chr9 : 86,903,240 86,903,714
474 bp 128 TFs 1 linked gene
This 474 bp open chromatin element is linked to LINC02893 and is bound by 128 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC02893 138.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:86,898,240 – 86,908,714
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
128 transcription factors
Source
Cell type
AR 1 dataset
ChIP MCF-7 GSE48930.AR.MCF-7 151 bp overlap
ARRB1 1 dataset
ChIP prostate GSE55615.ARRB1.prostate 100 bp overlap
ASH2L 1 dataset
ChIP H1 ENCFF399KAM 396 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 212 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 179 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 474 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 110 bp overlap
BRD4 11 datasets
ChIP Hs-352-Sk_PAX3-FOXO1-vector GSE83725.BRD4.Hs-352-Sk_PAX3-FOXO1-vector 51 bp overlap
ChIP Hs-352-Sk_PAX3-FOXO1-vector GSE83725.BRD4.Hs-352-Sk_PAX3-FOXO1-vector 181 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 299 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 62 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 204 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 385 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 163 bp overlap
ChIP hESC GSE33281.BRD4.hESC 139 bp overlap
ChIP hESC GSE33281.BRD4.hESC 57 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 378 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 355 bp overlap
CHD4 1 dataset
ChIP RH5 GSE155861.CHD4.RH5 313 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 369 bp overlap
CTCF 3 datasets
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 68 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 204 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 271 bp overlap
EGR1 2 datasets
ChIP WA01 ENCSR000BJA.EGR1.WA01 186 bp overlap
ChIP WA01 ENCSR000BJA.EGR1.WA01 137 bp overlap
EHF 1 dataset
Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap
ELF1 1 dataset
Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap
ESR1 1 dataset
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 362 bp overlap
ETS1 1 dataset
ChIP SCC-25 GSE109884.ETS1.SCC-25 239 bp overlap
ETV1 1 dataset
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
EWSR1-FLI1 2 datasets
Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif ES_0h ES_0h-EWSR1-FLI1_MA0149.1 18 bp overlap
EZH2 6 datasets
ChIP GM23338 ENCSR045YHA.EZH2.GM23338 233 bp overlap
ChIP H1 ENCFF232NZA 170 bp overlap
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 368 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 187 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 474 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 392 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
FLI1 1 dataset
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 166 bp overlap
FOXO1-PAX3 2 datasets
ChIP RH4_DMSO-6H GSE116344.FOXO1-PAX3.RH4_DMSO-6H 76 bp overlap
ChIP RH4_Entinostat-6H GSE116344.FOXO1-PAX3.RH4_Entinostat-6H 67 bp overlap
GFI1 1 dataset
Motif DE_12h DE_12h-GFI1_MA0038.3 11 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 321 bp overlap
Gfi1B 1 dataset
Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap
HDAC2 5 datasets
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 338 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 138 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 98 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 108 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 274 bp overlap
HDAC3 2 datasets
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 85 bp overlap
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 179 bp overlap
Hic1 1 dataset
Motif ES_0h ES_0h-Hic1_MA0739.2 8 bp overlap
IKZF2 2 datasets
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 1 dataset
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 474 bp overlap
JUN 3 datasets
ChIP ESC S34-ESC-d0-JUN-exp2 106 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 347 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 281 bp overlap
KDM4A 4 datasets
ChIP H1 ENCFF078LED 474 bp overlap
ChIP H1 ENCFF078LED 288 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 394 bp overlap
ChIP hiPSC_IIA11 GSE106870.KDM4A.hiPSC_IIA11 51 bp overlap
KLF1 1 dataset
Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap
KLF10 1 dataset
Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap
KLF11 1 dataset
Motif DE_12h DE_12h-KLF11_MA1512.2 10 bp overlap
KLF12 1 dataset
Motif DE_12h DE_12h-KLF12_MA0742.2 9 bp overlap
KLF14 1 dataset
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
KLF15 1 dataset
Motif DE_12h DE_12h-KLF15_MA1513.2 8 bp overlap
KLF16 1 dataset
Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap
KLF2 1 dataset
Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap
KLF4 1 dataset
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
KLF5 1 dataset
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
KLF7 1 dataset
Motif DE_12h DE_12h-KLF7_MA1959.2 8 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 56 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 278 bp overlap
ChIP WTC11 ENCFF223QFY 407 bp overlap
MAZ 2 datasets
Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap
Motif ES_0h ES_0h-MAZ_MA1522.2 8 bp overlap
MED1 2 datasets
ChIP RH4 GSE83726.MED1.RH4 183 bp overlap
ChIP dopaminergic-neuron_Dopamine_neurons GSE93905.MED1.dopaminergic-neuron_Dopamine_neurons 139 bp overlap
MXI1 2 datasets
ChIP H1 ENCFF963FZS 218 bp overlap
ChIP WA01 ENCSR000EBR.MXI1.WA01 127 bp overlap
MYCN 1 dataset
ChIP RH4 GSE83726.MYCN.RH4 300 bp overlap
MYOD1 7 datasets
ChIP RD GSE137168.MYOD1.RD 222 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 200 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 282 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 64 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 191 bp overlap
ChIP myoblast GSE50413.MYOD1.myoblast 160 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 159 bp overlap
MYOG 3 datasets
ChIP RH4 GSE83726.MYOG.RH4 70 bp overlap
ChIP RH4_DMSO-6H GSE116344.MYOG.RH4_DMSO-6H 223 bp overlap
ChIP RH4_Entinostat-6H GSE116344.MYOG.RH4_Entinostat-6H 220 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 432 bp overlap
NIPBL 1 dataset
ChIP WA09 GSE105028.NIPBL.WA09 254 bp overlap
NR2F1 1 dataset
Motif DE_12h DE_12h-NR2F1_MA1537.2 13 bp overlap
OLIG2 1 dataset
ChIP brain-prefrontal-cortex_2017014 GSE129039.OLIG2.brain-prefrontal-cortex_2017014 203 bp overlap
PATZ1 2 datasets
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
PAX3-FOXO1 4 datasets
ChIP Hs-352-Sk_PAX3-FOXO1-vector GSE83725.PAX3-FOXO1.Hs-352-Sk_PAX3-FOXO1-vector 52 bp overlap
ChIP RH3 GSE83726.PAX3-FOXO1.RH3 71 bp overlap
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 136 bp overlap
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 130 bp overlap
PGR 1 dataset
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 395 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 126 bp overlap
POU5F1 4 datasets
ChIP BG03 GSE21614.POU5F1.BG03 89 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 464 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 422 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 271 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 474 bp overlap
PPARD 1 dataset
Motif DE_12h DE_12h-PPARD_MA1550.2 14 bp overlap
PRDM9 2 datasets
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap
Pparg::Rxra 2 datasets
Motif DE_12h DE_12h-PpargRxra_MA0065.3 13 bp overlap
Motif DE_12h DE_12h-PpargRxra_MA0065.3 13 bp overlap
RAD21 1 dataset
ChIP RH4 GSE83726.RAD21.RH4 474 bp overlap
RARA 3 datasets
Motif DE_12h DE_12h-RARA_MA0729.1 18 bp overlap
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 51 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 339 bp overlap
RBBP4 2 datasets
ChIP RH5 GSE155861.RBBP4.RH5 237 bp overlap
ChIP SCMC GSE155861.RBBP4.SCMC 474 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 229 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 474 bp overlap
RELA 1 dataset
ChIP 786-O GSE86092.RELA.786-O 59 bp overlap
RNF2 2 datasets
ChIP WA01 GSE104690.RNF2.WA01 429 bp overlap
ChIP WA01 ENCSR784VUY.RNF2.WA01 454 bp overlap
RUNX1 1 dataset
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 106 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 474 bp overlap
Rarb 1 dataset
Motif DE_12h DE_12h-Rarb_MA0857.1 16 bp overlap
Rarg 1 dataset
Motif DE_12h DE_12h-Rarg_MA0859.2 15 bp overlap
Rxra 1 dataset
Motif DE_12h DE_12h-Rxra_MA0512.2 14 bp overlap
SAP30 2 datasets
ChIP WA01 ENCSR000ATR.SAP30.WA01 193 bp overlap
ChIP WA01 ENCSR000ATR.SAP30.WA01 204 bp overlap
SIN3A 3 datasets
ChIP H1 ENCFF042ZSL 371 bp overlap
ChIP H1 ENCFF042ZSL 417 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 356 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 288 bp overlap
ChIP HEK GSE73865.SIX2.HEK 94 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 201 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 99 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 373 bp overlap
SMARCA4 3 datasets
ChIP NSC GSE125033.SMARCA4.NSC 249 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 54 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 155 bp overlap
SNAI2 1 dataset
ChIP RD_shSNAI2 GSE137168.SNAI2.RD_shSNAI2 256 bp overlap
SOX2 3 datasets
ChIP HNSC GSE69479.SOX2.HNSC 411 bp overlap
ChIP hiPSC GSE67282.SOX2.hiPSC 103 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 347 bp overlap
SOX8 1 dataset
ChIP RH4 GSE116344.SOX8.RH4 232 bp overlap
SP1 2 datasets
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 246 bp overlap
SP2 1 dataset
Motif DE_12h DE_12h-SP2_MA0516.3 9 bp overlap
SP3 1 dataset
Motif DE_12h DE_12h-SP3_MA0746.3 11 bp overlap
SP4 2 datasets
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
SP5 4 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SP8 1 dataset
Motif DE_12h DE_12h-SP8_MA0747.2 11 bp overlap
SP9 1 dataset
Motif DE_12h DE_12h-SP9_MA1564.2 10 bp overlap
STAT1 2 datasets
ChIP CD14_LPS GSE43036.STAT1.CD14_LPS 148 bp overlap
Motif DE_12h DE_12h-STAT1_MA0137.4 9 bp overlap
STAT3 4 datasets
Motif DE_12h DE_12h-STAT3_MA0144.3 9 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 210 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 401 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 209 bp overlap
SUZ12 3 datasets
ChIP H1 ENCFF881NFR 474 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 204 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 127 bp overlap
Spi1 1 dataset
Motif ES_0h ES_0h-Spi1_MA0080.7 13 bp overlap
Stat4 1 dataset
Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap
Stat5b 1 dataset
Motif DE_12h DE_12h-Stat5b_MA1625.2 9 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 107 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 98 bp overlap
TFAP2A 1 dataset
Motif DE_12h DE_12h-TFAP2A_MA0810.2 11 bp overlap
THRB 1 dataset
Motif DE_12h DE_12h-THRB_MA1574.2 13 bp overlap
TP53 2 datasets
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 219 bp overlap
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 320 bp overlap
YY1 2 datasets
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 276 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 474 bp overlap
ZBED4 1 dataset
Motif DE_12h DE_12h-ZBED4_MA2328.1 10 bp overlap
ZBTB11 1 dataset
Motif DE_12h DE_12h-ZBTB11_MA2329.1 9 bp overlap
ZBTB7A 2 datasets
Motif DE_12h DE_12h-ZBTB7A_MA0750.3 9 bp overlap
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 177 bp overlap
ZFP14 1 dataset
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
ZNF148 3 datasets
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
Motif ES_0h ES_0h-ZNF148_MA1653.2 10 bp overlap
ChIP K-562 GSE121133.ZNF148.K-562 123 bp overlap
ZNF257 2 datasets
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
Motif ES_0h ES_0h-ZNF257_MA1710.2 10 bp overlap
ZNF263 2 datasets
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
ZNF281 3 datasets
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap
ZNF343 1 dataset
Motif DE_12h DE_12h-ZNF343_MA1711.2 16 bp overlap
ZNF410 1 dataset
Motif DE_12h DE_12h-ZNF410_MA0752.2 16 bp overlap
ZNF460 1 dataset
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
ZNF524 1 dataset
Motif ES_0h ES_0h-ZNF524_MA2096.1 9 bp overlap
ZNF530 1 dataset
Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap
ZNF610 1 dataset
Motif DE_12h DE_12h-ZNF610_MA1713.2 10 bp overlap
Zfp809 2 datasets
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap