chr3 : 146,152,999 146,153,254
255 bp 111 TFs 1 linked gene
This 255 bp open chromatin element is linked to PLOD2 and is bound by 111 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
PLOD2 7.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:146,147,999 – 146,158,254
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
111 transcription factors
Source
Cell type
ARID3A 1 dataset
ChIP HepG2 ENCFF341DES 255 bp overlap
ARID4B 1 dataset
ChIP HepG2 ENCFF519OXJ 255 bp overlap
ARID5B 1 dataset
ChIP HepG2 ENCFF964FWK 81 bp overlap
ARNT 1 dataset
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 104 bp overlap
ARNTL 1 dataset
ChIP Hep-G2 ENCSR794LVK.ARNTL.Hep-G2 200 bp overlap
ASH2L 1 dataset
ChIP Hep-G2 ENCSR508LMH.ASH2L.Hep-G2 255 bp overlap
ATF3 1 dataset
ChIP Hep-G2 ENCSR402ZCY.ATF3.Hep-G2 122 bp overlap
BCL6 1 dataset
ChIP HepG2 ENCFF423EJH 250 bp overlap
BRD4 2 datasets
ChIP HCC1395 GSE63581.BRD4.HCC1395 255 bp overlap
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 108 bp overlap
BRF1 1 dataset
ChIP H9_Activin GSE94418.BRF1.H9_Activin 148 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 161 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 129 bp overlap
CHD7 2 datasets
ChIP hiPSC_AF22_abD3F5 GSE108506.CHD7.hiPSC_AF22_abD3F5 255 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 191 bp overlap
CTCF 4 datasets
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 200 bp overlap
ChIP hiPSC_IIIB12 GSE106870.CTCF.hiPSC_IIIB12 140 bp overlap
ChIP thyroid gland ENCFF204HWS 126 bp overlap
ChIP thyroid gland ENCFF204HWS 255 bp overlap
CTCFL 1 dataset
ChIP FT282 GSE131931.CTCFL.FT282 119 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 217 bp overlap
DMAP1 1 dataset
ChIP Hep-G2 ENCSR670YPQ.DMAP1.Hep-G2 136 bp overlap
EBF1 1 dataset
Motif DE_12h DE_12h-EBF1_MA0154.5 11 bp overlap
ELF1 1 dataset
ChIP Hep-G2 ENCSR321VGW.ELF1.Hep-G2 165 bp overlap
EP300 4 datasets
ChIP Hep-G2 ENCSR000BLW.EP300.Hep-G2 217 bp overlap
ChIP Hep-G2 ENCSR000EDV.EP300.Hep-G2 122 bp overlap
ChIP HepG2 ENCFF354ACD 151 bp overlap
ChIP fibroblast_senescent GSE106146.EP300.fibroblast_senescent 252 bp overlap
ESR1 3 datasets
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 180 bp overlap
ChIP MCF-7_SHCTR_E2_TNF GSE59530.ESR1.MCF-7_SHCTR_E2_TNF 129 bp overlap
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 162 bp overlap
Ebf4 1 dataset
Motif DE_12h DE_12h-Ebf4_MA2122.1 11 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
FOSL2 1 dataset
ChIP HepG2 ENCFF548CXY 197 bp overlap
FOXA2 1 dataset
ChIP HepG2 ENCFF894AYY 188 bp overlap
FOXK1 1 dataset
ChIP Hep-G2 ENCSR603BJQ.FOXK1.Hep-G2 175 bp overlap
FOXP1 1 dataset
ChIP Hep-G2 ENCSR369YUK.FOXP1.Hep-G2 124 bp overlap
FOXP4 2 datasets
ChIP Hep-G2 ENCSR232LLP.FOXP4.Hep-G2 89 bp overlap
ChIP HepG2 ENCFF462ULY 198 bp overlap
GATAD2A 1 dataset
ChIP HepG2 ENCFF252XNH 135 bp overlap
HIC2 1 dataset
ChIP HepG2 ENCFF927POV 255 bp overlap
HMGXB4 2 datasets
ChIP Hep-G2 ENCSR174GOO.HMGXB4.Hep-G2 91 bp overlap
ChIP Hep-G2 ENCSR599XKG.HMGXB4.Hep-G2 208 bp overlap
HNF4A 2 datasets
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 126 bp overlap
ChIP HepG2 ENCFF146SSF 187 bp overlap
HNRNPH1 2 datasets
ChIP Hep-G2 GSE120104.HNRNPH1.Hep-G2 157 bp overlap
ChIP Hep-G2 ENCSR066FXN.HNRNPH1.Hep-G2 159 bp overlap
HNRNPL 4 datasets
ChIP Hep-G2 GSE120104.HNRNPL.Hep-G2 156 bp overlap
ChIP Hep-G2 ENCSR315JJE.HNRNPL.Hep-G2 136 bp overlap
ChIP HepG2 ENCFF671UYF 255 bp overlap
ChIP HepG2 ENCFF684GAM 255 bp overlap
HOXA3 1 dataset
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 104 bp overlap
HOXA5 1 dataset
ChIP HepG2 ENCFF580MCT 228 bp overlap
ISL2 1 dataset
ChIP Hep-G2 ENCSR492IHH.ISL2.Hep-G2 132 bp overlap
JUN 1 dataset
ChIP MDA-MB-231 GSE112444.JUN.MDA-MB-231 143 bp overlap
KDM1A 1 dataset
ChIP HepG2 ENCFF240UWG 255 bp overlap
KDM5B 1 dataset
ChIP T-47D GSE46055.KDM5B.T-47D 159 bp overlap
KLF6 1 dataset
ChIP Hep-G2 ENCSR757EKM.KLF6.Hep-G2 103 bp overlap
KMT2A 1 dataset
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 144 bp overlap
LCOR 1 dataset
ChIP HepG2 ENCFF499KCU 230 bp overlap
LIN54 1 dataset
ChIP HepG2 ENCFF662XDE 255 bp overlap
MAX 1 dataset
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 100 bp overlap
MED1 2 datasets
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 174 bp overlap
ChIP Hep-G2 ENCSR959XNY.MED1.Hep-G2 88 bp overlap
MED13 1 dataset
ChIP HepG2 ENCFF143ZBX 139 bp overlap
MEN1 1 dataset
ChIP PC-3 GSE132827.MEN1.PC-3 255 bp overlap
MTA1 1 dataset
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 143 bp overlap
MYBL2 1 dataset
ChIP Hep-G2 ENCSR581KCO.MYBL2.Hep-G2 106 bp overlap
MYNN 1 dataset
ChIP Hep-G2 ENCSR398TMP.MYNN.Hep-G2 167 bp overlap
NANOG 1 dataset
ChIP WA01 ERP004238.NANOG.WA01 191 bp overlap
NCOA2 1 dataset
ChIP HepG2 ENCFF853BJJ 224 bp overlap
NCOR1 1 dataset
ChIP HEK293T_SICTR GSE35197.NCOR1.HEK293T_SICTR 120 bp overlap
NFKB1 2 datasets
ChIP L1236 GSE63736.NFKB1.L1236 207 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.NFKB1.MCF10A-Er-Src_TAM 158 bp overlap
NFKB2 1 dataset
ChIP L1236 GSE63736.NFKB2.L1236 176 bp overlap
NFYC 1 dataset
ChIP Hep-G2 ENCSR569ARC.NFYC.Hep-G2 96 bp overlap
NR3C1 1 dataset
ChIP A-549 ENCSR000BHE.NR3C1.A-549 127 bp overlap
NRIP1 1 dataset
ChIP MCF-7 ERP005838.NRIP1.MCF-7 134 bp overlap
PAX3-FOXO1 2 datasets
ChIP Hs-352-Sk_PAX3-FOXO1-vector GSE83725.PAX3-FOXO1.Hs-352-Sk_PAX3-FOXO1-vector 118 bp overlap
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 115 bp overlap
PAXIP1 2 datasets
ChIP Hep-G2 ENCSR530ARJ.PAXIP1.Hep-G2 165 bp overlap
ChIP HepG2 ENCFF526NOJ 255 bp overlap
PHF8 2 datasets
ChIP Hep-G2 ENCSR604VAE.PHF8.Hep-G2 150 bp overlap
ChIP HepG2 ENCFF065NWR 255 bp overlap
PHOX2B 1 dataset
Motif DE_12h DE_12h-PHOX2B_MA0681.3 12 bp overlap
POLR2A 7 datasets
ChIP HepG2 ENCFF350RIU 234 bp overlap
ChIP body of pancreas ENCFF501FEC 255 bp overlap
ChIP body of pancreas ENCFF675RCN 255 bp overlap
ChIP body of pancreas ENCFF727UBE 255 bp overlap
ChIP esophagus muscularis mucosa ENCFF759BBR 255 bp overlap
ChIP esophagus muscularis mucosa ENCFF791ZXN 183 bp overlap
ChIP thyroid gland ENCFF979LRR 235 bp overlap
POU3F3 1 dataset
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
PPARG 1 dataset
ChIP Hep-G2 ENCSR130VQL.PPARG.Hep-G2 142 bp overlap
RAD21 1 dataset
ChIP HepG2 ENCFF906QIS 193 bp overlap
RELA 11 datasets
ChIP 786-O GSE86092.RELA.786-O 255 bp overlap
ChIP HAEC_IL1b_4h GSE89970.RELA.HAEC_IL1b_4h 179 bp overlap
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 255 bp overlap
ChIP HUVEC-C_TNF-30min GSE121890.RELA.HUVEC-C_TNF-30min 155 bp overlap
ChIP HUVEC-C_TNF_30M GSE34500.RELA.HUVEC-C_TNF_30M 155 bp overlap
ChIP HeLa-B2_TA_TNFA GSE24518.RELA.HeLa-B2_TA_TNFA 246 bp overlap
ChIP HeLa-B2_TNFA GSE24518.RELA.HeLa-B2_TNFA 204 bp overlap
ChIP IMR-90_TNF GSE43070.RELA.IMR-90_TNF 218 bp overlap
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 185 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 163 bp overlap
ChIP aortic-endothelial-cell_IL1B_D49 GSE139377.RELA.aortic-endothelial-cell_IL1B_D49 164 bp overlap
RREB1 1 dataset
ChIP HepG2 ENCFF986CSN 188 bp overlap
SMAD3 1 dataset
ChIP Hep-G2 ENCSR005GZH.SMAD3.Hep-G2 144 bp overlap
SMAD4 1 dataset
ChIP HepG2 ENCFF615GTE 201 bp overlap
SMARCA4 1 dataset
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 167 bp overlap
SOX13 1 dataset
ChIP HepG2 ENCFF062VSQ 76 bp overlap
SOX5 1 dataset
ChIP HepG2 ENCFF470KZD 232 bp overlap
SOX6 2 datasets
ChIP Hep-G2 ENCSR766TSU.SOX6.Hep-G2 131 bp overlap
ChIP HepG2 ENCFF767OCK 255 bp overlap
SSRP1 1 dataset
ChIP hiF-T GSE98758.SSRP1.hiF-T 204 bp overlap
STAT3 1 dataset
ChIP A139 GSE85579.STAT3.A139 213 bp overlap
TAF1 1 dataset
ChIP Hep-G2 ENCSR918OKK.TAF1.Hep-G2 136 bp overlap
TBP 2 datasets
ChIP Hep-G2 ENCSR000EEL.TBP.Hep-G2 207 bp overlap
ChIP HepG2 ENCFF023IVD 181 bp overlap
TEAD1 1 dataset
ChIP HepG2 ENCFF661PNM 186 bp overlap
TEAD3 1 dataset
ChIP HepG2 ENCFF054UUL 210 bp overlap
TEAD4 4 datasets
ChIP Hep-G2 ENCSR000BRP.TEAD4.Hep-G2 51 bp overlap
ChIP HepG2 ENCFF006QNB 188 bp overlap
ChIP HepG2 ENCFF250NXO 197 bp overlap
ChIP T-47D_Veh GSE125594.TEAD4.T-47D_Veh 185 bp overlap
TFAP4 3 datasets
ChIP Hep-G2 ENCSR103SZL.TFAP4.Hep-G2 190 bp overlap
ChIP HepG2 ENCFF030SRU 255 bp overlap
ChIP HepG2 ENCFF932XOY 161 bp overlap
Tfcp2l1 1 dataset
Motif DE_12h DE_12h-Tfcp2l1_MA0145.2 14 bp overlap
U2AF1 1 dataset
ChIP Hep-G2 GSE120104.U2AF1.Hep-G2 201 bp overlap
UBTF 1 dataset
ChIP HepG2 ENCFF424RNN 255 bp overlap
VDR 1 dataset
ChIP kidney-cortex GSE129585.VDR.kidney-cortex 255 bp overlap
ZBED4 1 dataset
ChIP Hep-G2 ENCSR409PMR.ZBED4.Hep-G2 122 bp overlap
ZBTB34 1 dataset
ChIP HepG2 ENCFF161MIO 255 bp overlap
ZBTB37 1 dataset
ChIP HepG2 ENCFF717TTW 253 bp overlap
ZEB1 1 dataset
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZFY 2 datasets
ChIP Hep-G2 ENCSR949OEV.ZFY.Hep-G2 147 bp overlap
ChIP HepG2 ENCFF106ELT 255 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 255 bp overlap
ZMYM4 1 dataset
ChIP HepG2 ENCFF567SQY 255 bp overlap
ZNF12 1 dataset
ChIP Hep-G2 ENCSR711KBM.ZNF12.Hep-G2 138 bp overlap
ZNF143 2 datasets
ChIP MCF-7 GSE76454.ZNF143.MCF-7 137 bp overlap
ChIP MCF-7_E2 GSE76454.ZNF143.MCF-7_E2 133 bp overlap
ZNF331 1 dataset
ChIP HepG2 ENCFF842SZN 197 bp overlap
ZNF609 1 dataset
ChIP HepG2 ENCFF900FRP 255 bp overlap
ZNF644 1 dataset
ChIP HepG2 ENCFF352VGJ 235 bp overlap