chr1 : 155,071,790 – 155,072,067
277 bp 109 TFs 3 linked genes
This 277 bp open chromatin element is linked to EFNA3, EFNA4-EFNA3, and EFNA4 and is bound by 109 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
EFNA3 6.8 kb Proximal Proximity
EFNA4-EFNA3 8.0 kb Proximal Proximity
EFNA4 8.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:155,066,790 – 155,077,067
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
109 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP MCF-7 GSE144036.AFF4.MCF-7 277 bp overlap
AGO1 2 datasets
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 277 bp overlap
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 277 bp overlap
ATF2 9 datasets
Motif DE_24h DE_24h-ATF2_MA1632.2 10 bp overlap
ChIP H1 ENCFF295GZO 277 bp overlap
ChIP HEK293 ENCFF194VKZ 277 bp overlap
ChIP HEK293 ENCSR217HTK.ATF2.HEK293 277 bp overlap
ChIP Hep-G2 ENCSR047BUZ.ATF2.Hep-G2 277 bp overlap
ChIP HepG2 ENCFF955VER 207 bp overlap
ChIP K-562 ENCSR869IUD.ATF2.K-562 277 bp overlap
ChIP K562 ENCFF139ZZG 273 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 277 bp overlap
ATF3 4 datasets
Motif DE_24h DE_24h-ATF3_MA0605.3 10 bp overlap
Motif DE_24h DE_24h-ATF3_MA0605.3 10 bp overlap
ChIP K-562 ENCSR028UIU.ATF3.K-562 277 bp overlap
ChIP K562 ENCFF604FPV 214 bp overlap
ATF7 5 datasets
Motif DE_24h DE_24h-ATF7_MA0834.2 10 bp overlap
Motif DE_24h DE_24h-ATF7_MA0834.2 10 bp overlap
ChIP Hep-G2 ENCSR545FXC.ATF7.Hep-G2 237 bp overlap
ChIP K-562 ENCSR972ZBV.ATF7.K-562 277 bp overlap
ChIP K562 ENCFF308SKS 277 bp overlap
BACH2 1 dataset
Motif DE_24h DE_24h-BACH2_MA1470.2 19 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 277 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 160 bp overlap
BRD4 3 datasets
ChIP CLL_patient3 GSE109411.BRD4.CLL_patient3 234 bp overlap
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD4.K-562_iBET-BD1-IFNG 190 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 245 bp overlap
CBFA2T2 1 dataset
ChIP NCCIT GSE71675.CBFA2T2.NCCIT 213 bp overlap
CEBPB 1 dataset
ChIP WA01 ENCSR000EBV.CEBPB.WA01 124 bp overlap
CHD2 2 datasets
ChIP H1 ENCFF991MKH 277 bp overlap
ChIP WA01 ENCSR000EBT.CHD2.WA01 193 bp overlap
CREB1 5 datasets
Motif DE_24h DE_24h-CREB1_MA0018.5 8 bp overlap
ChIP GM23338 ENCFF432ZEW 247 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 277 bp overlap
ChIP H1 ENCFF955PMP 155 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 257 bp overlap
CREB3L4 1 dataset
Motif DE_24h DE_24h-CREB3L4_MA1475.2 9 bp overlap
CREM 1 dataset
Motif DE_24h DE_24h-CREM_MA0609.3 10 bp overlap
CTBP1 1 dataset
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 231 bp overlap
CTCF 1 dataset
ChIP neural ENCSR822CEA.CTCF.neural 277 bp overlap
Creb5 2 datasets
Motif DE_24h DE_24h-Creb5_MA0840.2 10 bp overlap
Motif DE_24h DE_24h-Creb5_MA0840.2 10 bp overlap
EP300 2 datasets
ChIP neural ENCSR843ZUP.EP300.neural 229 bp overlap
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 197 bp overlap
ERG 1 dataset
ChIP SKNO-1 GSE23730.ERG.SKNO-1 201 bp overlap
ESR1 1 dataset
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 197 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 188 bp overlap
EZH2 2 datasets
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 162 bp overlap
ChIP hepatocyte ENCFF552DZB 273 bp overlap
FLI1 1 dataset
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 277 bp overlap
FOS 2 datasets
Motif DE_24h DE_24h-FOS_MA1951.2 13 bp overlap
Motif DE_24h DE_24h-FOS_MA1951.2 13 bp overlap
FOS::JUN 2 datasets
Motif DE_24h DE_24h-FOSJUN_MA1126.2 10 bp overlap
Motif DE_24h DE_24h-FOSJUN_MA1126.2 10 bp overlap
FOSB::JUN 2 datasets
Motif DE_24h DE_24h-FOSBJUN_MA1127.1 11 bp overlap
Motif DE_24h DE_24h-FOSBJUN_MA1127.1 11 bp overlap
FOSB::JUNB 2 datasets
Motif DE_24h DE_24h-FOSBJUNB_MA1136.1 10 bp overlap
Motif DE_24h DE_24h-FOSBJUNB_MA1136.1 10 bp overlap
FOSL1::JUN 2 datasets
Motif DE_24h DE_24h-FOSL1JUN_MA1129.1 10 bp overlap
Motif DE_24h DE_24h-FOSL1JUN_MA1129.1 10 bp overlap
FOSL1::JUND 1 dataset
Motif DE_24h DE_24h-FOSL1JUND_MA1143.2 9 bp overlap
FOSL2::JUN 2 datasets
Motif DE_24h DE_24h-FOSL2JUN_MA1131.2 10 bp overlap
Motif DE_24h DE_24h-FOSL2JUN_MA1131.2 10 bp overlap
FOSL2::JUNB 2 datasets
Motif DE_24h DE_24h-FOSL2JUNB_MA1139.2 10 bp overlap
Motif DE_24h DE_24h-FOSL2JUNB_MA1139.2 10 bp overlap
FOSL2::JUND 2 datasets
Motif DE_24h DE_24h-FOSL2JUND_MA1145.2 10 bp overlap
Motif DE_24h DE_24h-FOSL2JUND_MA1145.2 10 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 67 bp overlap
GATA2 4 datasets
ChIP K-562 ENCSR000DKA.GATA2.K-562 214 bp overlap
ChIP K562 ENCFF513FTZ 50 bp overlap
ChIP K562 ENCFF830LLA 245 bp overlap
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 207 bp overlap
GATA3_Nter 1 dataset
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 93 bp overlap
GATA6 2 datasets
ChIP DE_D1 S41-DE-d1-GATA6-exp2 52 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 52 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 235 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR563YDA.HDGF.K-562 211 bp overlap
HMBOX1 1 dataset
ChIP K562 ENCFF055GAZ 96 bp overlap
HOXA3 1 dataset
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 173 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 277 bp overlap
JDP2 2 datasets
Motif DE_24h DE_24h-JDP2_MA0656.2 10 bp overlap
Motif DE_24h DE_24h-JDP2_MA0656.2 10 bp overlap
JUN 18 datasets
Motif DE_24h DE_24h-JUN_MA0488.2 10 bp overlap
Motif DE_24h DE_24h-JUN_MA0488.2 10 bp overlap
ChIP DE_D1 S08-DE-d1-JUN-exp1 277 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 277 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 277 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 277 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 233 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 277 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 277 bp overlap
ChIP H1 ENCFF621PNP 240 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 277 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 277 bp overlap
ChIP K-562 ENCSR000FAH.JUN.K-562 99 bp overlap
ChIP K-562 ENCSR000EGH.JUN.K-562 133 bp overlap
ChIP K562 ENCFF182NTM 175 bp overlap
ChIP MCF-7_abemaciclib GSE157385.JUN.MCF-7_abemaciclib 249 bp overlap
ChIP T-cell GSE136853.JUN.T-cell 187 bp overlap
ChIP WA01 ENCSR000ECA.JUN.WA01 171 bp overlap
JUN::JUNB 2 datasets
Motif DE_24h DE_24h-JUNJUNB_MA1133.2 11 bp overlap
Motif DE_24h DE_24h-JUNJUNB_MA1133.2 11 bp overlap
JUNB 3 datasets
Motif DE_24h DE_24h-JUNB_MA1140.3 11 bp overlap
Motif DE_24h DE_24h-JUNB_MA1140.3 11 bp overlap
ChIP K-562 ENCSR000DJY.JUNB.K-562 205 bp overlap
JUND 9 datasets
Motif DE_24h DE_24h-JUND_MA0492.2 11 bp overlap
Motif DE_24h DE_24h-JUND_MA0492.2 11 bp overlap
ChIP H1 ENCFF010YXS 110 bp overlap
ChIP H1 ENCFF468JZD 231 bp overlap
ChIP K-562 ENCSR000EGN.JUND.K-562 277 bp overlap
ChIP K562 ENCFF336RCR 277 bp overlap
ChIP K562 ENCFF830LVJ 263 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 259 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 218 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 277 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 255 bp overlap
LMO2 1 dataset
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 63 bp overlap
MAFF 1 dataset
ChIP HeLa-S3 ENCSR140DSL.MAFF.HeLa-S3 90 bp overlap
MTA2 2 datasets
ChIP K-562 ENCSR411UYA.MTA2.K-562 137 bp overlap
ChIP K562 ENCFF441KCP 150 bp overlap
MXI1 3 datasets
ChIP WA01 ENCSR000EBR.MXI1.WA01 166 bp overlap
ChIP neural ENCSR934NHU.MXI1.neural 107 bp overlap
ChIP neural cell ENCFF623HQN 198 bp overlap
MZF1 1 dataset
Motif DE_24h DE_24h-MZF1_MA0056.3 8 bp overlap
NEUROD1 1 dataset
ChIP K-562 ENCSR986CDX.NEUROD1.K-562 121 bp overlap
NFATC3 1 dataset
ChIP Hep-G2 GSE97661.NFATC3.Hep-G2 180 bp overlap
NFKB1 2 datasets
Motif DE_24h DE_24h-NFKB1_MA0105.4 13 bp overlap
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 212 bp overlap
NFKB2 1 dataset
Motif DE_24h DE_24h-NFKB2_MA0778.2 11 bp overlap
NFYA 3 datasets
ChIP HeLa-S3 ENCFF016YWF 277 bp overlap
ChIP K-562 GSE26439.NFYA.K-562 277 bp overlap
ChIP K562 ENCFF732HOX 277 bp overlap
NFYB 6 datasets
ChIP Hep-G2 ENCSR935GZV.NFYB.Hep-G2 241 bp overlap
ChIP HepG2 ENCFF174VYX 277 bp overlap
ChIP K-562 GSE26439.NFYB.K-562 277 bp overlap
ChIP K-562 ENCSR000EGQ.NFYB.K-562 254 bp overlap
ChIP K562 ENCFF709RXX 115 bp overlap
ChIP WTC11 ENCFF751ZTQ 159 bp overlap
NFYC 1 dataset
ChIP Hep-G2 ENCSR569ARC.NFYC.Hep-G2 150 bp overlap
NR1D1 1 dataset
Motif DE_24h DE_24h-NR1D1_MA1531.2 14 bp overlap
NR1D2 1 dataset
Motif DE_24h DE_24h-NR1D2_MA1532.2 15 bp overlap
NR2C1 1 dataset
Motif DE_24h DE_24h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_24h DE_24h-NR2C2_MA1536.2 6 bp overlap
NR2F1 1 dataset
Motif DE_24h DE_24h-NR2F1_MA0017.3 12 bp overlap
Nr1H2 1 dataset
Motif DE_24h DE_24h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_24h DE_24h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_24h DE_24h-Nr1h3_MA2337.1 6 bp overlap
Nr2F6 1 dataset
Motif DE_24h DE_24h-Nr2F6_MA0728.1 15 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 239 bp overlap
PDX1 1 dataset
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 201 bp overlap
PLAG1 1 dataset
Motif DE_24h DE_24h-PLAG1_MA0163.1 14 bp overlap
POU2F1 1 dataset
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 277 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 177 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 277 bp overlap
RFX1 5 datasets
ChIP K-562 ENCSR041AXL.RFX1.K-562 277 bp overlap
ChIP K-562 ENCSR968GIB.RFX1.K-562 277 bp overlap
ChIP K562 ENCFF421AVO 234 bp overlap
ChIP K562 ENCFF809XVG 240 bp overlap
ChIP MCF-7 ENCSR066TET.RFX1.MCF-7 275 bp overlap
RFX5 1 dataset
ChIP WA01 ENCSR000ECF.RFX5.WA01 177 bp overlap
RUNX1 1 dataset
ChIP SKH1 GSE87283.RUNX1.SKH1 218 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 277 bp overlap
Rarb 1 dataset
Motif DE_24h DE_24h-Rarb_MA0857.1 16 bp overlap
Rarg 2 datasets
Motif DE_24h DE_24h-Rarg_MA0859.2 15 bp overlap
Motif DE_24h DE_24h-Rarg_MA0860.1 17 bp overlap
SAP30 2 datasets
ChIP H1 ENCFF149IOE 248 bp overlap
ChIP WA01 ENCSR000ATR.SAP30.WA01 165 bp overlap
SIN3A 3 datasets
ChIP H1 ENCFF042ZSL 277 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 277 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 166 bp overlap
SMARCA4 2 datasets
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 69 bp overlap
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 77 bp overlap
SMARCB1 1 dataset
ChIP HeLa-S3 ENCSR000EDK.SMARCB1.HeLa-S3 174 bp overlap
SMARCE1 1 dataset
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 188 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 201 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 263 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 277 bp overlap
SREBF2 1 dataset
ChIP K562 ENCFF440PZY 203 bp overlap
SRSF1 1 dataset
ChIP Hep-G2 GSE120104.SRSF1.Hep-G2 224 bp overlap
SS18 1 dataset
ChIP SYO-1 GSE108025.SS18.SYO-1 276 bp overlap
TAF1 1 dataset
ChIP neural ENCSR000BTX.TAF1.neural 241 bp overlap
TARDBP 2 datasets
ChIP K-562 GSE120104.TARDBP.K-562 217 bp overlap
ChIP K-562 ENCSR429XTR.TARDBP.K-562 189 bp overlap
THRB 1 dataset
Motif DE_24h DE_24h-THRB_MA1576.2 18 bp overlap
USF1 3 datasets
ChIP H1 ENCFF090WVU 241 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 204 bp overlap
ChIP WTC11 ENCFF699QGS 277 bp overlap
USF2 2 datasets
ChIP WA01 ENCSR000ECD.USF2.WA01 150 bp overlap
ChIP WTC11 ENCFF139JAW 277 bp overlap
YY1 3 datasets
ChIP H1 ENCFF524BTL 227 bp overlap
ChIP Huh-7 GSE97411.YY1.Huh-7 277 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 274 bp overlap
ZBTB11 1 dataset
ChIP K562 ENCFF215OUF 101 bp overlap
ZBTB33 1 dataset
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 261 bp overlap
ZBTB7A 2 datasets
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 194 bp overlap
ChIP K-562 GSE103445.ZBTB7A.K-562 185 bp overlap
ZFX 1 dataset
ChIP K562 ENCFF536AJO 121 bp overlap
ZHX1 1 dataset
ChIP HeLa-S3 ENCSR855WKQ.ZHX1.HeLa-S3 101 bp overlap
ZNF281 1 dataset
ChIP K-562 GSE121133.ZNF281.K-562 260 bp overlap
ZNF316 1 dataset
ChIP K562 ENCFF838QCD 189 bp overlap
ZNF366 2 datasets
ChIP HEK293 ENCFF799ATK 207 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 182 bp overlap
ZNF512 2 datasets
ChIP K-562 ENCSR591CCL.ZNF512.K-562 94 bp overlap
ChIP K562 ENCFF601EMZ 277 bp overlap
ZNF629 1 dataset
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 276 bp overlap
ZNF669 1 dataset
Motif DE_24h DE_24h-ZNF669_MA1985.1 15 bp overlap
ZNF84 1 dataset
ChIP K562 ENCFF365MNT 150 bp overlap
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