chr9 : 744,936 745,459
523 bp 120 TFs 0 linked genes
This 523 bp open chromatin element has no linked target genes and is bound by 120 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:739,936 – 750,459
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
120 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 129 bp overlap
ARID3A 1 dataset
ChIP HepG2 ENCFF341DES 219 bp overlap
ARID5B 1 dataset
ChIP HepG2 ENCFF964FWK 214 bp overlap
ASCL1 2 datasets
ChIP G523NS_Dox GSE87618.ASCL1.G523NS_Dox 231 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 215 bp overlap
ATF3 4 datasets
ChIP liver ENCFF375GID 242 bp overlap
ChIP liver ENCFF867MFZ 216 bp overlap
ChIP liver ENCSR480LIS.ATF3.liver 251 bp overlap
ChIP liver ENCSR205FOW.ATF3.liver 154 bp overlap
BRD4 4 datasets
ChIP RH4 GSE83726.BRD4.RH4 249 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 159 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 149 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 108 bp overlap
CDK8 1 dataset
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 106 bp overlap
CEBPA 2 datasets
ChIP HepG2 ENCFF175DFS 128 bp overlap
ChIP liver ERP002306.CEBPA.liver 183 bp overlap
CEBPB 3 datasets
ChIP Hep-G2 ENCSR000EEX.CEBPB.Hep-G2 88 bp overlap
ChIP HepG2 ENCFF074JWB 59 bp overlap
ChIP HepG2 ENCFF536NTI 89 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 232 bp overlap
CLOCK 1 dataset
ChIP U2OS GSE44236.CLOCK.U2OS 116 bp overlap
CTCF 2 datasets
ChIP RH4 GSE83726.CTCF.RH4 245 bp overlap
ChIP gastrocnemius-medialis ENCSR594NSU.CTCF.gastrocnemius-medialis 133 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 86 bp overlap
DRAP1 1 dataset
ChIP Hep-G2 ENCSR765MKZ.DRAP1.Hep-G2 103 bp overlap
EBF1 1 dataset
ChIP ASC GSE54889.EBF1.ASC 107 bp overlap
EGR1 3 datasets
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 302 bp overlap
ChIP liver ENCFF130MBW 236 bp overlap
ChIP liver ENCSR736BUG.EGR1.liver 190 bp overlap
ELF1 1 dataset
ChIP Hep-G2 ENCSR321VGW.ELF1.Hep-G2 125 bp overlap
EP300 4 datasets
ChIP Hep-G2 ENCSR000BLW.EP300.Hep-G2 93 bp overlap
ChIP sigmoid colon ENCFF524QSR 86 bp overlap
ChIP sigmoid colon ENCFF524QSR 271 bp overlap
ChIP tibial nerve ENCFF346AYA 198 bp overlap
ETS1 1 dataset
ChIP Hep-G2 ENCSR681WHQ.ETS1.Hep-G2 124 bp overlap
ETV1 1 dataset
ChIP GIST-T1 GSE106624.ETV1.GIST-T1 128 bp overlap
EZH2 2 datasets
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 308 bp overlap
ChIP RH30_Trametinib GSE85169.EZH2.RH30_Trametinib 153 bp overlap
FOXA1 7 datasets
ChIP liver ENCFF537QZV 359 bp overlap
ChIP liver ENCFF537QZV 383 bp overlap
ChIP liver ENCFF749ERP 302 bp overlap
ChIP liver ERP002306.FOXA1.liver 339 bp overlap
ChIP liver ENCSR735KEY.FOXA1.liver 236 bp overlap
ChIP liver ENCSR324RCI.FOXA1.liver 214 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 375 bp overlap
FOXA2 7 datasets
ChIP DE DE-FOXA2-1 523 bp overlap
ChIP DE DE-FOXA2-2 519 bp overlap
ChIP liver ENCFF877SFI 271 bp overlap
ChIP liver ENCFF888VJF 345 bp overlap
ChIP liver ENCSR310NYI.FOXA2.liver 227 bp overlap
ChIP liver ENCSR080XEY.FOXA2.liver 377 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 306 bp overlap
FOXP4 1 dataset
ChIP Hep-G2 ENCSR232LLP.FOXP4.Hep-G2 156 bp overlap
GABPA 2 datasets
ChIP liver ENCFF500III 320 bp overlap
ChIP liver ENCSR038GMB.GABPA.liver 169 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 270 bp overlap
ChIP DE DE-GATA4-2 340 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 254 bp overlap
ChIP DE DE-GATA6-2 334 bp overlap
GTF2F1 1 dataset
ChIP Hep-G2 GSE120104.GTF2F1.Hep-G2 103 bp overlap
Gmeb1 1 dataset
Motif DE_72h DE_72h-Gmeb1_MA0615.2 6 bp overlap
HDAC2 3 datasets
ChIP Hep-G2 ENCSR000BMC.HDAC2.Hep-G2 68 bp overlap
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 263 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 321 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 290 bp overlap
HNF1B 2 datasets
ChIP Hep-G2 ENCSR127XTZ.HNF1B.Hep-G2 154 bp overlap
ChIP HepG2 ENCFF928THX 184 bp overlap
HNF4A 7 datasets
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 173 bp overlap
ChIP Hep-G2 ENCSR000BLF.HNF4A.Hep-G2 105 bp overlap
ChIP Hep-G2 ENCSR000EEU.HNF4A.Hep-G2 125 bp overlap
ChIP HepG2 ENCFF146SSF 196 bp overlap
ChIP liver ENCFF354NRH 276 bp overlap
ChIP liver ENCFF449HPV 262 bp overlap
ChIP liver ERP002306.HNF4A.liver 296 bp overlap
HNF4G 4 datasets
ChIP Hep-G2 ENCSR000BNJ.HNF4G.Hep-G2 142 bp overlap
ChIP HepG2 ENCFF323ATZ 134 bp overlap
ChIP liver ENCFF170YNZ 180 bp overlap
ChIP liver ENCSR297GII.HNF4G.liver 225 bp overlap
HOXA3 1 dataset
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 163 bp overlap
JUND 4 datasets
ChIP liver ENCFF007WWT 281 bp overlap
ChIP liver ENCFF557PGE 308 bp overlap
ChIP liver ENCSR837GTK.JUND.liver 270 bp overlap
ChIP liver ENCSR196HGZ.JUND.liver 252 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 177 bp overlap
KDM5B 1 dataset
ChIP Hep-G2 ENCSR227MRE.KDM5B.Hep-G2 164 bp overlap
KMT2A 1 dataset
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 140 bp overlap
L3MBTL4 1 dataset
ChIP Hep-G2 GSE97661.L3MBTL4.Hep-G2 138 bp overlap
MAX 5 datasets
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 139 bp overlap
ChIP liver ENCFF092GVW 123 bp overlap
ChIP liver ENCFF584QGB 242 bp overlap
ChIP liver ENCSR521IID.MAX.liver 230 bp overlap
ChIP liver ENCSR847DIT.MAX.liver 199 bp overlap
MED1 2 datasets
ChIP Hep-G2 ENCSR959XNY.MED1.Hep-G2 161 bp overlap
ChIP RH4 GSE83726.MED1.RH4 246 bp overlap
MED12 1 dataset
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 56 bp overlap
MNX1 1 dataset
ChIP Hep-G2 ENCSR108MKR.MNX1.Hep-G2 120 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 307 bp overlap
MXD4 1 dataset
ChIP Hep-G2 ENCSR441KFW.MXD4.Hep-G2 147 bp overlap
MYCN 1 dataset
ChIP RH4 GSE83726.MYCN.RH4 262 bp overlap
MYF5 1 dataset
ChIP Rh18 GSE84628.MYF5.Rh18 252 bp overlap
MYOD1 8 datasets
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 245 bp overlap
ChIP RD GSE137168.MYOD1.RD 244 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 250 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 523 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 314 bp overlap
ChIP SMS-CTR GSE137168.MYOD1.SMS-CTR 247 bp overlap
ChIP myoblast GSE50413.MYOD1.myoblast 239 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 214 bp overlap
MYOG 4 datasets
ChIP RH30_DMSO GSE85169.MYOG.RH30_DMSO 330 bp overlap
ChIP RH4 GSE83726.MYOG.RH4 400 bp overlap
ChIP RH4_DMSO-6H GSE116344.MYOG.RH4_DMSO-6H 295 bp overlap
ChIP RH4_Entinostat-6H GSE116344.MYOG.RH4_Entinostat-6H 260 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 208 bp overlap
NEUROG2 7 datasets
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 523 bp overlap
ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 523 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 328 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 109 bp overlap
ChIP MRC-5_N_02DPT GSE75910.NEUROG2.MRC-5_N_02DPT 309 bp overlap
ChIP MRC-5_N_05DPT GSE75910.NEUROG2.MRC-5_N_05DPT 319 bp overlap
ChIP MRC-5_N_1DPT GSE75910.NEUROG2.MRC-5_N_1DPT 307 bp overlap
NFIA 1 dataset
ChIP HepG2 ENCFF815HWK 102 bp overlap
NFIC 1 dataset
ChIP Hep-G2 GSE108514.NFIC.Hep-G2 135 bp overlap
NR2F2 5 datasets
ChIP liver ENCFF427MRU 234 bp overlap
ChIP liver ENCFF565JGD 296 bp overlap
ChIP liver ENCFF565JGD 491 bp overlap
ChIP liver ENCSR338MMB.NR2F2.liver 176 bp overlap
ChIP liver ENCSR168SMX.NR2F2.liver 245 bp overlap
NR2F6 1 dataset
ChIP Hep-G2 ENCSR518WPL.NR2F6.Hep-G2 146 bp overlap
NR5A1 2 datasets
ChIP Hep-G2 ENCSR310OZS.NR5A1.Hep-G2 169 bp overlap
ChIP HepG2 ENCFF970YZO 229 bp overlap
OLIG2 1 dataset
ChIP brain-prefrontal-cortex_2017011 GSE129039.OLIG2.brain-prefrontal-cortex_2017011 237 bp overlap
OSR1 1 dataset
Motif DE_72h DE_72h-OSR1_MA1542.2 8 bp overlap
OSR2 1 dataset
Motif DE_72h DE_72h-OSR2_MA1646.2 8 bp overlap
PAXIP1 2 datasets
ChIP HepG2 ENCFF526NOJ 288 bp overlap
ChIP HepG2 ENCFF526NOJ 489 bp overlap
PDX1 3 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 340 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 368 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 451 bp overlap
PGR 1 dataset
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 178 bp overlap
PHF5A 1 dataset
ChIP Hep-G2 ENCSR191TLD.PHF5A.Hep-G2 259 bp overlap
POLR2A 18 datasets
ChIP HepG2 ENCFF422YUC 226 bp overlap
ChIP HepG2 ENCFF718XAJ 337 bp overlap
ChIP body of pancreas ENCFF501FEC 339 bp overlap
ChIP esophagus muscularis mucosa ENCFF759BBR 151 bp overlap
ChIP esophagus muscularis mucosa ENCFF791ZXN 216 bp overlap
ChIP gastroesophageal sphincter ENCFF070PCA 178 bp overlap
ChIP sigmoid colon ENCFF101ILL 153 bp overlap
ChIP sigmoid colon ENCFF725QFT 227 bp overlap
ChIP sigmoid colon ENCFF748YVT 193 bp overlap
ChIP sigmoid colon ENCFF754JQR 223 bp overlap
ChIP stomach ENCFF278MYS 218 bp overlap
ChIP stomach ENCFF607ZPU 224 bp overlap
ChIP stomach ENCFF820WZN 125 bp overlap
ChIP transverse colon ENCFF607LKE 73 bp overlap
ChIP transverse colon ENCFF610RWV 162 bp overlap
ChIP transverse colon ENCFF840PXT 218 bp overlap
ChIP upper lobe of left lung ENCFF095BJW 244 bp overlap
ChIP upper lobe of left lung ENCFF199JUI 240 bp overlap
POLR2G 2 datasets
ChIP HepG2 ENCFF241AEG 296 bp overlap
ChIP HepG2 ENCFF508UTS 251 bp overlap
PPARG 1 dataset
ChIP Hep-G2 ENCSR130VQL.PPARG.Hep-G2 102 bp overlap
RAD21 2 datasets
ChIP RH4 GSE83726.RAD21.RH4 248 bp overlap
ChIP liver ENCFF485PAC 213 bp overlap
RBBP4 2 datasets
ChIP RH5 GSE155861.RBBP4.RH5 390 bp overlap
ChIP SCMC GSE155861.RBBP4.SCMC 523 bp overlap
RELA 5 datasets
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 184 bp overlap
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 255 bp overlap
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 148 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 119 bp overlap
ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 168 bp overlap
REST 4 datasets
ChIP liver ENCFF240FWT 322 bp overlap
ChIP liver ENCFF577AZT 307 bp overlap
ChIP liver ENCSR867WPH.REST.liver 244 bp overlap
ChIP liver ENCSR893QWP.REST.liver 85 bp overlap
RXRA 3 datasets
ChIP HepG2 ENCFF763IEA 300 bp overlap
ChIP liver ENCFF077DAP 254 bp overlap
ChIP liver ENCFF807CIA 278 bp overlap
SALL1 2 datasets
ChIP HepG2 ENCFF426MCK 262 bp overlap
ChIP HepG2 ENCFF426MCK 464 bp overlap
SAP130 1 dataset
ChIP HepG2 ENCFF892EHZ 259 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 322 bp overlap
SMAD3 1 dataset
ChIP Hep-G2 ENCSR005GZH.SMAD3.Hep-G2 124 bp overlap
SNAI2 3 datasets
ChIP SMS-CTR GSE137168.SNAI2.SMS-CTR 151 bp overlap
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 181 bp overlap
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 243 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 254 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 407 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 196 bp overlap
SOX4 1 dataset
ChIP MRC-5_1DPT GSE75910.SOX4.MRC-5_1DPT 232 bp overlap
SOX6 1 dataset
ChIP Hep-G2 ENCSR766TSU.SOX6.Hep-G2 208 bp overlap
SP1 2 datasets
ChIP liver ENCFF597LFJ 277 bp overlap
ChIP liver ENCFF769YSM 258 bp overlap
Stat2 1 dataset
Motif DE_72h DE_72h-Stat2_MA1623.2 10 bp overlap
TCF21 1 dataset
ChIP HCASMC GSE124011.TCF21.HCASMC 256 bp overlap
TCF4 2 datasets
ChIP CAL-1 GSE76147.TCF4.CAL-1 192 bp overlap
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 329 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 175 bp overlap
TFAP4 3 datasets
ChIP Hep-G2 ENCSR103SZL.TFAP4.Hep-G2 237 bp overlap
ChIP HepG2 ENCFF030SRU 263 bp overlap
ChIP HepG2 ENCFF932XOY 137 bp overlap
TP53 2 datasets
ChIP Calu-1_MUT8-COMB GSE128673.TP53.Calu-1_MUT8-COMB 195 bp overlap
ChIP SaOS-2 ERP002038.TP53.SaOS-2 82 bp overlap
U2AF1 2 datasets
ChIP Hep-G2 ENCSR868JLS.U2AF1.Hep-G2 114 bp overlap
ChIP Hep-G2 GSE120104.U2AF1.Hep-G2 191 bp overlap
YY1 5 datasets
ChIP Hep-G2 ENCSR000BNT.YY1.Hep-G2 112 bp overlap
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 268 bp overlap
ChIP liver ENCFF400MBC 109 bp overlap
ChIP liver ENCFF515BWJ 296 bp overlap
ChIP liver ENCSR994YLZ.YY1.liver 191 bp overlap
ZBED4 1 dataset
ChIP Hep-G2 ENCSR409PMR.ZBED4.Hep-G2 117 bp overlap
ZBTB33 2 datasets
ChIP liver ENCFF592BJA 276 bp overlap
ChIP liver ENCSR516HUP.ZBTB33.liver 166 bp overlap
ZEB1 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 179 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 131 bp overlap
ZIM3 1 dataset
Motif DE_72h DE_72h-ZIM3_MA1709.2 11 bp overlap
ZNF24 1 dataset
Motif DE_72h DE_72h-ZNF24_MA1124.1 13 bp overlap
ZNF331 1 dataset
ChIP HepG2 ENCFF842SZN 216 bp overlap
ZNF532 1 dataset
ChIP NMC24335 GSE96775.ZNF532.NMC24335 523 bp overlap
ZNF644 1 dataset
ChIP HepG2 ENCFF352VGJ 140 bp overlap
ZNF687 1 dataset
ChIP HepG2 ENCFF653WIX 217 bp overlap
Zfp335 1 dataset
Motif DE_72h DE_72h-Zfp335_MA2002.2 7 bp overlap