chr2 : 71,002,259 71,002,506
247 bp 98 TFs 3 linked genes
This 247 bp open chromatin element is linked to TEX261, ENSG00000258881, and ENSG00000228384 and is bound by 98 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
TEX261 7.4 kb Proximal Proximity
ENSG00000258881 7.5 kb Proximal Proximity
ENSG00000228384 7.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:70,997,259 – 71,007,506
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
98 transcription factors
Source
Cell type
AR 1 dataset
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 137 bp overlap
ASCL1 1 dataset
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 154 bp overlap
ATF4 1 dataset
ChIP HepG2 ENCFF903ADR 247 bp overlap
Ascl2 1 dataset
Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 247 bp overlap
BRD4 3 datasets
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 165 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 247 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 247 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 135 bp overlap
CRX 2 datasets
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 189 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 247 bp overlap
CTCF 7 datasets
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 195 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 171 bp overlap
ChIP CD14 ENCSR000ATN.CTCF.CD14 98 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 227 bp overlap
ChIP HT-1080 GSE135580.CTCF.HT-1080 247 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 88 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 109 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 218 bp overlap
DDX5 1 dataset
ChIP NTERA2 GSE58641.DDX5.NTERA2 247 bp overlap
E4F1 1 dataset
ChIP GM12878 ENCSR439WAF.E4F1.GM12878 105 bp overlap
ELF1 1 dataset
ChIP Hep-G2 ENCSR321VGW.ELF1.Hep-G2 145 bp overlap
EP300 3 datasets
ChIP neural ENCSR843ZUP.EP300.neural 216 bp overlap
ChIP neural cell ENCFF442QNK 247 bp overlap
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 129 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
FOXP1 1 dataset
ChIP Hep-G2 ENCSR369YUK.FOXP1.Hep-G2 136 bp overlap
GABPB1 1 dataset
ChIP WTC11 ENCFF166QKI 247 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 72 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 151 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 178 bp overlap
HAND2 1 dataset
ChIP Kelly GSE94822.HAND2.Kelly 204 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 247 bp overlap
HNF4A 6 datasets
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 208 bp overlap
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 160 bp overlap
ChIP Hep-G2 ERP000209.HNF4A.Hep-G2 125 bp overlap
ChIP Hep-G2 ENCSR000BLF.HNF4A.Hep-G2 116 bp overlap
ChIP HepG2 ENCFF146SSF 247 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 154 bp overlap
JMJD1C 1 dataset
ChIP HL-60 GSE63484.JMJD1C.HL-60 142 bp overlap
JUN 2 datasets
ChIP 786-O GSE86092.JUN.786-O 194 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 138 bp overlap
KDM3A 1 dataset
ChIP Hep-G2 ENCSR387JKT.KDM3A.Hep-G2 143 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 148 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 155 bp overlap
KLF1 1 dataset
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 192 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 202 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 135 bp overlap
KLF5 1 dataset
ChIP ESO-26 GSE132680.KLF5.ESO-26 174 bp overlap
KLF9 2 datasets
Motif DE_12h DE_12h-KLF9_MA1107.3 11 bp overlap
Motif ES_0h ES_0h-KLF9_MA1107.3 11 bp overlap
KMT2A 1 dataset
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 201 bp overlap
MAX 1 dataset
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 164 bp overlap
MAZ 1 dataset
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 227 bp overlap
MEF2D 3 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 79 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 69 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 176 bp overlap
MNT 1 dataset
ChIP HepG2 ENCFF701PYP 205 bp overlap
MTA1 1 dataset
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 165 bp overlap
MXI1 4 datasets
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
Motif ES_0h ES_0h-MXI1_MA1108.3 6 bp overlap
Motif ES_0h ES_0h-MXI1_MA1108.3 6 bp overlap
MYCN 2 datasets
ChIP Kelly GSE94822.MYCN.Kelly 133 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 139 bp overlap
MYOG 1 dataset
Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap
NANOG 6 datasets
ChIP H1 ENCFF747ZPQ 176 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 148 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 247 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 247 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 144 bp overlap
ChIP hESC GSE18292.NANOG.hESC 95 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 235 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
PCBP1 1 dataset
ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 122 bp overlap
PLAG1 1 dataset
Motif DE_12h DE_12h-PLAG1_MA0163.1 14 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 232 bp overlap
POU5F1 7 datasets
ChIP BG03 GSE21614.POU5F1.BG03 163 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 247 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 247 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 156 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 247 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 191 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 64 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 247 bp overlap
PRDM14 1 dataset
ChIP hESC GSE138674.PRDM14.hESC 172 bp overlap
REST 2 datasets
ChIP neural ENCSR000BTV.REST.neural 230 bp overlap
ChIP neural cell ENCFF882LXX 240 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 226 bp overlap
SALL1 1 dataset
ChIP HepG2 ENCFF426MCK 247 bp overlap
SAP130 1 dataset
ChIP HepG2 ENCFF892EHZ 247 bp overlap
SIN3A 3 datasets
ChIP H1 ENCFF042ZSL 247 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 170 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 157 bp overlap
SMAD1 1 dataset
ChIP Hep-G2 ENCSR213QOZ.SMAD1.Hep-G2 211 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 136 bp overlap
SMARCA4 4 datasets
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 179 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 228 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 200 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 247 bp overlap
SOX2 4 datasets
ChIP HNSC GSE69479.SOX2.HNSC 205 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 185 bp overlap
ChIP RENVM_SHSOX2 GSE49404.SOX2.RENVM_SHSOX2 117 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 168 bp overlap
SP1 1 dataset
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
SP2 1 dataset
Motif DE_12h DE_12h-SP2_MA0516.3 9 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
ChIP Hep-G2 ENCSR019NPF.SP5.Hep-G2 148 bp overlap
SRF 2 datasets
ChIP K-562 ENCSR582IAO.SRF.K-562 175 bp overlap
ChIP K562 ENCFF766EOO 247 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 123 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 216 bp overlap
TFAP2A 1 dataset
Motif DE_12h DE_12h-TFAP2A_MA0003.5 9 bp overlap
TFAP2B 1 dataset
Motif DE_12h DE_12h-TFAP2B_MA0812.2 9 bp overlap
TFAP2C 5 datasets
Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap
ChIP MCF-7_E2 GSE23852.TFAP2C.MCF-7_E2 136 bp overlap
ChIP MCF-7_ETOH GSE23852.TFAP2C.MCF-7_ETOH 210 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 247 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 247 bp overlap
TFAP2E 1 dataset
Motif DE_12h DE_12h-TFAP2E_MA1569.2 9 bp overlap
TFAP4 1 dataset
ChIP Hep-G2 ENCSR103SZL.TFAP4.Hep-G2 144 bp overlap
TP53 2 datasets
Motif DE_12h DE_12h-TP53_MA0106.3 18 bp overlap
Motif ES_0h ES_0h-TP53_MA0106.3 18 bp overlap
TP63 5 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 123 bp overlap
ChIP keratinocyte GSE33571.TP63.keratinocyte 149 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 126 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 158 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 148 bp overlap
TP73 2 datasets
Motif DE_12h DE_12h-TP73_MA0861.2 16 bp overlap
Motif ES_0h ES_0h-TP73_MA0861.2 16 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 127 bp overlap
ZBTB2 1 dataset
ChIP Hep-G2 GSE97661.ZBTB2.Hep-G2 74 bp overlap
ZNF276 1 dataset
ChIP HepG2 ENCFF431WQQ 247 bp overlap
ZNF292 1 dataset
ChIP HepG2 ENCFF975MAJ 247 bp overlap
ZNF317 2 datasets
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
Motif ES_0h ES_0h-ZNF317_MA1593.2 8 bp overlap
ZNF331 2 datasets
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
Motif ES_0h ES_0h-ZNF331_MA1726.2 10 bp overlap
ZNF343 1 dataset
Motif DE_12h DE_12h-ZNF343_MA1711.2 16 bp overlap
ZNF549 1 dataset
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap
ZNF574 1 dataset
Motif DE_12h DE_12h-ZNF574_MA1982.2 14 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 181 bp overlap
ZNF865 1 dataset
ChIP HepG2 ENCFF472KAQ 108 bp overlap
ZSCAN4 4 datasets
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap
Motif ES_0h ES_0h-ZSCAN4_MA1155.1 15 bp overlap
ChIP HEK293 ENCFF381BKT 192 bp overlap
ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 247 bp overlap