chr10 : 43,401,712 – 43,401,985
273 bp 112 TFs 1 linked gene
This 273 bp open chromatin element is linked to HNRNPF and is bound by 112 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
HNRNPF 4.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr10:43,396,712 – 43,406,985
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
112 transcription factors
Source
Cell type
AFF1 1 dataset
ChIP SEM_DMSO GSE90762.AFF1.SEM_DMSO 126 bp overlap
AR 1 dataset
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 140 bp overlap
ARID2 2 datasets
ChIP Aska-SS GSE108025.ARID2.Aska-SS 237 bp overlap
ChIP Aska-SS_shSSX GSE108025.ARID2.Aska-SS_shSSX 273 bp overlap
ARNTL 1 dataset
ChIP U2OS GSE44236.ARNTL.U2OS 273 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 273 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 156 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 273 bp overlap
BRD4 1 dataset
ChIP MV4-11_IBET151_5000nM GSE120715.BRD4.MV4-11_IBET151_5000nM 131 bp overlap
CHD1 2 datasets
ChIP WA01 ENCSR000AQK.CHD1.WA01 273 bp overlap
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 204 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 195 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 167 bp overlap
DRAP1 1 dataset
ChIP Hep-G2 ENCSR765MKZ.DRAP1.Hep-G2 205 bp overlap
EBF1 3 datasets
Motif DE_12h DE_12h-EBF1_MA0154.5 11 bp overlap
ChIP GM12878 ENCFF167CZS 239 bp overlap
ChIP GM12878 ENCSR000DZQ.EBF1.GM12878 129 bp overlap
EBF3 2 datasets
Motif DE_12h DE_12h-EBF3_MA1637.2 9 bp overlap
Motif DE_12h DE_12h-EBF3_MA1637.2 9 bp overlap
ELF3 2 datasets
ChIP PDAC GSE64557.ELF3.PDAC 207 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 161 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 168 bp overlap
EZH2 1 dataset
ChIP hESC GSE113817.EZH2.hESC 209 bp overlap
Ebf2 2 datasets
Motif DE_12h DE_12h-Ebf2_MA1604.2 9 bp overlap
Motif DE_12h DE_12h-Ebf2_MA1604.2 9 bp overlap
Ebf4 1 dataset
Motif DE_12h DE_12h-Ebf4_MA2122.1 11 bp overlap
FEZF1 1 dataset
ChIP HEK293 GSE76494.FEZF1.HEK293 183 bp overlap
FOS 1 dataset
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 84 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 240 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 235 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 273 bp overlap
GLIS2 2 datasets
ChIP HEK293 ENCFF446EIF 273 bp overlap
ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 273 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 273 bp overlap
HDAC1 1 dataset
ChIP NB4 GSE126720.HDAC1.NB4 56 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 183 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR197ALX.HDGF.K-562 208 bp overlap
IKZF1 5 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 273 bp overlap
ChIP K562 ENCFF348IBL 273 bp overlap
ChIP K562 ENCFF348IBL 191 bp overlap
ChIP K562 ENCFF771OHZ 234 bp overlap
ChIP K562 ENCFF771OHZ 141 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 217 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 273 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 273 bp overlap
KLF4 1 dataset
ChIP PDAC GSE64557.KLF4.PDAC 273 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 157 bp overlap
KMT2A 5 datasets
ChIP CCRF-CEM GSE83671.KMT2A.CCRF-CEM 267 bp overlap
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 269 bp overlap
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 273 bp overlap
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 273 bp overlap
ChIP SEM GSE83671.KMT2A.SEM 273 bp overlap
MAX 1 dataset
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 168 bp overlap
MED1 2 datasets
ChIP LS180 GSE39277.MED1.LS180 99 bp overlap
ChIP MCF-7_SHRARS GSE60270.MED1.MCF-7_SHRARS 168 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MEN1 1 dataset
ChIP OCI-AML-3_DMSO GSE129636.MEN1.OCI-AML-3_DMSO 273 bp overlap
MLLT1_FKB 1 dataset
ChIP MV4-11 GSE82116.MLLT1_FKB.MV4-11 258 bp overlap
MTA2 1 dataset
ChIP K-562 ENCSR411UYA.MTA2.K-562 98 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 222 bp overlap
NANOG 6 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 273 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 271 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 195 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 273 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 216 bp overlap
ChIP hESC GSE18292.NANOG.hESC 61 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 203 bp overlap
NIPBL 1 dataset
ChIP HCT-116_RAD21-mAC GSE104888.NIPBL.HCT-116_RAD21-mAC 208 bp overlap
NR3C1 1 dataset
ChIP SUP-B15_DEX GSE107584.NR3C1.SUP-B15_DEX 86 bp overlap
NR5A1 1 dataset
Motif DE_12h DE_12h-NR5A1_MA1540.3 12 bp overlap
PGR 1 dataset
ChIP AB32 GSE31129.PGR.AB32 169 bp overlap
PHIP 3 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 92 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 195 bp overlap
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 88 bp overlap
POLR2A 5 datasets
ChIP H1 ENCFF833NJP 273 bp overlap
ChIP HeLa-S3 ENCFF773DNG 273 bp overlap
ChIP K562 ENCFF137JSF 116 bp overlap
ChIP K562 ENCFF514URW 236 bp overlap
ChIP Panc1 ENCFF290KAB 162 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 273 bp overlap
PRDM10 2 datasets
ChIP HEK293 ENCFF145WQQ 273 bp overlap
ChIP Hep-G2 ENCSR289PSX.PRDM10.Hep-G2 105 bp overlap
PROX1 1 dataset
Motif DE_12h DE_12h-PROX1_MA0794.1 12 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 93 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 157 bp overlap
RBFOX2 1 dataset
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 273 bp overlap
RBM22 2 datasets
ChIP HepG2 ENCFF292RVQ 256 bp overlap
ChIP HepG2 ENCFF561IAJ 237 bp overlap
RBM39 2 datasets
ChIP K-562 GSE120104.RBM39.K-562 223 bp overlap
ChIP K-562 ENCSR764OXF.RBM39.K-562 214 bp overlap
RELB 1 dataset
Motif DE_12h DE_12h-RELB_MA1117.2 7 bp overlap
REST 4 datasets
ChIP H1 ENCFF429RUE 245 bp overlap
ChIP K-562 ENCSR000BMW.REST.K-562 172 bp overlap
ChIP K562 ENCFF430APM 231 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 191 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 177 bp overlap
SIN3A 4 datasets
ChIP H1 ENCFF042ZSL 273 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 127 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 153 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 171 bp overlap
SIX1 2 datasets
Motif DE_12h DE_12h-SIX1_MA1118.2 9 bp overlap
ChIP Hep-G2 ENCSR561BQM.SIX1.Hep-G2 273 bp overlap
SIX2 4 datasets
Motif DE_12h DE_12h-SIX2_MA1119.2 11 bp overlap
ChIP HEK GSE73865.SIX2.HEK 273 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 253 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 241 bp overlap
SIX4 1 dataset
ChIP WTC11 ENCFF891HYW 273 bp overlap
SMAD4 1 dataset
ChIP K562 ENCFF628RBP 110 bp overlap
SMAD5 1 dataset
ChIP K-562 ENCSR000FCD.SMAD5.K-562 273 bp overlap
SMARCA4 6 datasets
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 273 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 119 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 253 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 269 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 261 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 273 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 266 bp overlap
SMARCC1 4 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 273 bp overlap
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 148 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 216 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 222 bp overlap
SOX2 2 datasets
ChIP H9 GSE46837.SOX2.H9 176 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 157 bp overlap
SP1 3 datasets
ChIP H1 ENCFF263FUH 251 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 191 bp overlap
ChIP WTC11 ENCFF688PEU 273 bp overlap
STAT1_pS727 1 dataset
ChIP SET-2 GSE100566.STAT1_pS727.SET-2 147 bp overlap
STAT3 2 datasets
Motif DE_12h DE_12h-STAT3_MA0144.3 9 bp overlap
Motif ES_0h ES_0h-STAT3_MA0144.3 9 bp overlap
SUPT5H 2 datasets
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 226 bp overlap
ChIP DLD-1_NELFCD-AID_treated GSE144786.SUPT5H.DLD-1_NELFCD-AID_treated 51 bp overlap
Six4 1 dataset
Motif DE_12h DE_12h-Six4_MA2001.2 7 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 273 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 232 bp overlap
TARDBP 1 dataset
ChIP K-562 GSE120104.TARDBP.K-562 184 bp overlap
TBP 3 datasets
ChIP H1 ENCFF859IIO 267 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 249 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 141 bp overlap
TBX1 1 dataset
Motif DE_12h DE_12h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_12h DE_12h-TBX15_MA0803.1 8 bp overlap
TBX2 1 dataset
Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_12h DE_12h-TBX20_MA0689.1 11 bp overlap
TBX21 1 dataset
Motif DE_12h DE_12h-TBX21_MA0690.3 10 bp overlap
TBX3 1 dataset
Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap
TBX4 1 dataset
Motif DE_12h DE_12h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif DE_12h DE_12h-TBX5_MA0807.1 8 bp overlap
TCF12 2 datasets
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 204 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 197 bp overlap
TEAD1 4 datasets
ChIP H69 GSE62274.TEAD1.H69 161 bp overlap
ChIP HEK293_siE1A GSE130135.TEAD1.HEK293_siE1A 118 bp overlap
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 176 bp overlap
ChIP WTC11 ENCFF502QUV 273 bp overlap
TEAD4 5 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 273 bp overlap
ChIP H1 ENCFF778PAX 219 bp overlap
ChIP HEK293_siCtrl GSE130135.TEAD4.HEK293_siCtrl 234 bp overlap
ChIP HEK293_siE1A GSE130135.TEAD4.HEK293_siE1A 185 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 171 bp overlap
TFAP2A 2 datasets
Motif DE_12h DE_12h-TFAP2A_MA0810.2 11 bp overlap
ChIP WA09 GSE105081.TFAP2A.WA09 158 bp overlap
TFAP2B 1 dataset
Motif DE_12h DE_12h-TFAP2B_MA0811.2 11 bp overlap
TFAP2C 3 datasets
Motif DE_12h DE_12h-TFAP2C_MA0524.3 11 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 273 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 273 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 245 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 121 bp overlap
XRCC5 1 dataset
ChIP K-562 GSE120104.XRCC5.K-562 217 bp overlap
YY1 2 datasets
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 250 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 159 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 188 bp overlap
ZBTB7A 2 datasets
ChIP Ishikawa ENCSR000BSZ.ZBTB7A.Ishikawa 225 bp overlap
ChIP K-562 GSE103445.ZBTB7A.K-562 82 bp overlap
ZEB1 1 dataset
ChIP PDAC GSE64557.ZEB1.PDAC 273 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 205 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 224 bp overlap
ZNF281 1 dataset
ChIP K562 ENCFF594VNM 76 bp overlap
ZNF317 1 dataset
ChIP HEK293 GSE76494.ZNF317.HEK293 167 bp overlap
ZNF407 1 dataset
ChIP Hep-G2 ENCSR005WGY.ZNF407.Hep-G2 169 bp overlap
ZNF423 2 datasets
ChIP HEK293 ENCFF937QHI 257 bp overlap
ChIP WTC11 ENCFF574PBR 269 bp overlap
ZNF490 1 dataset
ChIP HEK293 GSE76494.ZNF490.HEK293 191 bp overlap
ZNF549 1 dataset
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 273 bp overlap
ZNF768 1 dataset
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap
ZSCAN30 1 dataset
ChIP HEK293 ENCSR768VNZ.ZSCAN30.HEK293 174 bp overlap
Zic1::Zic2 2 datasets
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Motif ES_0h ES_0h-Zic1Zic2_MA1628.2 7 bp overlap
Zic3 2 datasets
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
Motif ES_0h ES_0h-Zic3_MA0697.3 7 bp overlap
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