Transcription factors with Perturb-seq knockdown data for ENSG00000228384. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = ENSG00000228384 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of ENSG00000228384, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr2:70,984,781–70,985,145 | 9.4 kb | Proximal (<10kb) | 252 | |
| chr2:70,994,406–70,995,235 | at TSS | At TSS | 805 | |
| chr2:70,995,330–70,995,669 | 821 bp | At TSS | 361 | |
| chr2:71,001,145–71,001,559 | 6.6 kb | Proximal (<10kb) | 583 | |
| chr2:71,002,259–71,002,506 | 7.8 kb | Proximal (<10kb) | 98 |
Genomic view of the ENSG00000228384 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.