This gene belongs to the subfamily of ubiquitously expressed heterogeneous nuclear ribonucleoproteins (hnRNPs). The hnRNPs are RNA binding proteins that complex with heterogeneous nuclear RNA (hnRNA). These proteins are associated with pre-mRNAs in the nucleus and regulate alternative splicing, polyadenylation, and other aspects of mRNA metabolism and transport. While all of the hnRNPs are present in the nucleus, some seem to shuttle between the nucleus and the cytoplasm. The hnRNP proteins have distinct nucleic acid binding properties. The protein encoded by this gene has three repeats of quasi-RRM domains that bind to RNAs which have guanosine-rich sequences. This protein is very similar to the family member hnRPH. Multiple alternatively spliced variants, encoding the same protein, have been identified. [provided by RefSeq, Jul 2008]
Transcription factors with Perturb-seq knockdown data for HNRNPF. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = HNRNPF upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of HNRNPF, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr10:43,104,555–43,106,082 | 303.6 kb | Distal (>10kb) Multiome | 582 | |
| chr10:43,137,532–43,139,055 | 270.7 kb | Distal (>10kb) Multiome | 754 | |
| chr10:43,202,016–43,204,485 | 206.3 kb | Distal (>10kb) Multiome | 505 | |
| chr10:43,204,643–43,205,459 | 204.0 kb | Distal (>10kb) Multiome | 272 | |
| chr10:43,228,465–43,230,305 | 179.4 kb | Distal (>10kb) Multiome | 290 | |
| chr10:43,265,915–43,267,309 | 142.3 kb | Distal (>10kb) Multiome | 244 | |
| chr10:43,322,425–43,323,518 | 86.2 kb | Distal (>10kb) Multiome | 215 | |
| chr10:43,361,820–43,362,935 | 46.8 kb | Distal (>10kb) Multiome | 416 | |
| chr10:43,389,987–43,390,371 | 6.4 kb | Proximal (<10kb) | 92 | |
| chr10:43,390,814–43,391,022 | 5.8 kb | Proximal (<10kb) | 87 | |
| chr10:43,395,694–43,397,607 | 13.0 kb | Distal (>10kb) Multiome | 1120 | |
| chr10:43,401,712–43,401,985 | 4.9 kb | Proximal (<10kb) | 112 | |
| chr10:43,406,404–43,406,850 | 9.6 kb | Proximal (<10kb) | 156 | |
| chr10:43,407,131–43,410,086 | 10 bp | At TSS Multiome | 1109 | |
| chr10:43,420,185–43,421,230 | 11.5 kb | Distal (>10kb) Multiome | 1071 | |
| chr10:43,436,316–43,437,609 | 27.8 kb | Distal (>10kb) Multiome | 970 | |
| chr10:43,455,021–43,456,361 | 46.6 kb | Distal (>10kb) Multiome | 973 | |
| chr10:43,573,680–43,574,942 | 165.3 kb | Distal (>10kb) Multiome | 675 | |
| chr10:43,606,127–43,607,204 | 197.3 kb | Distal (>10kb) Multiome | 620 | |
| chr10:43,648,129–43,649,499 | 239.7 kb | Distal (>10kb) Multiome | 698 | |
| chr10:43,689,359–43,690,800 | 281.1 kb | Distal (>10kb) Multiome | 520 |
Genomic view of the HNRNPF locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.