chr14 : 89,293,361 89,294,256
895 bp 120 TFs 2 linked genes
This 895 bp open chromatin element is linked to EFCAB11 and TDP1 and is bound by 120 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
EFCAB11 661.0 kb Distal Multiome+HiCAR
TDP1 662.2 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr14:89,288,361 – 89,299,256
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
120 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP WTC11 ENCFF556XTF 246 bp overlap
ASCL1 1 dataset
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 136 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 895 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 541 bp overlap
Atoh1 1 dataset
Motif DE_12h DE_12h-Atoh1_MA0461.3 8 bp overlap
BCOR 3 datasets
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 162 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 245 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 326 bp overlap
BRD1 2 datasets
ChIP HUES-64 GSE104059.BRD1.HUES-64 265 bp overlap
ChIP HUES-64 GSE104059.BRD1.HUES-64 306 bp overlap
BRD4 2 datasets
ChIP HUVEC-C GSE60171.BRD4.HUVEC-C 446 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 114 bp overlap
CREB1 6 datasets
ChIP GM23338 ENCFF432ZEW 305 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 322 bp overlap
ChIP H1 ENCFF955PMP 321 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 151 bp overlap
ChIP WTC11 ENCFF297VCI 371 bp overlap
ChIP WTC11 ENCFF297VCI 371 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 438 bp overlap
CTCF 1 dataset
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 207 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 162 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 190 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 525 bp overlap
EGR1 1 dataset
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 164 bp overlap
EP300 3 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 253 bp overlap
ChIP hESC GSE17917.EP300.hESC 437 bp overlap
ETS1 2 datasets
ChIP GM23338 ENCFF701IZH 377 bp overlap
ChIP hESC ENCSR534VHI.ETS1.hESC 186 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 437 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
FLI1 1 dataset
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 143 bp overlap
FOXK1 1 dataset
ChIP WTC11 ENCFF875IGU 391 bp overlap
FOXO1 1 dataset
ChIP CD34 GSE80773.FOXO1.CD34 132 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 235 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 377 bp overlap
GATA4 1 dataset
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 84 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 785 bp overlap
HDAC2 5 datasets
ChIP H1 ENCFF353UJQ 617 bp overlap
ChIP H1 ENCFF353UJQ 645 bp overlap
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 146 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 284 bp overlap
JUN 7 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 391 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 717 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 670 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 895 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 568 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 895 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 838 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000BKP.JUND.WA01 113 bp overlap
LDB1 1 dataset
ChIP Kasumi-1_siRE GSE121280.LDB1.Kasumi-1_siRE 87 bp overlap
MAX 4 datasets
ChIP H1 ENCFF601FOM 325 bp overlap
ChIP H1 ENCFF914VQY 357 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 157 bp overlap
ChIP WTC11 ENCFF223QFY 585 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 299 bp overlap
MITF 1 dataset
ChIP melanocyte_BRAFV600E GSE50681.MITF.melanocyte_BRAFV600E 110 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 147 bp overlap
MXI1 2 datasets
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
Motif ES_0h ES_0h-MXI1_MA1108.3 6 bp overlap
MYBL2 1 dataset
ChIP WTC11 ENCFF166TKT 497 bp overlap
MYOD1 1 dataset
Motif DE_12h DE_12h-MYOD1_MA0499.3 9 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 283 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 803 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 543 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 128 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 621 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 484 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 480 bp overlap
ChIP hESC GSE20650.NANOG.hESC 151 bp overlap
ChIP hESC GSE18292.NANOG.hESC 198 bp overlap
NEUROG2 3 datasets
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 244 bp overlap
ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 205 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 222 bp overlap
NFE2L1 1 dataset
ChIP WTC11 ENCFF644BPU 377 bp overlap
NIPBL 5 datasets
ChIP WA09 GSE105028.NIPBL.WA09 260 bp overlap
ChIP hESC GSE64758.NIPBL.hESC 291 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 215 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 364 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 225 bp overlap
NR2F2 2 datasets
ChIP liver ENCFF565JGD 332 bp overlap
ChIP liver ENCSR168SMX.NR2F2.liver 221 bp overlap
NRF1 1 dataset
ChIP HMEC-1 GSE67867.NRF1.HMEC-1 165 bp overlap
PGR 1 dataset
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 167 bp overlap
POLR2A 4 datasets
ChIP GM23338 ENCFF450WCS 491 bp overlap
ChIP HL-60 ENCFF321XKE 69 bp overlap
ChIP MCF-7 ENCFF309IKZ 204 bp overlap
ChIP spleen ENCFF446ZGT 220 bp overlap
POU3F1 1 dataset
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
POU5F1 10 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 895 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 895 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 439 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 850 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 309 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 391 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 259 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 627 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 309 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 895 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Ptf1A 1 dataset
Motif DE_12h DE_12h-Ptf1A_MA1620.2 8 bp overlap
RAD21 1 dataset
ChIP WA09 GSE105028.RAD21.WA09 249 bp overlap
RBBP5 3 datasets
ChIP H1 ENCFF905HFL 637 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 746 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 95 bp overlap
RREB1 1 dataset
Motif DE_12h DE_12h-RREB1_MA0073.2 19 bp overlap
RUNX1 3 datasets
ChIP Kasumi-1 GSE45738.RUNX1.Kasumi-1 151 bp overlap
ChIP NB4 GSE81992.RUNX1.NB4 96 bp overlap
ChIP SKNO-1 GSE23730.RUNX1.SKNO-1 51 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE43834.RUNX1T1.Kasumi-1 114 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 524 bp overlap
Runx1 1 dataset
Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 380 bp overlap
SCRT1 1 dataset
Motif DE_12h DE_12h-SCRT1_MA0743.3 10 bp overlap
SCRT2 1 dataset
Motif DE_12h DE_12h-SCRT2_MA0744.3 10 bp overlap
SIN3A 4 datasets
ChIP H1 ENCFF896IJG 301 bp overlap
ChIP HUVEC-C GSE103245.SIN3A.HUVEC-C 102 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 115 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 179 bp overlap
SIX4 1 dataset
ChIP WTC11 ENCFF891HYW 377 bp overlap
SMAD1 1 dataset
ChIP Hep-G2 ENCSR213QOZ.SMAD1.Hep-G2 145 bp overlap
SMAD2 4 datasets
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
ChIP hESC GSE29422.SMAD2.hESC 295 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 794 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 444 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 785 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 784 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 717 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 815 bp overlap
SMAD2_3 7 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 744 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 613 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 792 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 601 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 617 bp overlap
ChIP ESC S23-ESC-d0-SMAD2_3-exp1 438 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 681 bp overlap
SMAD3 4 datasets
ChIP BG03 GSE21614.SMAD3.BG03 272 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 290 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 428 bp overlap
ChIP hESC_DIFF_D1 GSE75297.SMAD3.hESC_DIFF_D1 313 bp overlap
SMAD4 1 dataset
ChIP hESC GSE29422.SMAD4.hESC 270 bp overlap
SMARCA4 3 datasets
ChIP WA09 GSE105028.SMARCA4.WA09 240 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 532 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 659 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 652 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 452 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 422 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 376 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 664 bp overlap
SNAI2 1 dataset
Motif DE_12h DE_12h-SNAI2_MA0745.3 8 bp overlap
SNAI3 1 dataset
Motif DE_12h DE_12h-SNAI3_MA1559.2 9 bp overlap
SOX2 3 datasets
ChIP H9 GSE46837.SOX2.H9 170 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 181 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 347 bp overlap
SP1 2 datasets
ChIP WA01 ENCSR000BIR.SP1.WA01 221 bp overlap
ChIP WTC11 ENCFF688PEU 501 bp overlap
SPIB 1 dataset
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
SREBF2 1 dataset
Motif DE_12h DE_12h-SREBF2_MA0596.1 10 bp overlap
STAT3 1 dataset
Motif DE_12h DE_12h-STAT3_MA0144.3 9 bp overlap
STAT6 1 dataset
ChIP WTC11 ENCFF271RMR 191 bp overlap
Stat6 1 dataset
Motif DE_12h DE_12h-Stat6_MA0520.2 10 bp overlap
TAF1 1 dataset
ChIP H1 ENCFF478SZO 485 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 297 bp overlap
TCF3 2 datasets
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 299 bp overlap
ChIP NPC GSE154479.TCF3.NPC 675 bp overlap
TEAD4 2 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 483 bp overlap
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 105 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 613 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 235 bp overlap
TFAP4 1 dataset
ChIP Kasumi-1 GSE45738.TFAP4.Kasumi-1 293 bp overlap
THRA 1 dataset
Motif DE_12h DE_12h-THRA_MA1969.2 18 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 707 bp overlap
YEATS4 1 dataset
ChIP HepG2 ENCFF340OIC 193 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 132 bp overlap
ZBTB21 2 datasets
ChIP WTC11 ENCFF677ZYY 401 bp overlap
ChIP WTC11 ENCFF677ZYY 401 bp overlap
ZEB1 1 dataset
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZFX 1 dataset
ChIP MCF-7 GSE102616.ZFX.MCF-7 52 bp overlap
ZIC1 1 dataset
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
ZKSCAN3 1 dataset
Motif DE_12h DE_12h-ZKSCAN3_MA1973.2 14 bp overlap
ZKSCAN8 1 dataset
ChIP WTC11 ENCFF666HNJ 345 bp overlap
ZNF114 1 dataset
ChIP GM23338 ENCFF631OSW 357 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 476 bp overlap
ZNF281 1 dataset
ChIP WTC11 ENCFF551GAV 377 bp overlap
ZNF317 2 datasets
ChIP HEK293 GSE76494.ZNF317.HEK293 173 bp overlap
ChIP WTC11 ENCFF537KXI 357 bp overlap
ZNF407 2 datasets
ChIP Hep-G2 ENCSR005WGY.ZNF407.Hep-G2 75 bp overlap
ChIP Hep-G2 ENCSR005WGY.ZNF407.Hep-G2 134 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 175 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 561 bp overlap
ZNF530 2 datasets
Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap
Motif ES_0h ES_0h-ZNF530_MA1981.2 14 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 105 bp overlap
ZNF610 1 dataset
Motif DE_12h DE_12h-ZNF610_MA1713.2 10 bp overlap
ZNF687 1 dataset
ChIP HepG2 ENCFF653WIX 345 bp overlap