chr6 : 10,395,774 10,396,478
704 bp 134 TFs 2 linked genes
This 704 bp open chromatin element is linked to TFAP2A-AS2 and TFAP2A and is bound by 134 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
TFAP2A-AS2 8.0 kb Proximal Proximity
TFAP2A 8.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:10,390,774 – 10,401,478
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
134 transcription factors
Source
Cell type
Ar 1 dataset
Motif DE_12h DE_12h-Ar_MA0007.4 16 bp overlap
BCL3 1 dataset
ChIP A-549 ENCSR000BQH.BCL3.A-549 178 bp overlap
BCOR 5 datasets
ChIP WA01 GSE104690.BCOR.WA01 311 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 420 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 226 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 149 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 704 bp overlap
BMI1 1 dataset
ChIP GM12878 ENCSR469WII.BMI1.GM12878 289 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 168 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 423 bp overlap
BRD4 6 datasets
ChIP CHL-1 GSE95585.BRD4.CHL-1 704 bp overlap
ChIP CHL-1_BAY123897 GSE95585.BRD4.CHL-1_BAY123897 254 bp overlap
ChIP CHL-1_OTX015 GSE95585.BRD4.CHL-1_OTX015 224 bp overlap
ChIP HAP1 GSE108387.BRD4.HAP1 704 bp overlap
ChIP HEK293T GSE39579.BRD4.HEK293T 181 bp overlap
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 274 bp overlap
CBX2 2 datasets
ChIP HepG2 ENCFF838BNI 384 bp overlap
ChIP HepG2 ENCFF838BNI 416 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 100 bp overlap
CDK7 1 dataset
ChIP SK-MEL-147 GSE45984.CDK7.SK-MEL-147 196 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 125 bp overlap
CHD7 2 datasets
ChIP WA01 ENCSR000AVA.CHD7.WA01 146 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 222 bp overlap
CTCF 1 dataset
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 186 bp overlap
E2F6 2 datasets
Motif DE_12h DE_12h-E2F6_MA0471.3 8 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 308 bp overlap
E2F7 1 dataset
Motif DE_12h DE_12h-E2F7_MA0758.1 14 bp overlap
E2F8 1 dataset
Motif DE_12h DE_12h-E2F8_MA0865.3 9 bp overlap
ELF1 1 dataset
ChIP K-562 ENCSR000BMD.ELF1.K-562 126 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 704 bp overlap
ESR1 1 dataset
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 94 bp overlap
ESR1_pS118 2 datasets
ChIP MCF-7_E2_sc GSE117569.ESR1_pS118.MCF-7_E2_sc 649 bp overlap
ChIP MCF-7_Veh_sc GSE117569.ESR1_pS118.MCF-7_Veh_sc 655 bp overlap
ETS1 1 dataset
ChIP hESC ENCSR534VHI.ETS1.hESC 283 bp overlap
EZH2 24 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 195 bp overlap
ChIP DND41 ENCSR000ASW.EZH2.DND41 225 bp overlap
ChIP GM12878 ENCFF635TDF 190 bp overlap
ChIP GM23248 ENCFF404ZHM 109 bp overlap
ChIP GM23248 ENCSR131FFJ.EZH2.GM23248 219 bp overlap
ChIP GM23338 ENCFF613YON 385 bp overlap
ChIP H1 ENCFF232NZA 465 bp overlap
ChIP Hep-G2 ENCSR000ARI.EZH2.Hep-G2 95 bp overlap
ChIP HepG2 ENCFF912EIW 398 bp overlap
ChIP HepG2 ENCFF912EIW 598 bp overlap
ChIP RL_CPI169-10d GSE134136.EZH2.RL_CPI169-10d 518 bp overlap
ChIP SF8628 GSE94834.EZH2.SF8628 704 bp overlap
ChIP SK-N-SH ENCFF657FZK 98 bp overlap
ChIP SU-DHL-6 ENCFF882RXP 268 bp overlap
ChIP astrocyte ENCFF365JTP 514 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 328 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 467 bp overlap
ChIP hepatocyte ENCSR384LYW.EZH2.hepatocyte 541 bp overlap
ChIP myotube ENCFF857GWB 344 bp overlap
ChIP myotube ENCFF857GWB 471 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 486 bp overlap
ChIP neural progenitor cell ENCFF018MKA 348 bp overlap
ChIP neural progenitor cell ENCFF018MKA 519 bp overlap
ChIP neural progenitor cell ENCFF472NFV 704 bp overlap
Elf5 1 dataset
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
FOXA2 1 dataset
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 160 bp overlap
GATA1::TAL1 2 datasets
Motif DE_12h DE_12h-GATA1TAL1_MA0140.3 17 bp overlap
Motif ES_0h ES_0h-GATA1TAL1_MA0140.3 17 bp overlap
GATA6 4 datasets
ChIP DE_D1 S41-DE-d1-GATA6-exp2 477 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 228 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 360 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 466 bp overlap
HNF1B 1 dataset
ChIP PANC-1_HNF1B-OE GSE119930.HNF1B.PANC-1_HNF1B-OE 219 bp overlap
HNRNPK 1 dataset
ChIP primary-keratinocyte GSE122327.HNRNPK.primary-keratinocyte 476 bp overlap
HSF1 1 dataset
Motif DE_12h DE_12h-HSF1_MA0486.2 13 bp overlap
HSF2 1 dataset
Motif DE_12h DE_12h-HSF2_MA0770.1 13 bp overlap
HSF4 1 dataset
Motif DE_12h DE_12h-HSF4_MA0771.1 13 bp overlap
Hand1 1 dataset
Motif DE_12h DE_12h-Hand1_MA2123.1 9 bp overlap
Hic1 1 dataset
Motif DE_12h DE_12h-Hic1_MA0739.2 8 bp overlap
IKZF1 2 datasets
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
IKZF2 2 datasets
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 316 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 236 bp overlap
JARID2 4 datasets
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 217 bp overlap
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 443 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 396 bp overlap
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 282 bp overlap
JUN 4 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 254 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 271 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 301 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 323 bp overlap
JUND 1 dataset
ChIP T47D ENCFF318BWX 165 bp overlap
KDM5B 2 datasets
ChIP HCC2157 GSE46055.KDM5B.HCC2157 118 bp overlap
ChIP HCC2157 GSE46055.KDM5B.HCC2157 126 bp overlap
KLF1 1 dataset
Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap
KLF10 1 dataset
Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap
KLF14 2 datasets
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
KLF16 1 dataset
Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap
KLF2 1 dataset
Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap
KLF4 1 dataset
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
KLF5 2 datasets
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
ChIP HEK293_E419K GSE88976.KLF5.HEK293_E419K 282 bp overlap
MAZ 3 datasets
ChIP HEK293 ENCFF994GSG 581 bp overlap
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 415 bp overlap
ChIP HEK293 GSE76494.MAZ.HEK293 299 bp overlap
MORC2 1 dataset
ChIP HeLa_V5-MORC2-KO-W505A-MORC2-mut GSE95451.MORC2.HeLa_V5-MORC2-KO-W505A-MORC2-mut 309 bp overlap
MYBL2 3 datasets
ChIP A-673 GSE119971.MYBL2.A-673 265 bp overlap
ChIP MCF-10A_DOX GSE115787.MYBL2.MCF-10A_DOX 178 bp overlap
ChIP MCF-10A_ctrl GSE115787.MYBL2.MCF-10A_ctrl 167 bp overlap
MYC 1 dataset
ChIP NCI-H2171 GSE41105.MYC.NCI-H2171 175 bp overlap
NANOG 9 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 146 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 198 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 199 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 341 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 529 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 334 bp overlap
ChIP hESC GSE18292.NANOG.hESC 105 bp overlap
NELFE 2 datasets
ChIP HeLa GSE125534.NELFE.HeLa 201 bp overlap
ChIP HeLa GSE125534.NELFE.HeLa 204 bp overlap
NR3C1 3 datasets
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 681 bp overlap
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 673 bp overlap
Motif DE_12h DE_12h-NR3C1_MA0113.4 15 bp overlap
NR3C2 1 dataset
Motif DE_12h DE_12h-NR3C2_MA0727.2 15 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 704 bp overlap
PCGF2 2 datasets
ChIP HEK293T_PCGF2fl GSE119618.PCGF2.HEK293T_PCGF2fl 60 bp overlap
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 431 bp overlap
POLR2A 7 datasets
ChIP HeLa-S3 ENCFF045HUU 571 bp overlap
ChIP HeLa-S3 ENCFF045HUU 371 bp overlap
ChIP PFSK-1 ENCFF576NIT 234 bp overlap
ChIP PFSK-1 ENCFF576NIT 535 bp overlap
ChIP Panc1 ENCFF290KAB 333 bp overlap
ChIP Panc1 ENCFF290KAB 398 bp overlap
ChIP neural cell ENCFF604SPB 134 bp overlap
POU5F1 3 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 704 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 546 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 185 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Pgr 2 datasets
Motif DE_12h DE_12h-Pgr_MA2323.1 17 bp overlap
Motif DE_12h DE_12h-Pgr_MA2323.1 17 bp overlap
RAD21 4 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 106 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 119 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 321 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 91 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 230 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
RNF2 2 datasets
ChIP H1 ENCFF239FFS 486 bp overlap
ChIP WA01 ENCSR784VUY.RNF2.WA01 402 bp overlap
RPA2_phospho 3 datasets
ChIP HeLa GSE108172.RPA2_phospho.HeLa 355 bp overlap
ChIP HeLa_shASF GSE108172.RPA2_phospho.HeLa_shASF 418 bp overlap
ChIP HeLa_shTOP1 GSE108172.RPA2_phospho.HeLa_shTOP1 248 bp overlap
RREB1 1 dataset
Motif DE_12h DE_12h-RREB1_MA0073.2 19 bp overlap
RYBP 2 datasets
ChIP WA01 GSE104690.RYBP.WA01 281 bp overlap
ChIP WA01 GSE104690.RYBP.WA01 225 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 353 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 254 bp overlap
SIN3A 2 datasets
ChIP PANC-1 ENCSR000BOW.SIN3A.PANC-1 145 bp overlap
ChIP Panc1 ENCFF898EEQ 335 bp overlap
SMAD2 1 dataset
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 298 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 430 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 312 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 286 bp overlap
SMAD3 2 datasets
ChIP SUM159PT GSE130364.SMAD3.SUM159PT 704 bp overlap
ChIP breast-cancer_triple-negative GSE130364.SMAD3.breast-cancer_triple-negative 514 bp overlap
SMARCA4 3 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 188 bp overlap
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 284 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 353 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 188 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte GSE85526.SMC1A.primary-epidermal-keratinocyte 174 bp overlap
SMC3 4 datasets
ChIP HeLa GSE126990.SMC3.HeLa 282 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 282 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 282 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 205 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 189 bp overlap
SP1 2 datasets
ChIP WA01 ENCSR000BIR.SP1.WA01 59 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 434 bp overlap
SP4 1 dataset
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SP8 1 dataset
Motif DE_12h DE_12h-SP8_MA0747.2 11 bp overlap
SPI1 2 datasets
ChIP DC_LPS GSE123347.SPI1.DC_LPS 105 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 100 bp overlap
SS18 2 datasets
ChIP Aska-SS GSE108025.SS18.Aska-SS 111 bp overlap
ChIP Aska-SS GSE108025.SS18.Aska-SS 69 bp overlap
SUPT5H 2 datasets
ChIP HeLa GSE125534.SUPT5H.HeLa 691 bp overlap
ChIP HeLa_DOX GSE125534.SUPT5H.HeLa_DOX 699 bp overlap
SUZ12 4 datasets
ChIP GM12878 ENCSR744XTG.SUZ12.GM12878 53 bp overlap
ChIP H1 ENCFF881NFR 357 bp overlap
ChIP H1 ENCFF881NFR 361 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 349 bp overlap
Stat4 1 dataset
Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 408 bp overlap
TEAD1 1 dataset
Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap
TEAD4 2 datasets
Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap
ChIP ESC S26-ESC-d0-TEAD4-exp1 275 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 330 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 253 bp overlap
Wt1 1 dataset
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
YY1 2 datasets
ChIP K-562 ENCSR000BMH.YY1.K-562 101 bp overlap
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 265 bp overlap
ZBTB6 1 dataset
ChIP HEK293 GSE76494.ZBTB6.HEK293 174 bp overlap
ZBTB7A 1 dataset
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 361 bp overlap
ZHX1 1 dataset
ChIP HeLa-S3 ENCSR855WKQ.ZHX1.HeLa-S3 182 bp overlap
ZNF148 1 dataset
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
ZNF157 1 dataset
Motif DE_12h DE_12h-ZNF157_MA2331.1 21 bp overlap
ZNF263 1 dataset
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
ZNF281 1 dataset
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ZNF282 1 dataset
Motif DE_12h DE_12h-ZNF282_MA1154.2 15 bp overlap
ZNF331 1 dataset
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
ZNF460 1 dataset
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 326 bp overlap
ZNF558 1 dataset
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap
ZNF574 1 dataset
ChIP HEK293 GSE76494.ZNF574.HEK293 164 bp overlap
ZNF582 1 dataset
Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap
ZNF684 3 datasets
Motif DE_12h DE_12h-ZNF684_MA1600.2 14 bp overlap
Motif DE_12h DE_12h-ZNF684_MA1600.2 14 bp overlap
Motif DE_12h DE_12h-ZNF684_MA1600.2 14 bp overlap
ZNF740 1 dataset
Motif DE_12h DE_12h-ZNF740_MA0753.3 10 bp overlap
ZNF75A 1 dataset
Motif DE_12h DE_12h-ZNF75A_MA2097.1 12 bp overlap
ZNF75D 1 dataset
Motif DE_12h DE_12h-ZNF75D_MA1601.2 12 bp overlap
ZNF8 1 dataset
Motif DE_12h DE_12h-ZNF8_MA1718.1 20 bp overlap
ZSCAN22 1 dataset
ChIP HEK293 GSE76494.ZSCAN22.HEK293 305 bp overlap