chr4 : 11,427,259 11,428,040
781 bp 115 TFs 2 linked genes
This 781 bp open chromatin element is linked to HS3ST1 and ENSG00000287778 and is bound by 115 transcription factors.
Linked Genes
2 genes
Distance
Gene Expression Dist. to TSS Distance Link type
HS3ST1 853 bp At TSS Proximity
ENSG00000287778 1.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:11,422,259 – 11,433,040
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
115 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP HCT-116 GSE47938.AFF4.HCT-116 318 bp overlap
AR 1 dataset
ChIP MCF-7 GSE48930.AR.MCF-7 178 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 518 bp overlap
BCL11B 3 datasets
ChIP thymus_CD34neg GSE84677.BCL11B.thymus_CD34neg 85 bp overlap
ChIP thymus_CD34neg GSE84677.BCL11B.thymus_CD34neg 82 bp overlap
ChIP thymus_CD34neg GSE84677.BCL11B.thymus_CD34neg 132 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 471 bp overlap
ChIP WA01 GSE104690.BCOR.WA01 257 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 691 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 781 bp overlap
BRD2 1 dataset
ChIP MV4-11_IBET151_500nM GSE120715.BRD2.MV4-11_IBET151_500nM 146 bp overlap
BRD4 3 datasets
ChIP CLL_patient1_4h_CpG GSE109411.BRD4.CLL_patient1_4h_CpG 212 bp overlap
ChIP CLL_patient3 GSE109411.BRD4.CLL_patient3 213 bp overlap
ChIP HT29 GSE73319.BRD4.HT29 718 bp overlap
BRF1 1 dataset
ChIP H9_Activin GSE94418.BRF1.H9_Activin 148 bp overlap
CDK9 2 datasets
ChIP HCT-116_KAP1-KO GSE132705.CDK9.HCT-116_KAP1-KO 452 bp overlap
ChIP HCT-116_KAP1-KO GSE132705.CDK9.HCT-116_KAP1-KO 199 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 268 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 84 bp overlap
CTCF 6 datasets
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP endodermal cell ENCFF471YCZ 329 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 223 bp overlap
ChIP mammary epithelial cell ENCFF164SPU 172 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 99 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 156 bp overlap
CTCFL 1 dataset
Motif DE_12h DE_12h-CTCFL_MA1102.3 8 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 392 bp overlap
E2F6 4 datasets
Motif DE_12h DE_12h-E2F6_MA0471.3 8 bp overlap
Motif DE_12h DE_12h-E2F6_MA0471.3 8 bp overlap
Motif ES_0h ES_0h-E2F6_MA0471.3 8 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 261 bp overlap
E2F8 3 datasets
Motif DE_12h DE_12h-E2F8_MA0865.3 9 bp overlap
Motif DE_12h DE_12h-E2F8_MA0865.3 9 bp overlap
Motif ES_0h ES_0h-E2F8_MA0865.3 9 bp overlap
EGR2 1 dataset
Motif ES_0h ES_0h-EGR2_MA0472.2 11 bp overlap
EHF 1 dataset
Motif ES_0h ES_0h-EHF_MA0598.4 9 bp overlap
ELF1 1 dataset
Motif ES_0h ES_0h-ELF1_MA0473.4 9 bp overlap
ELF3 1 dataset
Motif ES_0h ES_0h-ELF3_MA0640.3 9 bp overlap
ELK4 1 dataset
Motif ES_0h ES_0h-ELK4_MA0076.3 9 bp overlap
ESR2 1 dataset
ChIP MDA-MB-231_estradiol GSE108979.ESR2.MDA-MB-231_estradiol 68 bp overlap
ETS1 4 datasets
ChIP HUVEC-C_12h GSE93030.ETS1.HUVEC-C_12h 208 bp overlap
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 143 bp overlap
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 285 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.ETS1.HUVEC-C_VEGF_12h 208 bp overlap
ETV1 1 dataset
Motif ES_0h ES_0h-ETV1_MA0761.3 9 bp overlap
EZH2 18 datasets
ChIP H1 ENCFF232NZA 781 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 201 bp overlap
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 310 bp overlap
ChIP SF8628 GSE94834.EZH2.SF8628 709 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 465 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 436 bp overlap
ChIP fibroblast of lung ENCFF479BAW 375 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 520 bp overlap
ChIP hESC GSE113817.EZH2.hESC 381 bp overlap
ChIP myotube ENCFF857GWB 471 bp overlap
ChIP myotube ENCFF857GWB 319 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 495 bp overlap
ChIP neural ENCSR511CUH.EZH2.neural 289 bp overlap
ChIP neural cell ENCFF610EPB 300 bp overlap
ChIP neural cell ENCFF610EPB 401 bp overlap
ChIP neural progenitor cell ENCFF018MKA 360 bp overlap
ChIP neural progenitor cell ENCFF018MKA 517 bp overlap
ChIP neural progenitor cell ENCFF472NFV 781 bp overlap
Erg 1 dataset
Motif ES_0h ES_0h-Erg_MA0474.4 10 bp overlap
FEZF2 1 dataset
Motif ES_0h ES_0h-FEZF2_MA2341.1 8 bp overlap
FIGLA 1 dataset
Motif ES_0h ES_0h-FIGLA_MA0820.2 6 bp overlap
FLI1 1 dataset
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 174 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 285 bp overlap
GABPA 2 datasets
Motif ES_0h ES_0h-GABPA_MA0062.4 10 bp overlap
ChIP WA01 ENCSR000BIW.GABPA.WA01 125 bp overlap
GLIS1 1 dataset
Motif ES_0h ES_0h-GLIS1_MA0735.2 15 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 361 bp overlap
HDAC2 1 dataset
ChIP RH4_DMSO-6H_bioMerck GSE116344.HDAC2.RH4_DMSO-6H_bioMerck 158 bp overlap
HDAC6 2 datasets
ChIP GM12878 ENCFF918SGD 377 bp overlap
ChIP GM12878 ENCSR933EYC.HDAC6.GM12878 302 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 242 bp overlap
IKZF2 1 dataset
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
INO80 1 dataset
ChIP Hep-G2 GSE97411.INO80.Hep-G2 258 bp overlap
INSM1 1 dataset
Motif DE_12h DE_12h-INSM1_MA0155.1 12 bp overlap
IRF2 1 dataset
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 156 bp overlap
IRF4 1 dataset
ChIP T-cell GSE136853.IRF4.T-cell 191 bp overlap
Ikzf3 1 dataset
Motif ES_0h ES_0h-Ikzf3_MA1992.2 9 bp overlap
JARID2 5 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 367 bp overlap
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 735 bp overlap
ChIP MRC-5_IPS25 GSE48516.JARID2.MRC-5_IPS25 284 bp overlap
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 741 bp overlap
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 264 bp overlap
KDM1A 1 dataset
ChIP H1 ENCFF696SGD 505 bp overlap
KDM4A 3 datasets
ChIP H1 ENCFF078LED 626 bp overlap
ChIP H1 ENCFF078LED 653 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 781 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 115 bp overlap
KLF17 1 dataset
Motif DE_12h DE_12h-KLF17_MA1514.2 14 bp overlap
LMO2 1 dataset
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 192 bp overlap
MAX 1 dataset
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 114 bp overlap
MED1 2 datasets
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 433 bp overlap
ChIP HCT-116_shLuc_thaps GSE121798.MED1.HCT-116_shLuc_thaps 692 bp overlap
MTF2 1 dataset
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 64 bp overlap
MYCN 4 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 297 bp overlap
ChIP Kelly GSE94782.MYCN.Kelly 158 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 341 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 266 bp overlap
NCOA2 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA2.MCF-7_E2 87 bp overlap
NFKB2 1 dataset
Motif DE_12h DE_12h-NFKB2_MA0778.2 11 bp overlap
NIPBL 1 dataset
ChIP HCT-116_RAD21-mAC GSE104888.NIPBL.HCT-116_RAD21-mAC 352 bp overlap
OSR1 1 dataset
Motif ES_0h ES_0h-OSR1_MA1542.2 8 bp overlap
PHIP 2 datasets
ChIP HCT-116_MLL4-SET-KO_ab833 GSE101646.PHIP.HCT-116_MLL4-SET-KO_ab833 220 bp overlap
ChIP HCT-116_MLL4-SET-KO_ab834 GSE101646.PHIP.HCT-116_MLL4-SET-KO_ab834 96 bp overlap
POLR2A 1 dataset
ChIP HCT116 ENCFF508RDJ 465 bp overlap
POU5F1 3 datasets
ChIP BG03 GSE21614.POU5F1.BG03 199 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 671 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 145 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 670 bp overlap
PRDM9 2 datasets
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
RAD21 3 datasets
ChIP HCT-116 GSE131606.RAD21.HCT-116 188 bp overlap
ChIP HCT-116 GSE131606.RAD21.HCT-116 321 bp overlap
ChIP HUVEC-C_hypoxia GSE94872.RAD21.HUVEC-C_hypoxia 164 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 260 bp overlap
RBPJ 1 dataset
Motif ES_0h ES_0h-RBPJ_MA1116.2 6 bp overlap
RCOR1 1 dataset
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 463 bp overlap
REL 1 dataset
Motif DE_12h DE_12h-REL_MA0101.1 10 bp overlap
RELA 1 dataset
Motif DE_12h DE_12h-RELA_MA0107.1 10 bp overlap
RNF2 2 datasets
ChIP WA01 ENCSR784VUY.RNF2.WA01 722 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 646 bp overlap
RUNX1 2 datasets
ChIP Jurkat GSE85524.RUNX1.Jurkat 130 bp overlap
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 263 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 254 bp overlap
SMARCA4 1 dataset
ChIP MCF-10A GSE74716.SMARCA4.MCF-10A 239 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 255 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte GSE85526.SMC1A.primary-epidermal-keratinocyte 567 bp overlap
SMC3 1 dataset
ChIP neural ENCSR404BPV.SMC3.neural 325 bp overlap
SP2 1 dataset
Motif DE_12h DE_12h-SP2_MA0516.3 9 bp overlap
SP4 1 dataset
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
SP5 4 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 188 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 164 bp overlap
STAT1 1 dataset
ChIP NCI-H358 GSE79707.STAT1.NCI-H358 700 bp overlap
SUPT5H 1 dataset
ChIP HCT-116_DMSO GSE138548.SUPT5H.HCT-116_DMSO 742 bp overlap
SUPT6H 1 dataset
ChIP HCT-116_Inhibitor GSE130509.SUPT6H.HCT-116_Inhibitor 658 bp overlap
SUZ12 6 datasets
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 375 bp overlap
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 99 bp overlap
ChIP H1 ENCFF881NFR 781 bp overlap
ChIP NT2-D1 GSE101538.SUZ12.NT2-D1 612 bp overlap
ChIP NT2/D1 ENCFF574SXS 483 bp overlap
ChIP NT2/D1 ENCFF574SXS 267 bp overlap
TAF3 1 dataset
ChIP HCT-116 GSE43539.TAF3.HCT-116 233 bp overlap
TCF4 1 dataset
Motif ES_0h ES_0h-TCF4_MA0830.3 8 bp overlap
TEAD1 1 dataset
ChIP keratinocyte GSE138727.TEAD1.keratinocyte 127 bp overlap
TET2 1 dataset
ChIP Jurkat_NCKD GSE85524.TET2.Jurkat_NCKD 210 bp overlap
TFAP2A 1 dataset
Motif DE_12h DE_12h-TFAP2A_MA0872.1 13 bp overlap
TFAP2B 1 dataset
Motif DE_12h DE_12h-TFAP2B_MA0813.1 13 bp overlap
TFAP2C 1 dataset
Motif DE_12h DE_12h-TFAP2C_MA0815.1 13 bp overlap
TP63 2 datasets
ChIP breast-organoid GSE113909.TP63.breast-organoid 172 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 181 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 414 bp overlap
Tfcp2l1 2 datasets
Motif DE_12h DE_12h-Tfcp2l1_MA0145.2 14 bp overlap
Motif ES_0h ES_0h-Tfcp2l1_MA0145.2 14 bp overlap
ZBED4 1 dataset
Motif DE_12h DE_12h-ZBED4_MA2328.1 10 bp overlap
ZBTB11 1 dataset
Motif ES_0h ES_0h-ZBTB11_MA2329.1 9 bp overlap
ZBTB48 2 datasets
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 340 bp overlap
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 353 bp overlap
ZBTB7A 1 dataset
Motif ES_0h ES_0h-ZBTB7A_MA0750.3 9 bp overlap
ZEB1 1 dataset
Motif ES_0h ES_0h-ZEB1_MA0103.4 6 bp overlap
ZNF143 1 dataset
Motif ES_0h ES_0h-ZNF143_MA0088.2 16 bp overlap
ZNF148 2 datasets
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
Motif ES_0h ES_0h-ZNF148_MA1653.2 10 bp overlap
ZNF184 2 datasets
Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap
Motif ES_0h ES_0h-ZNF184_MA2120.1 13 bp overlap
ZNF263 1 dataset
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
ZNF283 1 dataset
ChIP HEK293T GSE78099.ZNF283.HEK293T 188 bp overlap
ZNF460 3 datasets
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
Motif ES_0h ES_0h-ZNF460_MA1596.1 16 bp overlap
Motif ES_0h ES_0h-ZNF460_MA1596.1 16 bp overlap
ZNF530 1 dataset
Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap
ZNF574 1 dataset
Motif ES_0h ES_0h-ZNF574_MA1982.2 14 bp overlap
ZNF701 1 dataset
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
ZNF708 2 datasets
Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap
Motif ES_0h ES_0h-ZNF708_MA1730.2 9 bp overlap
ZNF75D 1 dataset
Motif DE_12h DE_12h-ZNF75D_MA1601.2 12 bp overlap
ZNF770 1 dataset
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap
ZNF816 1 dataset
Motif ES_0h ES_0h-ZNF816_MA1719.2 15 bp overlap