chr5 : 12,623,215 – 12,624,170
955 bp 118 TFs 1 linked gene
This 955 bp open chromatin element is linked to ENSG00000288967 and is bound by 118 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000288967 803 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:12,618,215 – 12,629,170
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
118 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 727 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 662 bp overlap
ATF4 2 datasets
Motif ES_0h ES_0h-ATF4_MA0833.3 10 bp overlap
Motif ES_0h ES_0h-ATF4_MA0833.3 10 bp overlap
BACH1 1 dataset
Motif ES_0h ES_0h-BACH1_MA1633.2 9 bp overlap
BCOR 2 datasets
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 291 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 251 bp overlap
BRD3 1 dataset
ChIP K-562_DMSO-IFNG GSE138084.BRD3.K-562_DMSO-IFNG 264 bp overlap
CBFA2T2 1 dataset
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 194 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 358 bp overlap
ChIP K562 ENCFF673OEZ 260 bp overlap
CEBPA 1 dataset
ChIP Kasumi-1_CEBPA-ER GSE102697.CEBPA.Kasumi-1_CEBPA-ER 134 bp overlap
CEBPB 1 dataset
ChIP H1 ENCFF871PTR 261 bp overlap
CEBPG 2 datasets
Motif ES_0h ES_0h-CEBPG_MA1636.2 10 bp overlap
Motif ES_0h ES_0h-CEBPG_MA1636.2 10 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 128 bp overlap
CHD7 2 datasets
ChIP hiPSC_AF22_abD3F5 GSE108506.CHD7.hiPSC_AF22_abD3F5 316 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 376 bp overlap
CREB1 4 datasets
ChIP GM23338 ENCFF432ZEW 84 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 456 bp overlap
ChIP H1 ENCFF955PMP 89 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 402 bp overlap
CREM 1 dataset
ChIP WTC11 ENCFF209ZUE 481 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 686 bp overlap
CTCF 1 dataset
ChIP GM23338 ENCFF772DML 201 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF093OYK 301 bp overlap
ChIP BLaER1 ENCFF262VBH 190 bp overlap
Crx 1 dataset
Motif ES_0h ES_0h-Crx_MA0467.3 6 bp overlap
Ddit3::Cebpa 2 datasets
Motif ES_0h ES_0h-Ddit3Cebpa_MA0019.2 10 bp overlap
Motif ES_0h ES_0h-Ddit3Cebpa_MA0019.2 10 bp overlap
E2F7 1 dataset
Motif ES_0h ES_0h-E2F7_MA0758.1 14 bp overlap
EP300 3 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 285 bp overlap
ChIP hESC GSE17917.EP300.hESC 553 bp overlap
ERG 1 dataset
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 126 bp overlap
ETS1 2 datasets
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 164 bp overlap
ChIP GM23338 ENCFF701IZH 377 bp overlap
ETV6 2 datasets
ChIP WTC11 ENCFF812SCD 341 bp overlap
ChIP WTC11 ENCFF812SCD 437 bp overlap
FLI1 1 dataset
ChIP CTV-1_DSG GSE128835.FLI1.CTV-1_DSG 125 bp overlap
FOSL1::JUND 1 dataset
Motif ES_0h ES_0h-FOSL1JUND_MA1142.2 8 bp overlap
FOXE1 1 dataset
Motif ES_0h ES_0h-FOXE1_MA1487.3 12 bp overlap
FOXJ3 1 dataset
ChIP WTC11 ENCFF909BTK 405 bp overlap
FOXK1 1 dataset
ChIP WTC11 ENCFF875IGU 391 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 203 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 377 bp overlap
GATA1 1 dataset
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 192 bp overlap
GCM2 1 dataset
Motif ES_0h ES_0h-GCM2_MA0767.2 8 bp overlap
GSC 1 dataset
Motif ES_0h ES_0h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif ES_0h ES_0h-GSC2_MA0891.2 6 bp overlap
HAND2 1 dataset
Motif ES_0h ES_0h-HAND2_MA1638.2 6 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 374 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR197ALX.HDGF.K-562 273 bp overlap
HOXD12::ELK1 1 dataset
Motif ES_0h ES_0h-HOXD12ELK1_MA1958.2 13 bp overlap
JUN 5 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 529 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 275 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 502 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 540 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 549 bp overlap
JUN::JUNB 1 dataset
Motif ES_0h ES_0h-JUNJUNB_MA1132.2 8 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000BKP.JUND.WA01 105 bp overlap
KLF4 2 datasets
ChIP WA09 GSE105028.KLF4.WA09 264 bp overlap
ChIP hiPSC GSE56567.KLF4.hiPSC 250 bp overlap
MAX 1 dataset
ChIP WTC11 ENCFF223QFY 585 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 516 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 459 bp overlap
MXI1 1 dataset
Motif ES_0h ES_0h-MXI1_MA1108.3 6 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 133 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 387 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 916 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 751 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 319 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 955 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 641 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 476 bp overlap
ChIP hESC GSE20650.NANOG.hESC 369 bp overlap
ChIP hESC GSE18292.NANOG.hESC 302 bp overlap
NCOR1 2 datasets
ChIP K-562 ENCSR798ILC.NCOR1.K-562 256 bp overlap
ChIP K562 ENCFF866HRM 445 bp overlap
NEUROG2 1 dataset
Motif ES_0h ES_0h-NEUROG2_MA1642.2 7 bp overlap
NFATC3 2 datasets
Motif ES_0h ES_0h-NFATC3_MA0625.3 6 bp overlap
Motif ES_0h ES_0h-NFATC3_MA0625.3 6 bp overlap
NFE2L1 1 dataset
ChIP WTC11 ENCFF644BPU 377 bp overlap
NIPBL 6 datasets
ChIP WA09 GSE105028.NIPBL.WA09 311 bp overlap
ChIP WA09_heat-shock GSE105028.NIPBL.WA09_heat-shock 276 bp overlap
ChIP hESC GSE64758.NIPBL.hESC 343 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 283 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 194 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 216 bp overlap
NR2F2 1 dataset
ChIP K-562 ENCSR000BRS.NR2F2.K-562 120 bp overlap
Nfatc1 2 datasets
Motif ES_0h ES_0h-Nfatc1_MA0624.3 6 bp overlap
Motif ES_0h ES_0h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 1 dataset
Motif ES_0h ES_0h-Nfatc2_MA0152.3 8 bp overlap
OTX1 1 dataset
Motif ES_0h ES_0h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
Motif ES_0h ES_0h-OTX2_MA0712.3 7 bp overlap
PHF19 1 dataset
ChIP DU145_SH4 GSE135623.PHF19.DU145_SH4 162 bp overlap
PITX1 1 dataset
Motif ES_0h ES_0h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif ES_0h ES_0h-PITX3_MA0714.2 6 bp overlap
POU2F1 1 dataset
Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap
POU2F1::SOX2 2 datasets
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
POU2F3 1 dataset
Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap
POU3F1 1 dataset
Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 149 bp overlap
POU5F1 12 datasets
Motif ES_0h ES_0h-POU5F1_MA1115.2 7 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 871 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 850 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 196 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 370 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 356 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 314 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 459 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 616 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 350 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 220 bp overlap
POU5F1B 1 dataset
Motif ES_0h ES_0h-POU5F1B_MA0792.1 9 bp overlap
Pou5f1::Sox2 3 datasets
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
Prdm4 1 dataset
Motif ES_0h ES_0h-Prdm4_MA1647.3 11 bp overlap
Ptf1A 1 dataset
Motif ES_0h ES_0h-Ptf1A_MA1618.2 9 bp overlap
RAD21 3 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 186 bp overlap
RBBP5 2 datasets
ChIP WA01 ENCSR000AQC.RBBP5.WA01 145 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 201 bp overlap
RHOXF1 1 dataset
Motif ES_0h ES_0h-RHOXF1_MA0719.2 6 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 299 bp overlap
SMAD2 1 dataset
ChIP hESC GSE29422.SMAD2.hESC 116 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 319 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 234 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 333 bp overlap
SMAD3 5 datasets
ChIP BG03 GSE21614.SMAD3.BG03 239 bp overlap
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 308 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 175 bp overlap
ChIP hESC GSE75297.SMAD3.hESC 272 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 207 bp overlap
SMARCA4 5 datasets
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 171 bp overlap
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 152 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 258 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 817 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 630 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 443 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 811 bp overlap
SMARCC1 4 datasets
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 197 bp overlap
ChIP SK-N-MC_shGFP GSE94275.SMARCC1.SK-N-MC_shGFP 383 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 522 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 623 bp overlap
SMARCE1 1 dataset
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 201 bp overlap
SOX2 3 datasets
ChIP HNSC GSE69479.SOX2.HNSC 701 bp overlap
ChIP hESC GSE18292.SOX2.hESC 163 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 451 bp overlap
SOX21 1 dataset
Motif ES_0h ES_0h-SOX21_MA0866.1 15 bp overlap
SP1 2 datasets
ChIP WA01 ENCSR000BIR.SP1.WA01 300 bp overlap
ChIP WTC11 ENCFF688PEU 501 bp overlap
SP5 1 dataset
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SPI1 2 datasets
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 126 bp overlap
ChIP K-562_NABUT GSE74999.SPI1.K-562_NABUT 132 bp overlap
Sox1 1 dataset
Motif ES_0h ES_0h-Sox1_MA0870.1 15 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 214 bp overlap
TAL1 10 datasets
ChIP K-562 GSE107726.TAL1.K-562 281 bp overlap
ChIP K-562 ENCSR106FRG.TAL1.K-562 250 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 279 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 209 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 182 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 191 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 226 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 184 bp overlap
ChIP K562 ENCFF620GMX 156 bp overlap
ChIP K562 ENCFF661CCK 277 bp overlap
TAL1::TCF3 1 dataset
Motif ES_0h ES_0h-TAL1TCF3_MA0091.2 10 bp overlap
TBP 3 datasets
ChIP hESC GSE122298.TBP.hESC 145 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 449 bp overlap
ChIP hiPSC_WTb_RNase-neg GSE128135.TBP.hiPSC_WTb_RNase-neg 309 bp overlap
TCF12 3 datasets
ChIP K-562 ENCSR744WOO.TCF12.K-562 228 bp overlap
ChIP K562 ENCFF931DJY 391 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 301 bp overlap
TCF3 3 datasets
ChIP K-562 ENCSR970OJY.TCF3.K-562 227 bp overlap
ChIP K562 ENCFF319QZT 381 bp overlap
ChIP NPC GSE154479.TCF3.NPC 631 bp overlap
TEAD1 2 datasets
ChIP WTC11 ENCFF502QUV 405 bp overlap
ChIP WTC11 ENCFF502QUV 405 bp overlap
TGIF2 1 dataset
ChIP WTC11 ENCFF649SHI 441 bp overlap
TRIM24 1 dataset
ChIP K-562 ENCSR907MZR.TRIM24.K-562 244 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 167 bp overlap
TWIST1 1 dataset
Motif ES_0h ES_0h-TWIST1_MA1123.3 8 bp overlap
YY1 4 datasets
ChIP H1 ENCFF524BTL 328 bp overlap
ChIP H1 ENCFF524BTL 337 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 252 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 127 bp overlap
ZBTB12 1 dataset
Motif ES_0h ES_0h-ZBTB12_MA1649.2 7 bp overlap
ZBTB18 2 datasets
Motif ES_0h ES_0h-ZBTB18_MA0698.2 11 bp overlap
Motif ES_0h ES_0h-ZBTB18_MA0698.2 11 bp overlap
ZFP42 1 dataset
Motif ES_0h ES_0h-ZFP42_MA1651.2 13 bp overlap
ZKSCAN1 1 dataset
ChIP K-562 ENCSR882ERE.ZKSCAN1.K-562 127 bp overlap
ZKSCAN5 1 dataset
Motif ES_0h ES_0h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF184 1 dataset
ChIP WTC11 ENCFF352POG 497 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 605 bp overlap
ZNF316 2 datasets
ChIP K-562 ENCSR200JYP.ZNF316.K-562 203 bp overlap
ChIP K562 ENCFF281INV 253 bp overlap
ZNF410 1 dataset
Motif ES_0h ES_0h-ZNF410_MA0752.2 16 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 860 bp overlap
ZSCAN21 1 dataset
Motif ES_0h ES_0h-ZSCAN21_MA2336.1 7 bp overlap
Zfp335 1 dataset
Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap
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