chr1 : 21,491,962 21,492,562
600 bp 116 TFs 5 linked genes
This 600 bp open chromatin element is linked to 5 target genes and is bound by 116 transcription factors.
Linked Genes
5 genes
Gene Expression Dist. to TSS Distance Link type
ALPL 17.1 kb Distal Multiome
NBPF3 52.2 kb Distal Multiome
ECE1 146.8 kb Distal Multiome
RAP1GAP 177.0 kb Distal Multiome
USP48 291.3 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:21,486,962 – 21,497,562
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
116 transcription factors
Source
Cell type
ASCL1 2 datasets
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 159 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 177 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 307 bp overlap
BRD3 1 dataset
ChIP K-562_dilution-6-100 GSE140325.BRD3.K-562_dilution-6-100 105 bp overlap
BRD4 4 datasets
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 333 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 251 bp overlap
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 159 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-pos 205 bp overlap
CHD4 2 datasets
ChIP RH5 GSE155861.CHD4.RH5 220 bp overlap
ChIP pre-B-cell GSE107886.CHD4.pre-B-cell 318 bp overlap
CTCF 2 datasets
ChIP HT-1080 GSE135580.CTCF.HT-1080 424 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 210 bp overlap
Cebpa 4 datasets
ChIP BLaER1 ENCFF031ISE 262 bp overlap
ChIP BLaER1 ENCFF093OYK 396 bp overlap
ChIP BLaER1 ENCFF274GAT 486 bp overlap
ChIP BLaER1 ENCFF364PUR 255 bp overlap
DPF2 2 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.DPF2.BIN-67_lentivirus-SMARCA4 262 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-K785R 183 bp overlap
EBF1 5 datasets
ChIP GM12878 ENCFF167CZS 321 bp overlap
ChIP GM12878 ENCFF167CZS 148 bp overlap
ChIP GM12878 ENCSR000DZQ.EBF1.GM12878 128 bp overlap
ChIP MUTUL GSE75503.EBF1.MUTUL 600 bp overlap
ChIP NALM-6 GSE126300.EBF1.NALM-6 600 bp overlap
ELF1 1 dataset
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 90 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 172 bp overlap
EP300 2 datasets
ChIP Ishikawa ENCFF364ZWT 285 bp overlap
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 191 bp overlap
ESR1 3 datasets
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 155 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 383 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 600 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 115 bp overlap
ETS1 1 dataset
ChIP HUVEC-C_VEGF_1H GSE41166.ETS1.HUVEC-C_VEGF_1H 63 bp overlap
EZH2 2 datasets
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 326 bp overlap
ChIP SF8628 GSE94834.EZH2.SF8628 551 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 141 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 223 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 255 bp overlap
FLI1 3 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 250 bp overlap
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 280 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 181 bp overlap
FOSL2 1 dataset
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 161 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 487 bp overlap
ChIP DE DE-FOXA2-2 600 bp overlap
FOXO1-PAX3 2 datasets
ChIP RH4_DMSO-6H GSE116344.FOXO1-PAX3.RH4_DMSO-6H 234 bp overlap
ChIP RH4_Entinostat-6H GSE116344.FOXO1-PAX3.RH4_Entinostat-6H 373 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 318 bp overlap
ChIP DE DE-GATA4-2 600 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 322 bp overlap
ChIP DE DE-GATA6-2 600 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 486 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 126 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 145 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 240 bp overlap
GLIS1 3 datasets
ChIP HEK293 ENCFF299RSE 228 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 251 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 184 bp overlap
HDAC2 2 datasets
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 237 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 204 bp overlap
HSF1 1 dataset
ChIP HCT-116_KOFBXW7 GSE57398.HSF1.HCT-116_KOFBXW7 269 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 600 bp overlap
IKZF3 3 datasets
ChIP HEK293 ENCFF518OXG 267 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 223 bp overlap
ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 600 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 91 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 251 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 178 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 217 bp overlap
KLF5 2 datasets
ChIP HEK293_E419K GSE88976.KLF5.HEK293_E419K 217 bp overlap
ChIP HEK293_E419Q GSE88976.KLF5.HEK293_E419Q 215 bp overlap
KMT2C 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2C.BIN-67_lentivirus-SMARCA4 299 bp overlap
KMT2D 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4 356 bp overlap
MAX 1 dataset
ChIP Ishikawa ENCFF064TDQ 179 bp overlap
MAZ 3 datasets
ChIP HEK293 ENCFF994GSG 352 bp overlap
ChIP HEK293 GSE76494.MAZ.HEK293 218 bp overlap
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 214 bp overlap
MEIS1 1 dataset
ChIP CHRF28811 ERR063469.MEIS1.CHRF28811 95 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 591 bp overlap
MTA2 3 datasets
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 243 bp overlap
ChIP RH4 GSE155861.MTA2.RH4 272 bp overlap
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 354 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 279 bp overlap
MYOD1 1 dataset
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 224 bp overlap
MZF1 3 datasets
ChIP HEK293 ENCFF683ZWN 56 bp overlap
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 221 bp overlap
ChIP HEK293 GSE76494.MZF1.HEK293 185 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 569 bp overlap
NFIA 1 dataset
ChIP K-562 GSE97661.NFIA.K-562 180 bp overlap
NFIC 4 datasets
ChIP Ishikawa ENCFF029AAD 205 bp overlap
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 331 bp overlap
ChIP K-562 ENCSR796ITY.NFIC.K-562 246 bp overlap
ChIP K562 ENCFF167YID 346 bp overlap
NR2F1 1 dataset
ChIP GM12878 ENCSR514VYD.NR2F1.GM12878 108 bp overlap
NR2F2 1 dataset
ChIP liver ENCSR168SMX.NR2F2.liver 143 bp overlap
NR3C1 1 dataset
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 137 bp overlap
OSR2 3 datasets
ChIP HEK293 ENCFF875BDB 343 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 207 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 147 bp overlap
PATZ1 2 datasets
ChIP HEK293 ENCFF016MNJ 200 bp overlap
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 240 bp overlap
PBX1 1 dataset
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 273 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 444 bp overlap
PRDM4 2 datasets
ChIP HEK293 ENCFF069PHD 318 bp overlap
ChIP HEK293 ENCSR443MVV.PRDM4.HEK293 251 bp overlap
PRDM6 3 datasets
ChIP HEK293 ENCFF283AJL 336 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 274 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 221 bp overlap
RAD21 3 datasets
ChIP Ishikawa ENCFF570JVV 198 bp overlap
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 166 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 278 bp overlap
RBBP4 1 dataset
ChIP RH5 GSE155861.RBBP4.RH5 246 bp overlap
RUNX1 3 datasets
ChIP 697 GSE138031.RUNX1.697 189 bp overlap
ChIP 697 GSE138031.RUNX1.697 95 bp overlap
ChIP NALM-6 GSE126300.RUNX1.NALM-6 290 bp overlap
SCRT1 3 datasets
ChIP HEK293 ENCFF513YVP 157 bp overlap
ChIP HEK293 ENCFF513YVP 411 bp overlap
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 525 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 334 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 600 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 256 bp overlap
SMARCA2 1 dataset
ChIP SK-N-MC_shEWSFLI1 GSE94275.SMARCA2.SK-N-MC_shEWSFLI1 600 bp overlap
SMARCA4 5 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 502 bp overlap
ChIP BT-16_Dox GSE71504.SMARCA4.BT-16_Dox 193 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 300 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 249 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 242 bp overlap
SMARCC1 4 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 217 bp overlap
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 131 bp overlap
ChIP SK-N-MC_shEWSFLI1 GSE94275.SMARCC1.SK-N-MC_shEWSFLI1 230 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 276 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 600 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 600 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 196 bp overlap
SOX8 1 dataset
ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 228 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 430 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 386 bp overlap
SS18 2 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 277 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SS18.BIN-67_lentivirus-SMARCA4-K785R 89 bp overlap
STAT3 1 dataset
ChIP MDA-MB-157_EtOH GSE85579.STAT3.MDA-MB-157_EtOH 281 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
TCF12 1 dataset
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 191 bp overlap
TCF3 1 dataset
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 466 bp overlap
TEAD4 2 datasets
ChIP Ishikawa ENCFF772OTG 230 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 202 bp overlap
TP63 1 dataset
ChIP breast-organoid GSE113909.TP63.breast-organoid 224 bp overlap
TRIM24 1 dataset
ChIP MOLM-13_IACS-9571 GSE100571.TRIM24.MOLM-13_IACS-9571 182 bp overlap
TRIM28 4 datasets
ChIP HEK293 ENCFF265CEM 567 bp overlap
ChIP HEK293 ENCFF582MWI 503 bp overlap
ChIP HEK293 ENCSR618HNF.TRIM28.HEK293 485 bp overlap
ChIP U2OS ENCSR000EYC.TRIM28.U2OS 486 bp overlap
VDR 1 dataset
ChIP THP-1_1d_1-25-OH-2D3 GSE89431.VDR.THP-1_1d_1-25-OH-2D3 110 bp overlap
WT1 2 datasets
ChIP HEK293 ENCFF906HIR 222 bp overlap
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 243 bp overlap
XRCC5 2 datasets
ChIP K-562 ENCSR506KWJ.XRCC5.K-562 179 bp overlap
ChIP K-562 GSE120104.XRCC5.K-562 183 bp overlap
YY1 3 datasets
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 232 bp overlap
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 152 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 154 bp overlap
ZBTB26 1 dataset
ChIP HEK293 GSE76494.ZBTB26.HEK293 156 bp overlap
ZBTB44 2 datasets
ChIP HEK293 ENCFF560VPN 248 bp overlap
ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 214 bp overlap
ZBTB48 2 datasets
ChIP HEK293 ENCFF809BPK 465 bp overlap
ChIP HEK293 ENCSR781EQJ.ZBTB48.HEK293 578 bp overlap
ZBTB7A 1 dataset
ChIP Ishikawa ENCSR000BSZ.ZBTB7A.Ishikawa 135 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 224 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 195 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 403 bp overlap
ZNF189 2 datasets
ChIP HEK293 ENCFF638TIB 501 bp overlap
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 509 bp overlap
ZNF24 1 dataset
ChIP HEK293 ENCSR984MDV.ZNF24.HEK293 254 bp overlap
ZNF30 1 dataset
ChIP HEK293 GSE76494.ZNF30.HEK293 130 bp overlap
ZNF317 1 dataset
ChIP HEK293 GSE76494.ZNF317.HEK293 196 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 380 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 558 bp overlap
ZNF341 3 datasets
ChIP HEK293 ENCFF944VMC 245 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 292 bp overlap
ChIP HEK293 GSE76494.ZNF341.HEK293 212 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 244 bp overlap
ZNF423 1 dataset
ChIP HEK293 ENCFF937QHI 340 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 239 bp overlap
ZNF501 2 datasets
ChIP HEK293 ENCFF066RAQ 153 bp overlap
ChIP HEK293 ENCFF066RAQ 354 bp overlap
ZNF528 2 datasets
ChIP HEK293 GSE76494.ZNF528.HEK293 207 bp overlap
ChIP HEK293 GSE76494.ZNF528.HEK293 271 bp overlap
ZNF549 1 dataset
ChIP HEK293 GSE76494.ZNF549.HEK293 158 bp overlap
ZNF558 1 dataset
ChIP HEK293 ENCFF994JWH 295 bp overlap
ZNF561 2 datasets
ChIP HEK293 ENCFF399XKF 205 bp overlap
ChIP HEK293 ENCSR125ULS.ZNF561.HEK293 210 bp overlap
ZNF574 1 dataset
ChIP HEK293 GSE76494.ZNF574.HEK293 282 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 209 bp overlap
ZNF629 2 datasets
ChIP HEK293 ENCFF096ELQ 432 bp overlap
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 231 bp overlap
ZNF660 2 datasets
ChIP HEK293 ENCFF282RUS 315 bp overlap
ChIP HEK293 ENCSR283DOU.ZNF660.HEK293 235 bp overlap
ZNF692 2 datasets
ChIP HEK293 ENCFF040AZE 327 bp overlap
ChIP HEK293 ENCSR418MKG.ZNF692.HEK293 209 bp overlap
ZNF777 1 dataset
ChIP HEK293T GSE78099.ZNF777.HEK293T 126 bp overlap
ZNF816 1 dataset
ChIP HEK293 GSE76494.ZNF816.HEK293 142 bp overlap
ZSCAN16 3 datasets
ChIP HEK293 ENCFF533NFT 105 bp overlap
ChIP HEK293 GSE76494.ZSCAN16.HEK293 468 bp overlap
ChIP HEK293 ENCSR864VJE.ZSCAN16.HEK293 398 bp overlap
ZSCAN30 2 datasets
ChIP HEK293 ENCFF082YBI 264 bp overlap
ChIP HEK293 ENCSR768VNZ.ZSCAN30.HEK293 163 bp overlap
ZXDB 2 datasets
ChIP HEK293 ENCFF835SGA 370 bp overlap
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 249 bp overlap