chr1 : 18,649,792 18,650,569
777 bp 127 TFs 2 linked genes
This 777 bp open chromatin element is linked to PAX7 and ALDH4A1 and is bound by 127 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
PAX7 18.7 kb Distal Multiome
ALDH4A1 252.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:18,644,792 – 18,655,569
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
127 transcription factors
Source
Cell type
ARNT 1 dataset
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 135 bp overlap
BACH1 2 datasets
ChIP H1 ENCFF282VDB 212 bp overlap
ChIP WA01 ENCSR000EBQ.BACH1.WA01 206 bp overlap
BARX2 1 dataset
Motif DE_72h DE_72h-BARX2_MA1471.2 9 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 349 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 261 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 323 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 249 bp overlap
BRD4 3 datasets
ChIP HT29 GSE73319.BRD4.HT29 731 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 141 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 242 bp overlap
Bcl11B 1 dataset
Motif DE_72h DE_72h-Bcl11B_MA1989.2 9 bp overlap
CBFB 1 dataset
ChIP SaOS-2 GSE76937.CBFB.SaOS-2 111 bp overlap
CHD4 1 dataset
ChIP RH5 GSE155861.CHD4.RH5 217 bp overlap
CTBP1 1 dataset
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 242 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 173 bp overlap
CTCF 6 datasets
ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 98 bp overlap
ChIP H9 ENCFF152GTF 375 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 133 bp overlap
ChIP endodermal cell ENCFF471YCZ 373 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 252 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 269 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 224 bp overlap
EMSY 1 dataset
ChIP K562 ENCFF511ZZZ 266 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 245 bp overlap
EP300 2 datasets
ChIP WA01 ENCSR000BKK.EP300.WA01 154 bp overlap
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 339 bp overlap
ESR1 1 dataset
ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 124 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 225 bp overlap
ETV6 2 datasets
ChIP WTC11 ENCFF812SCD 292 bp overlap
ChIP WTC11 ENCFF812SCD 437 bp overlap
EZH2 11 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 777 bp overlap
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 282 bp overlap
ChIP GM23338 ENCFF613YON 385 bp overlap
ChIP GM23338 ENCSR045YHA.EZH2.GM23338 604 bp overlap
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 603 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 695 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 219 bp overlap
ChIP hepatocyte ENCSR384LYW.EZH2.hepatocyte 443 bp overlap
ChIP hepatocyte ENCSR384LYW.EZH2.hepatocyte 241 bp overlap
ChIP neural progenitor cell ENCFF018MKA 92 bp overlap
ChIP neural_progenitor ENCSR069DPL.EZH2.neural_progenitor 530 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 606 bp overlap
ChIP DE DE-FOXA2-2 532 bp overlap
FOXD3 1 dataset
Motif DE_72h DE_72h-FOXD3_MA0041.3 14 bp overlap
GATA1 1 dataset
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 183 bp overlap
GATA1::TAL1 2 datasets
Motif DE_72h DE_72h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_72h DE_72h-GATA1TAL1_MA0140.3 17 bp overlap
GATA2 2 datasets
Motif DE_72h DE_72h-GATA2_MA0036.4 7 bp overlap
Motif DE_72h DE_72h-GATA2_MA0036.4 7 bp overlap
GATA3 1 dataset
ChIP Kelly GSE65664.GATA3.Kelly 161 bp overlap
GATA4 7 datasets
ChIP DE DE-GATA4-1 553 bp overlap
ChIP DE DE-GATA4-2 769 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 274 bp overlap
ChIP foregut GSE117136.GATA4.foregut 528 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 272 bp overlap
GATA5 1 dataset
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
GATA6 14 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 158 bp overlap
ChIP DE DE-GATA6-1 713 bp overlap
ChIP DE DE-GATA6-2 777 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 777 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 777 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 777 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 743 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 777 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 777 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 740 bp overlap
ChIP foregut GSE117136.GATA6.foregut 556 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 428 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 166 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 263 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 303 bp overlap
Gata3 2 datasets
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
Gfi1B 2 datasets
Motif DE_72h DE_72h-Gfi1B_MA0483.2 10 bp overlap
Motif DE_72h DE_72h-Gfi1B_MA0483.2 10 bp overlap
Gli1 1 dataset
Motif DE_72h DE_72h-Gli1_MA1990.2 10 bp overlap
Gli2 1 dataset
Motif DE_72h DE_72h-Gli2_MA0734.4 9 bp overlap
HDAC2 1 dataset
ChIP H1 ENCFF353UJQ 255 bp overlap
HNF1A 1 dataset
Motif DE_72h DE_72h-HNF1A_MA0046.3 13 bp overlap
HNF1B 1 dataset
Motif DE_72h DE_72h-HNF1B_MA0153.2 13 bp overlap
HSF1 1 dataset
Motif DE_72h DE_72h-HSF1_MA0486.2 13 bp overlap
HSF2 1 dataset
Motif DE_72h DE_72h-HSF2_MA0770.1 13 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 396 bp overlap
JARID2 6 datasets
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 261 bp overlap
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 321 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 368 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 283 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 269 bp overlap
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 357 bp overlap
JUN 4 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 284 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 544 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 306 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 321 bp overlap
KDM1A 4 datasets
ChIP K-562 ENCSR908CMW.KDM1A.K-562 157 bp overlap
ChIP K-562 GSE117944.KDM1A.K-562 191 bp overlap
ChIP K562 ENCFF128TYE 259 bp overlap
ChIP K562 ENCFF934ZRG 189 bp overlap
LHX6 1 dataset
Motif DE_72h DE_72h-LHX6_MA0658.2 8 bp overlap
LMO2 1 dataset
ChIP TSU-1621MT GSE60477.LMO2.TSU-1621MT 176 bp overlap
MAFG 1 dataset
ChIP K-562 ENCSR818DQV.MAFG.K-562 219 bp overlap
MAFK 2 datasets
ChIP H1 ENCFF854XWE 196 bp overlap
ChIP WA01 ENCSR000EBS.MAFK.WA01 164 bp overlap
MED1 2 datasets
ChIP hMSC-TERT4_D14 GSE104537.MED1.hMSC-TERT4_D14 130 bp overlap
ChIP hMSC-TERT4_adipocyte-D7 GSE113253.MED1.hMSC-TERT4_adipocyte-D7 67 bp overlap
MED26 1 dataset
ChIP HEK293T GSE121024.MED26.HEK293T 218 bp overlap
MEIS1 1 dataset
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
MYB 1 dataset
ChIP MOLT-3 GSE59657.MYB.MOLT-3 164 bp overlap
Msgn1 1 dataset
Motif DE_72h DE_72h-Msgn1_MA1524.3 10 bp overlap
NANOG 7 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 414 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 140 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 131 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 322 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 159 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 198 bp overlap
ChIP hESC GSE18292.NANOG.hESC 62 bp overlap
NFATC3 1 dataset
Motif DE_72h DE_72h-NFATC3_MA0625.3 6 bp overlap
NFATC4 1 dataset
Motif DE_72h DE_72h-NFATC4_MA1525.3 9 bp overlap
NFE2 4 datasets
ChIP K-562 ENCSR552YGL.NFE2.K-562 203 bp overlap
ChIP K-562 ENCSR000FCC.NFE2.K-562 144 bp overlap
ChIP K562 ENCFF047YKA 152 bp overlap
ChIP K562 ENCFF163BSI 193 bp overlap
NFE2L1 1 dataset
ChIP WTC11 ENCFF644BPU 251 bp overlap
Nfat5 1 dataset
Motif DE_72h DE_72h-Nfat5_MA0606.3 8 bp overlap
Nfatc1 1 dataset
Motif DE_72h DE_72h-Nfatc1_MA0624.3 6 bp overlap
ONECUT3 1 dataset
Motif DE_72h DE_72h-ONECUT3_MA0757.2 12 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 261 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 63 bp overlap
POU5F1 3 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 419 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 603 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 204 bp overlap
PRDM1 1 dataset
Motif DE_72h DE_72h-PRDM1_MA0508.4 7 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 217 bp overlap
RAD21 2 datasets
ChIP H1 ENCFF698EWO 172 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 149 bp overlap
RARA 1 dataset
ChIP hiPSC_D2 GSE132532.RARA.hiPSC_D2 222 bp overlap
RBPJ 2 datasets
Motif DE_72h DE_72h-RBPJ_MA1116.2 6 bp overlap
Motif DE_72h DE_72h-RBPJ_MA1116.2 6 bp overlap
RNF2 4 datasets
ChIP HUES-64 GSE104059.RNF2.HUES-64 288 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 283 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 259 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 154 bp overlap
RUNX2 2 datasets
Motif DE_72h DE_72h-RUNX2_MA0511.2 9 bp overlap
ChIP SaOS-2 GSE76937.RUNX2.SaOS-2 115 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 765 bp overlap
Runx1 1 dataset
Motif DE_72h DE_72h-Runx1_MA0002.3 9 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 170 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 608 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 650 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 587 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 428 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 515 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 611 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 411 bp overlap
SMAD3 3 datasets
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 190 bp overlap
ChIP HCC1954 GSE104760.SMAD3.HCC1954 178 bp overlap
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 186 bp overlap
SMARCA4 1 dataset
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 661 bp overlap
SMARCC1 2 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 201 bp overlap
ChIP Aska-SS_shSSX GSE108025.SMARCC1.Aska-SS_shSSX 349 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 458 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 247 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 145 bp overlap
SP5 1 dataset
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
SPIB 1 dataset
Motif DE_72h DE_72h-SPIB_MA0081.3 13 bp overlap
SREBF1 2 datasets
Motif DE_72h DE_72h-SREBF1_MA0829.3 10 bp overlap
Motif DE_72h DE_72h-SREBF1_MA0829.3 10 bp overlap
SS18 1 dataset
ChIP Aska-SS GSE108025.SS18.Aska-SS 377 bp overlap
SS18-SSX 2 datasets
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 363 bp overlap
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 292 bp overlap
STAT3 1 dataset
ChIP MDA-MB-157_EtOH GSE85579.STAT3.MDA-MB-157_EtOH 122 bp overlap
SUZ12 3 datasets
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 289 bp overlap
ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 342 bp overlap
ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 144 bp overlap
Spi1 1 dataset
Motif DE_72h DE_72h-Spi1_MA0080.7 13 bp overlap
Stat5b 1 dataset
Motif DE_72h DE_72h-Stat5b_MA1625.2 9 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 192 bp overlap
TAL1 1 dataset
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 323 bp overlap
TBX21 1 dataset
Motif DE_72h DE_72h-TBX21_MA0690.3 10 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 144 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 315 bp overlap
TEAD4 3 datasets
ChIP H1 ENCFF778PAX 144 bp overlap
ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 55 bp overlap
ChIP SNU-216 GSE44416.TEAD4.SNU-216 114 bp overlap
TFAP2A 2 datasets
Motif DE_72h DE_72h-TFAP2A_MA0003.5 9 bp overlap
Motif DE_72h DE_72h-TFAP2A_MA0810.2 11 bp overlap
TFAP2B 2 datasets
Motif DE_72h DE_72h-TFAP2B_MA0811.2 11 bp overlap
Motif DE_72h DE_72h-TFAP2B_MA0812.2 9 bp overlap
TFAP2C 6 datasets
Motif DE_72h DE_72h-TFAP2C_MA0524.3 11 bp overlap
Motif DE_72h DE_72h-TFAP2C_MA0814.3 9 bp overlap
ChIP HCC1954 GSE126897.TFAP2C.HCC1954 275 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 538 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 148 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 235 bp overlap
TFAP2E 1 dataset
Motif DE_72h DE_72h-TFAP2E_MA1569.2 9 bp overlap
TP53 1 dataset
ChIP SaOS-2 GSE15780.TP53.SaOS-2 142 bp overlap
TRPS1 3 datasets
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
ChIP MCF-7 GSE133072.TRPS1.MCF-7 193 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 156 bp overlap
ZBED5 1 dataset
ChIP HepG2 ENCFF991QZL 317 bp overlap
ZBTB26 1 dataset
Motif DE_72h DE_72h-ZBTB26_MA1579.2 8 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 352 bp overlap
ZNF148 1 dataset
Motif DE_72h DE_72h-ZNF148_MA1653.2 10 bp overlap
ZNF189 1 dataset
Motif DE_72h DE_72h-ZNF189_MA1725.2 9 bp overlap
ZNF281 1 dataset
Motif DE_72h DE_72h-ZNF281_MA1630.3 10 bp overlap
ZNF282 1 dataset
Motif DE_72h DE_72h-ZNF282_MA1154.2 15 bp overlap
ZNF341 3 datasets
ChIP HEK293 ENCFF944VMC 444 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 561 bp overlap
ChIP HEK293 GSE76494.ZNF341.HEK293 371 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 182 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 204 bp overlap
ZNF530 1 dataset
Motif DE_72h DE_72h-ZNF530_MA1981.2 14 bp overlap
ZNF701 1 dataset
Motif DE_72h DE_72h-ZNF701_MA1987.2 17 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 566 bp overlap
ZSCAN16 1 dataset
Motif DE_72h DE_72h-ZSCAN16_MA2100.1 18 bp overlap
Zfp809 1 dataset
Motif DE_72h DE_72h-Zfp809_MA2125.1 9 bp overlap