10 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 606 bp overlap
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 591 bp overlap
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 71 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 510 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 147 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 179 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 66 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 797 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 231 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 178 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 234 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 539 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 459 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 404 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 154 bp overlap
SPI1 1 dataset
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 110 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 184 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 273 bp overlap
TAF1 1 dataset
ChIP SK-N-SH ENCSR000BQF.TAF1.SK-N-SH 166 bp overlap
TCF7L2 2 datasets
ChIP HEK293 ENCSR000EUY.TCF7L2.HEK293 88 bp overlap
ChIP HepG2 ENCFF125ABE 71 bp overlap
TEAD1 1 dataset
ChIP adipocyte GSE140782.TEAD1.adipocyte 492 bp overlap
TRIM28 2 datasets
ChIP HEK293 ENCFF265CEM 92 bp overlap
ChIP HEK293 ENCFF582MWI 506 bp overlap
WT1 3 datasets
ChIP HEK293 ENCFF906HIR 90 bp overlap
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 277 bp overlap
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 217 bp overlap
YY1 1 dataset
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 210 bp overlap
ZBTB20 1 dataset
ChIP HEK293 ENCFF524ADK 447 bp overlap
ZBTB33 1 dataset
ChIP SK-N-SH ENCFF667JYU 101 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 102 bp overlap
ZNF18 1 dataset
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 274 bp overlap
ZNF184 2 datasets
ChIP HEK293 ENCFF221CII 357 bp overlap
ChIP HEK293 ENCSR020UPN.ZNF184.HEK293 229 bp overlap
ZNF2 1 dataset
ChIP HEK293 ENCFF641ICT 308 bp overlap
ZNF24 1 dataset
ChIP HEK293 ENCSR984MDV.ZNF24.HEK293 135 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 566 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 228 bp overlap
ZNF496 1 dataset
ChIP HEK293T GSE78099.ZNF496.HEK293T 96 bp overlap
ZNF518A 1 dataset
ChIP HEK293 ENCFF892ULS 182 bp overlap
ZSCAN16 1 dataset
ChIP HEK293 GSE76494.ZSCAN16.HEK293 223 bp overlap
ZSCAN5C 2 datasets
ChIP HEK293 ENCFF343DTU 357 bp overlap
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 555 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 226 bp overlap