chr3 : 43,285,716 43,286,040
324 bp 104 TFs 1 linked gene
This 324 bp open chromatin element is linked to SNRK and is bound by 104 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
SNRK 544 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:43,280,716 – 43,291,040
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
104 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 117 bp overlap
ARID4A 1 dataset
ChIP HepG2 ENCFF142DIE 52 bp overlap
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 128 bp overlap
ChIP Hep-G2 ENCSR508LMH.ASH2L.Hep-G2 236 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 311 bp overlap
ATF1 1 dataset
ChIP K-562 ENCSR091GVJ.ATF1.K-562 159 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 227 bp overlap
BRD2 1 dataset
ChIP THP-1_DMSO GSE138084.BRD2.THP-1_DMSO 79 bp overlap
BRD4 9 datasets
ChIP 22Rv1_DHT-DMSO GSE118247.BRD4.22Rv1_DHT-DMSO 211 bp overlap
ChIP HAP1 GSE108387.BRD4.HAP1 134 bp overlap
ChIP HCC1937 GSE124748.BRD4.HCC1937 118 bp overlap
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 248 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 132 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 129 bp overlap
ChIP retina_AB1-FW13 GSE86981.BRD4.retina_AB1-FW13 320 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 59 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 270 bp overlap
CHD1 2 datasets
ChIP WA01 ENCSR000AQK.CHD1.WA01 184 bp overlap
ChIP WA01 ENCSR000EBU.CHD1.WA01 118 bp overlap
CHD8 1 dataset
ChIP T-47D_ETOH_45 GSE62428.CHD8.T-47D_ETOH_45 159 bp overlap
CREB1 1 dataset
ChIP KG-1_XX65023 GSE74928.CREB1.KG-1_XX65023 272 bp overlap
CTCF 58 datasets
ChIP 22Rv1 ENCFF466OXN 147 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 75 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 70 bp overlap
ChIP CD14-positive monocyte ENCFF087XLR 223 bp overlap
ChIP CD4-positive, alpha-beta T cell ENCFF277LDE 112 bp overlap
ChIP CD8-positive, alpha-beta T cell ENCFF092PSD 126 bp overlap
ChIP HFFc6 ENCFF005CJI 112 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 92 bp overlap
ChIP Loucy ENCFF359TVQ 62 bp overlap
ChIP MCF 10A ENCFF988BGF 52 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 68 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 74 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 61 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-020m-Flavo-000m 109 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 109 bp overlap
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 110 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 58 bp overlap
ChIP activated CD4-positive, alpha-beta T cell ENCFF095PZX 226 bp overlap
ChIP activated CD8-positive, alpha-beta T cell ENCFF006MHW 202 bp overlap
ChIP adrenal gland ENCFF257AUK 69 bp overlap
ChIP adrenal gland ENCFF596QXB 65 bp overlap
ChIP adrenal-gland ENCSR450BLH.CTCF.adrenal-gland 67 bp overlap
ChIP anterior-temporal-cortex_adult GSE116825.CTCF.anterior-temporal-cortex_adult 231 bp overlap
ChIP body of pancreas ENCFF756FGB 104 bp overlap
ChIP brain ENCFF067KUH 102 bp overlap
ChIP brain ENCFF099ASU 153 bp overlap
ChIP breast epithelium ENCFF341QWO 59 bp overlap
ChIP chondrocyte ENCFF134ORZ 99 bp overlap
ChIP colon_transverse ENCSR769WKR.CTCF.colon_transverse 171 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF092NXX 103 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF265AZL 59 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF277CZQ 55 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF628TCI 58 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 52 bp overlap
ChIP esophagus squamous epithelium ENCFF797YPG 86 bp overlap
ChIP gastroesophageal-sphincter ENCSR206ETG.CTCF.gastroesophageal-sphincter 139 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 133 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 167 bp overlap
ChIP heart left ventricle ENCFF769GAB 60 bp overlap
ChIP heart left ventricle ENCFF888ERQ 62 bp overlap
ChIP heart right ventricle ENCFF725NNJ 69 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 156 bp overlap
ChIP natural killer cell ENCFF517SNI 119 bp overlap
ChIP nephron ENCFF411ACD 118 bp overlap
ChIP nephron ENCFF589HXU 74 bp overlap
ChIP nephron progenitor cell ENCFF455DMI 84 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 62 bp overlap
ChIP neural progenitor cell ENCFF581WPG 82 bp overlap
ChIP neuron GSE115407.CTCF.neuron 147 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 65 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 115 bp overlap
ChIP right lobe of liver ENCFF250KSY 59 bp overlap
ChIP skin ENCSR485VQV.CTCF.skin 70 bp overlap
ChIP spleen ENCFF326DUY 74 bp overlap
ChIP spleen ENCSR225YGX.CTCF.spleen 53 bp overlap
ChIP thyroid gland ENCFF163TUI 54 bp overlap
ChIP transverse colon ENCFF454PBI 93 bp overlap
ChIP upper lobe of left lung ENCFF654BFF 61 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 251 bp overlap
DMAP1 1 dataset
ChIP HepG2 ENCFF247MSU 100 bp overlap
DMTF1 1 dataset
ChIP K562 ENCFF947QUY 324 bp overlap
DPF2 1 dataset
ChIP K562 ENCFF775HUO 142 bp overlap
E2F1 6 datasets
ChIP K-562 ENCSR563LLO.E2F1.K-562 66 bp overlap
ChIP K562 ENCFF191BFW 59 bp overlap
ChIP LNCaP_shCON GSE94958.E2F1.LNCaP_shCON 58 bp overlap
ChIP MCF-7 ENCFF692OYJ 107 bp overlap
ChIP MCF-7 ENCSR000EWX.E2F1.MCF-7 233 bp overlap
ChIP U-87MG_GBM GSE99171.E2F1.U-87MG_GBM 114 bp overlap
E2F6 2 datasets
ChIP A549 ENCFF550XVR 69 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 324 bp overlap
EP400 1 dataset
ChIP K562 ENCFF850OZQ 154 bp overlap
ESR1 4 datasets
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 164 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 319 bp overlap
ChIP breast_tumor_Female_2 GSE104399.ESR1.breast_tumor_Female_2 52 bp overlap
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 97 bp overlap
ESRRA 2 datasets
ChIP BT-474 GSE81651.ESRRA.BT-474 221 bp overlap
Motif DE_12h DE_12h-ESRRA_MA0592.4 9 bp overlap
ETS1 1 dataset
ChIP HUVEC-C_VEGF_4H GSE41166.ETS1.HUVEC-C_VEGF_4H 76 bp overlap
EZH2 1 dataset
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 155 bp overlap
Esrrg 1 dataset
Motif DE_12h DE_12h-Esrrg_MA0643.2 9 bp overlap
FOXA1 3 datasets
ChIP 22Rv1_CST_Crispr_WT3 GSE123618.FOXA1.22Rv1_CST_Crispr_WT3 188 bp overlap
ChIP liver ERP002306.FOXA1.liver 189 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 104 bp overlap
GABPB1 1 dataset
ChIP K562 ENCFF885NMS 324 bp overlap
GMEB1 1 dataset
ChIP K562 ENCFF705LHX 76 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 225 bp overlap
HDAC1 2 datasets
ChIP K562 ENCFF968WBH 60 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 77 bp overlap
KDM4A 2 datasets
ChIP H1 ENCFF078LED 324 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 156 bp overlap
KDM5B 1 dataset
ChIP HepG2 ENCFF706LUI 120 bp overlap
KMT2A 2 datasets
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 55 bp overlap
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 127 bp overlap
L3MBTL2 3 datasets
ChIP HEK293T ENCSR862PNL.L3MBTL2.HEK293T 63 bp overlap
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 59 bp overlap
ChIP K562 ENCFF320EQC 51 bp overlap
LIN54 1 dataset
ChIP Hep-G2 ENCSR597MCV.LIN54.Hep-G2 253 bp overlap
MAX 5 datasets
ChIP A549 ENCFF310XGQ 58 bp overlap
ChIP H1 ENCFF914VQY 192 bp overlap
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 271 bp overlap
ChIP K562 ENCFF398VJM 50 bp overlap
ChIP MDA-MB-468 GSE81381.MAX.MDA-MB-468 55 bp overlap
MED1 2 datasets
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 228 bp overlap
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 237 bp overlap
MEN1 1 dataset
ChIP PC-3 GSE132827.MEN1.PC-3 324 bp overlap
MGA 1 dataset
ChIP HepG2 ENCFF057YJE 174 bp overlap
MNT 4 datasets
ChIP K562 ENCFF342DNS 105 bp overlap
ChIP K562 ENCFF450LDL 52 bp overlap
ChIP K562 ENCFF820IGH 83 bp overlap
ChIP MCF-7 ENCSR663ZZZ.MNT.MCF-7 184 bp overlap
MXD4 1 dataset
ChIP Hep-G2 ENCSR441KFW.MXD4.Hep-G2 147 bp overlap
MYBL2 1 dataset
ChIP Hep-G2 ENCSR581KCO.MYBL2.Hep-G2 141 bp overlap
MYC 1 dataset
ChIP NB69 GSE138295.MYC.NB69 306 bp overlap
MYCN 3 datasets
ChIP Kelly GSE94822.MYCN.Kelly 61 bp overlap
ChIP LNCaP_DHT GSE117304.MYCN.LNCaP_DHT 282 bp overlap
ChIP LNCaP_EtOH GSE117304.MYCN.LNCaP_EtOH 192 bp overlap
NANOG 1 dataset
ChIP WA01 ENCSR000BMT.NANOG.WA01 119 bp overlap
NFKB1 1 dataset
ChIP HEK293T GSE129618.NFKB1.HEK293T 176 bp overlap
NR2C1 1 dataset
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
NR2C2 2 datasets
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
ChIP K562 ENCFF750AXF 104 bp overlap
NR2F1 1 dataset
Motif DE_12h DE_12h-NR2F1_MA0017.3 12 bp overlap
NR2F2 2 datasets
Motif DE_12h DE_12h-NR2F2_MA1111.2 7 bp overlap
ChIP liver ENCSR168SMX.NR2F2.liver 79 bp overlap
NR2F6 1 dataset
ChIP Hep-G2 ENCSR518WPL.NR2F6.Hep-G2 172 bp overlap
NR4A1 1 dataset
Motif DE_12h DE_12h-NR4A1_MA1112.3 8 bp overlap
NR4A2 1 dataset
Motif DE_12h DE_12h-NR4A2_MA0160.3 8 bp overlap
Nr1H2 1 dataset
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
Nr2f6 1 dataset
Motif DE_12h DE_12h-Nr2f6_MA0677.2 13 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 199 bp overlap
PHF20 1 dataset
ChIP HepG2 ENCFF609JBM 56 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 121 bp overlap
POU5F1 4 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 81 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 130 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 183 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 225 bp overlap
PPARG 1 dataset
ChIP HUVEC-C_DMSO_HYPO GSE50144.PPARG.HUVEC-C_DMSO_HYPO 156 bp overlap
PRDM10 2 datasets
ChIP HEK293 ENCFF145WQQ 92 bp overlap
ChIP Hep-G2 ENCSR289PSX.PRDM10.Hep-G2 304 bp overlap
Ppara 1 dataset
Motif DE_12h DE_12h-Ppara_MA2338.1 7 bp overlap
RAD21 2 datasets
ChIP HeLa-S3_CTCF-s-OE GSE108869.RAD21.HeLa-S3_CTCF-s-OE 92 bp overlap
ChIP liver ENCFF485PAC 64 bp overlap
RB1 1 dataset
ChIP MCF-7_siH1.2 GSE98728.RB1.MCF-7_siH1.2 124 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 244 bp overlap
RERE 1 dataset
ChIP K562 ENCFF203AHY 324 bp overlap
RNF2 2 datasets
ChIP A-549 ENCSR798EGJ.RNF2.A-549 152 bp overlap
ChIP K562 ENCFF061ATI 243 bp overlap
RORA 1 dataset
Motif DE_12h DE_12h-RORA_MA0071.1 10 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 267 bp overlap
RXRB 1 dataset
Motif DE_12h DE_12h-RXRB_MA0855.1 14 bp overlap
RXRG 1 dataset
Motif DE_12h DE_12h-RXRG_MA0856.1 14 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 324 bp overlap
Rarg 1 dataset
Motif DE_12h DE_12h-Rarg_MA0860.1 17 bp overlap
Rxra 1 dataset
Motif DE_12h DE_12h-Rxra_MA0512.2 14 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 170 bp overlap
SIN3A 1 dataset
ChIP Hep-G2 ENCSR000BGL.SIN3A.Hep-G2 130 bp overlap
SMAD3 1 dataset
ChIP Hep-G2 ENCSR005GZH.SMAD3.Hep-G2 121 bp overlap
SMC3 1 dataset
ChIP neural ENCSR404BPV.SMC3.neural 74 bp overlap
STAT3 1 dataset
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 90 bp overlap
TBX2 1 dataset
ChIP HepG2 ENCFF811TLA 57 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 215 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 324 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 298 bp overlap
TFDP1 3 datasets
ChIP K562 ENCFF584VSB 73 bp overlap
ChIP K562 ENCFF794ZXJ 289 bp overlap
ChIP K562 ENCFF794ZXJ 81 bp overlap
TFDP2 2 datasets
ChIP Hep-G2 ENCSR069JKP.TFDP2.Hep-G2 113 bp overlap
ChIP HepG2 ENCFF794WDW 51 bp overlap
THRA 1 dataset
Motif DE_12h DE_12h-THRA_MA1969.2 18 bp overlap
YY1 3 datasets
ChIP HCT-116 ENCSR000BNX.YY1.HCT-116 137 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 150 bp overlap
ChIP liver ENCFF400MBC 82 bp overlap
ZBED4 1 dataset
ChIP HepG2 ENCFF157CDZ 302 bp overlap
ZBTB40 1 dataset
ChIP K562 ENCFF521DSV 100 bp overlap
ZFP91 1 dataset
ChIP HepG2 ENCFF012CME 50 bp overlap
ZFX 1 dataset
ChIP K562 ENCFF536AJO 134 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 224 bp overlap
ZNF189 2 datasets
ChIP HEK293 ENCFF638TIB 177 bp overlap
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 102 bp overlap
ZNF217 1 dataset
ChIP HepG2 ENCFF455XGO 69 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 185 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 219 bp overlap
ZNF449 2 datasets
ChIP HEK293 ENCFF764ZIC 241 bp overlap
ChIP HEK293 ENCSR738SLS.ZNF449.HEK293 193 bp overlap
ZNF605 2 datasets
ChIP HepG2 ENCFF640NFJ 324 bp overlap
ChIP HepG2 ENCFF640NFJ 265 bp overlap
ZNF639 1 dataset
ChIP K562 ENCFF271FQR 249 bp overlap
ZSCAN29 1 dataset
ChIP K562 ENCFF797SOU 58 bp overlap