chr9 : 16,869,468 – 16,869,841

373 bp 122 TFs 1 linked gene

This 373 bp open chromatin element is linked to BNC2 and is bound by 122 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
BNC2		1.8 kb	Proximal	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

122 transcription factors

AR 2 datasets

ChIP 22Rv1_pLKO GSE109748.AR.22Rv1_pLKO 126 bp overlap

ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 127 bp overlap

ARNT 1 dataset

ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 299 bp overlap

ASH2L 2 datasets

ChIP H1 ENCFF399KAM 163 bp overlap

ASXL1 1 dataset

ChIP HEK293T GSE51673.ASXL1.HEK293T 192 bp overlap

Ahr::Arnt 1 dataset

Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap

BARX1 1 dataset

Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap

BCOR 1 dataset

ChIP WA01 GSE104690.BCOR.WA01 230 bp overlap

BRD1 1 dataset

ChIP HUES-64 GSE104059.BRD1.HUES-64 373 bp overlap

BRD2 2 datasets

ChIP MV4-11_IBET151_50nM GSE120715.BRD2.MV4-11_IBET151_50nM 174 bp overlap

ChIP THP-1_iBET GSE138084.BRD2.THP-1_iBET 130 bp overlap

BRD3 1 dataset

ChIP MV4-11_IBET151_50nM GSE120715.BRD3.MV4-11_IBET151_50nM 139 bp overlap

BRD4 3 datasets

ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 172 bp overlap

ChIP MPNST_PDJQ GSE62499.BRD4.MPNST_PDJQ 297 bp overlap

ChIP SW480 GSE110473.BRD4.SW480 272 bp overlap

BSX 1 dataset

Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap

CDK8 2 datasets

ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 98 bp overlap

ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 69 bp overlap

CHD1 1 dataset

ChIP IMR-90 ENCFF921SVK 258 bp overlap

CHD4 1 dataset

ChIP SCMC GSE155861.CHD4.SCMC 211 bp overlap

CTBP2 1 dataset

ChIP WA01 ENCSR000EUO.CTBP2.WA01 220 bp overlap

CTCFL 1 dataset

ChIP FT282 GSE131931.CTCFL.FT282 288 bp overlap

DLX1 1 dataset

Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap

DLX6 1 dataset

Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap

Dlx2 1 dataset

Motif DE_12h DE_12h-Dlx2_MA0885.3 8 bp overlap

Dlx3 1 dataset

Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap

Dlx4 1 dataset

Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap

Dlx5 1 dataset

Motif DE_12h DE_12h-Dlx5_MA1476.3 8 bp overlap

ELF1 1 dataset

ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 198 bp overlap

EP300 1 dataset

ChIP tibial nerve ENCFF346AYA 236 bp overlap

ETS1 1 dataset

ChIP HEY-A8 GSE101832.ETS1.HEY-A8 305 bp overlap

EZH2 7 datasets

ChIP A673 ENCFF790MVL 185 bp overlap

ChIP KG-1_shPLZF GSE109619.EZH2.KG-1_shPLZF 373 bp overlap

ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 373 bp overlap

ChIP SF8628 GSE94834.EZH2.SF8628 373 bp overlap

ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 248 bp overlap

ChIP neural progenitor cell ENCFF018MKA 76 bp overlap

ChIP neural progenitor cell ENCFF472NFV 83 bp overlap

EZH2_phosphoT487 1 dataset

ChIP neural_progenitor ENCSR656MXA.EZH2_phosphoT487.neural_progenitor 373 bp overlap

FEZF1 3 datasets

ChIP HEK293 ENCFF528YED 92 bp overlap

ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 214 bp overlap

ChIP HEK293 GSE76494.FEZF1.HEK293 65 bp overlap

FOXA1 1 dataset

ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 232 bp overlap

GBX2 1 dataset

Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap

GLIS1 1 dataset

ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 271 bp overlap

GTF2B 1 dataset

ChIP IMR-90_TERT GSE38303.GTF2B.IMR-90_TERT 182 bp overlap

HDAC2 1 dataset

ChIP WA01 ENCSR000AVB.HDAC2.WA01 245 bp overlap

HESX1 1 dataset

Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap

HOXA6 1 dataset

Motif DE_12h DE_12h-HOXA6_MA1497.2 7 bp overlap

HOXA7 1 dataset

Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap

HOXB6 1 dataset

Motif DE_12h DE_12h-HOXB6_MA1500.2 7 bp overlap

HOXB7 1 dataset

Motif DE_12h DE_12h-HOXB7_MA1501.2 7 bp overlap

HOXB8 1 dataset

Motif DE_12h DE_12h-HOXB8_MA1502.2 7 bp overlap

HOXD3 1 dataset

Motif DE_12h DE_12h-HOXD3_MA0912.2 8 bp overlap

HOXD8 1 dataset

Motif DE_12h DE_12h-HOXD8_MA0910.3 7 bp overlap

IKZF1 1 dataset

ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 373 bp overlap

IKZF2 1 dataset

Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap

JARID2 1 dataset

ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 259 bp overlap

JMJD1C 1 dataset

ChIP HL-60 GSE63484.JMJD1C.HL-60 261 bp overlap

KDM1A 1 dataset

ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 275 bp overlap

KLF1 1 dataset

ChIP HEK293 GSE76494.KLF1.HEK293 142 bp overlap

KLF9 1 dataset

ChIP HEK293 ENCSR076EZB.KLF9.HEK293 340 bp overlap

KMT2A 2 datasets

ChIP HEK293T_C-term GSE90762.KMT2A.HEK293T_C-term 124 bp overlap

ChIP HEK293T_N-term_shCtrl GSE90762.KMT2A.HEK293T_N-term_shCtrl 373 bp overlap

LBX2 1 dataset

Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap

LHX2 1 dataset

Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap

MED12 1 dataset

ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 111 bp overlap

MSX1 1 dataset

Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap

MSX2 1 dataset

Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap

MTA2 1 dataset

ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 142 bp overlap

MXI1 1 dataset

ChIP IMR-90 ENCSR000EFE.MXI1.IMR-90 116 bp overlap

MYC 1 dataset

ChIP NB4 ENCFF142PRP 219 bp overlap

MYCN 2 datasets

ChIP COG-N-415 GSE138295.MYCN.COG-N-415 66 bp overlap

ChIP NB-1643 GSE138295.MYCN.NB-1643 262 bp overlap

MZF1 3 datasets

ChIP HEK293 ENCFF683ZWN 333 bp overlap

ChIP HEK293 ENCSR298QUH.MZF1.HEK293 373 bp overlap

ChIP HEK293 GSE76494.MZF1.HEK293 245 bp overlap

Msx3 1 dataset

Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap

NANOG 2 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 323 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 313 bp overlap

NFIA 1 dataset

Motif ES_0h ES_0h-NFIA_MA0670.2 6 bp overlap

NFIC 1 dataset

Motif ES_0h ES_0h-NFIC_MA0161.3 7 bp overlap

NFIX 1 dataset

Motif ES_0h ES_0h-NFIX_MA0671.2 6 bp overlap

NR1H2::RXRA 1 dataset

Motif ES_0h ES_0h-NR1H2RXRA_MA0115.1 17 bp overlap

NR1I2 1 dataset

Motif DE_12h DE_12h-NR1I2_MA1533.2 15 bp overlap

Nobox 1 dataset

Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap

PDX1 1 dataset

ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 221 bp overlap

PHIP 1 dataset

ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 295 bp overlap

PKNOX1 1 dataset

ChIP HEK293T ENCFF174WDB 73 bp overlap

POLR2A 9 datasets

ChIP GM23338 ENCFF450WCS 124 bp overlap

ChIP body of pancreas ENCFF675RCN 373 bp overlap

ChIP esophagus muscularis mucosa ENCFF791ZXN 245 bp overlap

ChIP gastrocnemius medialis ENCFF145VIB 373 bp overlap

ChIP gastroesophageal sphincter ENCFF238INU 362 bp overlap

ChIP gastroesophageal sphincter ENCFF826EZZ 373 bp overlap

ChIP gastroesophageal sphincter ENCFF826EZZ 209 bp overlap

ChIP ovary ENCFF425PQK 288 bp overlap

ChIP vagina ENCFF216BYP 285 bp overlap

POU5F1 2 datasets

ChIP DE_D1 DED1-OCT4_Batch_II 150 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 373 bp overlap

PRDM1 1 dataset

ChIP HEK293 ENCFF302TBP 216 bp overlap

PRDM10 1 dataset

ChIP HEK293 ENCFF145WQQ 373 bp overlap

PRDM6 1 dataset

ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 72 bp overlap

RAD21 2 datasets

ChIP RH4 GSE83726.RAD21.RH4 156 bp overlap

ChIP neural ENCSR198ZYJ.RAD21.neural 189 bp overlap

RAX 1 dataset

Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap

RBBP5 1 dataset

ChIP H1 ENCFF905HFL 175 bp overlap

RELA 1 dataset

ChIP 786-O GSE86092.RELA.786-O 104 bp overlap

REST 1 dataset

ChIP GM23338 ENCFF024TCL 193 bp overlap

RXRA 1 dataset

ChIP JMSU-1 GSE107734.RXRA.JMSU-1 139 bp overlap

SAP30 2 datasets

ChIP H1 ENCFF149IOE 62 bp overlap

ChIP WA01 ENCSR000ATR.SAP30.WA01 373 bp overlap

SIN3A 6 datasets

ChIP H1 ENCFF896IJG 301 bp overlap

ChIP PFSK-1 ENCFF218MAY 291 bp overlap

ChIP PFSK1 ENCSR000BOY.SIN3A.PFSK1 132 bp overlap

ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 119 bp overlap

ChIP WA01 ENCSR000EBO.SIN3A.WA01 332 bp overlap

ChIP WA01 ENCSR000BIS.SIN3A.WA01 373 bp overlap

SIX2 2 datasets

ChIP HEK GSE73865.SIX2.HEK 138 bp overlap

ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 97 bp overlap

SMARCA4 2 datasets

ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 90 bp overlap

ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 373 bp overlap

SMARCC1 1 dataset

ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 197 bp overlap

SMC1 1 dataset

ChIP IMR-90_OIS GSE118494.SMC1.IMR-90_OIS 134 bp overlap

SMC3 1 dataset

ChIP neural ENCSR404BPV.SMC3.neural 281 bp overlap

SP2 1 dataset

ChIP HEK293 GSE76494.SP2.HEK293 147 bp overlap

SP7 1 dataset

ChIP HEK293 ENCSR468IJT.SP7.HEK293 373 bp overlap

SPI1 1 dataset

ChIP BDMC_donorH GSE128834.SPI1.BDMC_donorH 196 bp overlap

SS18 1 dataset

ChIP Aska-SS GSE108025.SS18.Aska-SS 373 bp overlap

SUZ12 3 datasets

ChIP Aska-SS GSE108025.SUZ12.Aska-SS 373 bp overlap

ChIP WA01 ENCSR000ATS.SUZ12.WA01 157 bp overlap

ChIP hiPSC GSE124903.SUZ12.hiPSC 373 bp overlap

TAF1 1 dataset

ChIP WA01 ENCSR000BHO.TAF1.WA01 230 bp overlap

TBP 2 datasets

ChIP hESC GSE122298.TBP.hESC 211 bp overlap

ChIP hESC_10h GSE122298.TBP.hESC_10h 249 bp overlap

TCF7L1 1 dataset

Motif ES_0h ES_0h-TCF7L1_MA1421.1 12 bp overlap

TP53 1 dataset

ChIP WTC11 ENCFF359JCU 373 bp overlap

WT1 1 dataset

ChIP HEK293 ENCSR966PJJ.WT1.HEK293 312 bp overlap

ZBTB17 1 dataset

ChIP HEK293 ENCFF865LIO 274 bp overlap

ZBTB20 1 dataset

ChIP HEK293 ENCFF524ADK 344 bp overlap

ZBTB44 1 dataset

ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 195 bp overlap

ZBTB48 2 datasets

ChIP HEK293 ENCFF809BPK 185 bp overlap

ChIP HEK293 ENCSR781EQJ.ZBTB48.HEK293 307 bp overlap

ZEB2 1 dataset

ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 373 bp overlap

ZFP64 1 dataset

ChIP HEK293 GSE76494.ZFP64.HEK293 373 bp overlap

ZKSCAN3 1 dataset

Motif ES_0h ES_0h-ZKSCAN3_MA1973.2 14 bp overlap

ZNF341 2 datasets

ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 373 bp overlap

ChIP HEK293 GSE76494.ZNF341.HEK293 217 bp overlap

ZNF343 2 datasets

Motif DE_12h DE_12h-ZNF343_MA1711.2 16 bp overlap

ChIP HEK293T GSE78099.ZNF343.HEK293T 164 bp overlap

ZNF366 1 dataset

ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 373 bp overlap

ZNF384 1 dataset

Motif ES_0h ES_0h-ZNF384_MA1125.2 8 bp overlap

ZNF561 1 dataset

ChIP HEK293 ENCSR125ULS.ZNF561.HEK293 327 bp overlap

ZNF573 1 dataset

ChIP HEK293T GSE78099.ZNF573.HEK293T 240 bp overlap

ZNF574 2 datasets

Motif DE_12h DE_12h-ZNF574_MA1982.2 14 bp overlap

Motif ES_0h ES_0h-ZNF574_MA1982.2 14 bp overlap

ZNF580 1 dataset

ChIP HEK293 ENCSR668HOP.ZNF580.HEK293 177 bp overlap

ZNF600 1 dataset

ChIP HEK293 ENCFF785JSX 222 bp overlap

ZNF629 1 dataset

ChIP HEK293 ENCSR351NON.ZNF629.HEK293 327 bp overlap

ZNF660 1 dataset

ChIP HEK293 ENCSR283DOU.ZNF660.HEK293 214 bp overlap

ZNF692 1 dataset

ChIP HEK293 ENCSR418MKG.ZNF692.HEK293 272 bp overlap

ZNF76 1 dataset

ChIP HEK293 ENCSR072LQF.ZNF76.HEK293 177 bp overlap

ZNF85 1 dataset

Motif ES_0h ES_0h-ZNF85_MA1720.2 12 bp overlap

ZSCAN4 1 dataset

ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 337 bp overlap

ZXDB 1 dataset

ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 157 bp overlap