chr19 : 13,854,567 13,854,892
325 bp 115 TFs 1 linked gene
This 325 bp open chromatin element is linked to NANOS3 and is bound by 115 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
NANOS3 7.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr19:13,849,567 – 13,859,892
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
115 transcription factors
Source
Cell type
ADNP 1 dataset
ChIP K562 ENCFF492SKF 218 bp overlap
AFF1 2 datasets
ChIP K-562 ENCSR426URK.AFF1.K-562 183 bp overlap
ChIP K562 ENCFF096RYC 293 bp overlap
ARID1B 1 dataset
ChIP K562 ENCFF938UXQ 196 bp overlap
ARID2 2 datasets
ChIP BIN-67_ctrl GSE117734.ARID2.BIN-67_ctrl 325 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 100 bp overlap
ARNT 1 dataset
ChIP MCF-7_Ctrl GSE85352.ARNT.MCF-7_Ctrl 317 bp overlap
ATF1 2 datasets
ChIP K562 ENCFF817JQF 325 bp overlap
ChIP K562 ENCFF817JQF 176 bp overlap
ATF7 1 dataset
ChIP K562 ENCFF308SKS 325 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 208 bp overlap
BRD2 5 datasets
ChIP K-562_DMSO-IFNG GSE138084.BRD2.K-562_DMSO-IFNG 243 bp overlap
ChIP SUM149PT_DMSO GSE131097.BRD2.SUM149PT_DMSO 147 bp overlap
ChIP SUM149PT_JQ1 GSE131097.BRD2.SUM149PT_JQ1 151 bp overlap
ChIP SUM149PT_R_DMSO GSE131097.BRD2.SUM149PT_R_DMSO 180 bp overlap
ChIP SUM149PT_R_JQ1 GSE131097.BRD2.SUM149PT_R_JQ1 157 bp overlap
BRD4 13 datasets
ChIP 22Rv1_DHT-DMSO GSE118247.BRD4.22Rv1_DHT-DMSO 199 bp overlap
ChIP HAP1 GSE108387.BRD4.HAP1 216 bp overlap
ChIP HCT-15 GSE73319.BRD4.HCT-15 211 bp overlap
ChIP K-562_DMSO GSE138084.BRD4.K-562_DMSO 147 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD4.K-562_DMSO-IFNG 137 bp overlap
ChIP K-562_iBET-BD2 GSE138084.BRD4.K-562_iBET-BD2 234 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 181 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 174 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 133 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 145 bp overlap
ChIP SUM1315_DMSO GSE63581.BRD4.SUM1315_DMSO 289 bp overlap
ChIP SUM149PT_DMSO GSE131097.BRD4.SUM149PT_DMSO 122 bp overlap
ChIP SUM149_DMSO GSE63581.BRD4.SUM149_DMSO 123 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231 GSE112444.CDKN1B.MDA-MB-231 87 bp overlap
CEBPB 2 datasets
ChIP A-549 ENCSR000BUB.CEBPB.A-549 117 bp overlap
ChIP A549 ENCFF235AIY 198 bp overlap
CTBP1 2 datasets
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 155 bp overlap
ChIP K562 ENCFF403WPG 66 bp overlap
CTCF 5 datasets
ChIP 22Rv1 ENCFF466OXN 190 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 320 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 274 bp overlap
ChIP K562 ENCFF400DFR 241 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 118 bp overlap
CXXC5 1 dataset
ChIP K562 ENCFF497CZN 320 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 325 bp overlap
DDX5 1 dataset
ChIP NTERA2 GSE58641.DDX5.NTERA2 217 bp overlap
DPF2 6 datasets
ChIP BIN-67_ctrl GSE117734.DPF2.BIN-67_ctrl 270 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-K785R 194 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-T910M 242 bp overlap
ChIP K-562 ENCSR219BXP.DPF2.K-562 130 bp overlap
ChIP K562 ENCFF739JDE 93 bp overlap
ChIP K562 ENCFF775HUO 51 bp overlap
E2F1 2 datasets
ChIP K562 ENCFF163BSY 320 bp overlap
ChIP MDA-MB-231 GSE95303.E2F1.MDA-MB-231 170 bp overlap
E2F5 1 dataset
ChIP K562 ENCFF688PUB 325 bp overlap
E4F1 2 datasets
ChIP K-562 ENCSR731LHZ.E4F1.K-562 246 bp overlap
ChIP K562 ENCFF622HMZ 325 bp overlap
EGR1 2 datasets
ChIP K562 ENCFF006PJY 245 bp overlap
ChIP K562 ENCFF113OPQ 195 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 325 bp overlap
EMSY 1 dataset
ChIP K562 ENCFF511ZZZ 66 bp overlap
EP400 1 dataset
ChIP K562 ENCFF850OZQ 325 bp overlap
ETS1 1 dataset
ChIP OVCAR-8 GSE101832.ETS1.OVCAR-8 81 bp overlap
FOSL2 1 dataset
ChIP A-549 ENCSR448TVS.FOSL2.A-549 147 bp overlap
FOXK2 1 dataset
ChIP K562 ENCFF245WKP 108 bp overlap
GABPA 2 datasets
ChIP K562 ENCFF139LXS 325 bp overlap
ChIP K562 ENCFF139LXS 271 bp overlap
GABPB1 1 dataset
ChIP K562 ENCFF015GDS 163 bp overlap
GATA3 1 dataset
ChIP A549 ENCFF226FVV 325 bp overlap
HDAC1 1 dataset
ChIP K562 ENCFF968WBH 221 bp overlap
HDAC2 2 datasets
ChIP K-562 ENCSR075HTM.HDAC2.K-562 104 bp overlap
ChIP K562 ENCFF744ALD 182 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR197ALX.HDGF.K-562 135 bp overlap
IKZF1 4 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 153 bp overlap
ChIP K562 ENCFF348IBL 258 bp overlap
ChIP K562 ENCFF771OHZ 207 bp overlap
ChIP K562 ENCFF771OHZ 228 bp overlap
INTS11 1 dataset
ChIP HeLa GSE125534.INTS11.HeLa 112 bp overlap
JUND 1 dataset
ChIP K562 ENCFF830LVJ 240 bp overlap
KLF1 2 datasets
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 210 bp overlap
ChIP HUDEP-2_S4 GSE97671.KLF1.HUDEP-2_S4 59 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 261 bp overlap
KLF5 1 dataset
ChIP ESO-26 GSE132680.KLF5.ESO-26 325 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 126 bp overlap
KMT2C 2 datasets
ChIP BIN-67_ctrl GSE117734.KMT2C.BIN-67_ctrl 325 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2C.BIN-67_lentivirus-SMARCA4 252 bp overlap
KMT2D 3 datasets
ChIP BIN-67_ctrl GSE117734.KMT2D.BIN-67_ctrl 325 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4 325 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4-T910M 286 bp overlap
L3MBTL2 2 datasets
ChIP HEK293T ENCFF482NJV 212 bp overlap
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 325 bp overlap
MAFF 2 datasets
ChIP HeLa-S3 ENCFF783SBT 169 bp overlap
ChIP HeLa-S3 ENCSR140DSL.MAFF.HeLa-S3 116 bp overlap
MAFK 1 dataset
ChIP A549 ENCFF371EPR 174 bp overlap
MAX 5 datasets
ChIP A-549 ENCSR000BTJ.MAX.A-549 116 bp overlap
ChIP A549 ENCFF985GDG 186 bp overlap
ChIP K562 ENCFF110LJS 176 bp overlap
ChIP K562 ENCFF398VJM 286 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 185 bp overlap
MED26 2 datasets
ChIP HCT-116 GSE121355.MED26.HCT-116 325 bp overlap
ChIP HCT-116_aux GSE121355.MED26.HCT-116_aux 325 bp overlap
MGA 1 dataset
ChIP K562 ENCFF140CEX 241 bp overlap
MITF 1 dataset
ChIP K562 ENCFF731XJJ 63 bp overlap
MNT 3 datasets
ChIP K-562 ENCSR512NLO.MNT.K-562 270 bp overlap
ChIP K562 ENCFF450LDL 135 bp overlap
ChIP K562 ENCFF450LDL 144 bp overlap
MTA1 1 dataset
ChIP K562 ENCFF230ZKA 229 bp overlap
MYC 2 datasets
ChIP U2OS_Doxy GSE77356.MYC.U2OS_Doxy 81 bp overlap
ChIP U2OS_SHRCTR GSE77356.MYC.U2OS_SHRCTR 154 bp overlap
MYCN 2 datasets
ChIP Kelly GSE94822.MYCN.Kelly 137 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 142 bp overlap
NCOA1 1 dataset
ChIP K-562 ENCSR658WFQ.NCOA1.K-562 257 bp overlap
NELFCD 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.NELFCD.DLD-1_NELFCD-AID 230 bp overlap
NELFE 2 datasets
ChIP HeLa GSE125534.NELFE.HeLa 138 bp overlap
ChIP K-562_HS GSE112379.NELFE.K-562_HS 230 bp overlap
NR3C1 1 dataset
ChIP breast_tumor_Male_21 GSE104399.NR3C1.breast_tumor_Male_21 110 bp overlap
NR5A2 1 dataset
ChIP A-549 ENCSR190GIW.NR5A2.A-549 133 bp overlap
NRF1 1 dataset
ChIP K562 ENCFF689EWI 283 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 113 bp overlap
PHF8 2 datasets
ChIP K562 ENCFF217UCA 325 bp overlap
ChIP K562 ENCFF217UCA 320 bp overlap
POLR2A 7 datasets
ChIP HCT116 ENCFF508RDJ 303 bp overlap
ChIP HCT116 ENCFF508RDJ 285 bp overlap
ChIP HeLa-S3 ENCFF773DNG 105 bp overlap
ChIP IMR-90 ENCFF672YWV 285 bp overlap
ChIP K562 ENCFF215CWW 179 bp overlap
ChIP K562 ENCFF262YXJ 287 bp overlap
ChIP K562 ENCFF836GHX 65 bp overlap
POLR2G 1 dataset
ChIP K562 ENCFF047BLG 323 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 246 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 129 bp overlap
RAD21 4 datasets
ChIP A-549 ENCSR000BUC.RAD21.A-549 110 bp overlap
ChIP HCT-116 GSE131606.RAD21.HCT-116 325 bp overlap
ChIP K-562_RF2-insertion GSE140868.RAD21.K-562_RF2-insertion 100 bp overlap
ChIP K562 ENCFF634XYR 289 bp overlap
RAD51 1 dataset
ChIP K562 ENCFF133ELP 172 bp overlap
RBFOX2 4 datasets
ChIP K-562 GSE120104.RBFOX2.K-562 325 bp overlap
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 69 bp overlap
ChIP K562 ENCFF196WTG 309 bp overlap
ChIP K562 ENCFF967GRF 325 bp overlap
RBPJ 1 dataset
ChIP SCC_4h GSE156486.RBPJ.SCC_4h 136 bp overlap
REST 1 dataset
ChIP K-562 ENCSR000BMW.REST.K-562 78 bp overlap
RFX1 3 datasets
ChIP K-562 ENCSR041AXL.RFX1.K-562 275 bp overlap
ChIP K-562 ENCSR968GIB.RFX1.K-562 228 bp overlap
ChIP K562 ENCFF809XVG 152 bp overlap
RLF 1 dataset
ChIP K562 ENCFF998IPA 288 bp overlap
RNF2 1 dataset
ChIP K562 ENCFF653BQJ 318 bp overlap
RUVBL2 1 dataset
ChIP U2OS GSE130602.RUVBL2.U2OS 325 bp overlap
SETDB1 2 datasets
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 325 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 325 bp overlap
SMAD3 2 datasets
ChIP HCC1954 GSE104760.SMAD3.HCC1954 142 bp overlap
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 183 bp overlap
SMAD4 2 datasets
ChIP K562 ENCFF628RBP 325 bp overlap
ChIP K562 ENCFF628RBP 226 bp overlap
SMARCA4 9 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 275 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 325 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 325 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 131 bp overlap
ChIP K562 ENCFF316MCJ 167 bp overlap
ChIP K562 ENCFF506JCB 310 bp overlap
ChIP K562 ENCFF506JCB 110 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 130 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 223 bp overlap
SMARCC1 5 datasets
ChIP BIN-67 GSE117734.SMARCC1.BIN-67 157 bp overlap
ChIP BIN-67_ctrl GSE117734.SMARCC1.BIN-67_ctrl 222 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 169 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-K785R 325 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 263 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 148 bp overlap
SREBP2 1 dataset
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 89 bp overlap
SRF 1 dataset
ChIP K562 ENCFF766EOO 299 bp overlap
SS18 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 209 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SS18.BIN-67_lentivirus-SMARCA4-K785R 241 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 325 bp overlap
SUPT5H 9 datasets
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 194 bp overlap
ChIP DLD-1_NELFCD-AID_treated GSE144786.SUPT5H.DLD-1_NELFCD-AID_treated 127 bp overlap
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 179 bp overlap
ChIP HEK293_PNUTS GSE134198.SUPT5H.HEK293_PNUTS 130 bp overlap
ChIP HeLa GSE125534.SUPT5H.HeLa 130 bp overlap
ChIP HeLa_DOX GSE125534.SUPT5H.HeLa_DOX 111 bp overlap
ChIP K562 ENCFF902PAW 93 bp overlap
ChIP U2OS_siCtrl GSE115365.SUPT5H.U2OS_siCtrl 109 bp overlap
ChIP U2OS_siMYC_ON GSE115365.SUPT5H.U2OS_siMYC_ON 52 bp overlap
TAF3 1 dataset
ChIP HCT-116 GSE43539.TAF3.HCT-116 143 bp overlap
TFAP4 1 dataset
ChIP K562 ENCFF727PXG 102 bp overlap
TFE3 1 dataset
ChIP K562 ENCFF697ABG 79 bp overlap
TOE1 1 dataset
ChIP K562 ENCFF728FRA 212 bp overlap
VEZF1 2 datasets
ChIP K562 ENCFF053XDV 325 bp overlap
ChIP K562 ENCFF053XDV 174 bp overlap
YY1 7 datasets
ChIP HCT-116 ENCSR000BNX.YY1.HCT-116 78 bp overlap
ChIP HCT116 ENCFF497ZQZ 216 bp overlap
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 325 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 325 bp overlap
ChIP K562 ENCFF199FNC 317 bp overlap
ChIP K562 ENCFF199FNC 110 bp overlap
ChIP K562 ENCFF660QRE 185 bp overlap
ZBED1 1 dataset
ChIP K562 ENCFF886JDF 162 bp overlap
ZBTB33 4 datasets
ChIP HepG2 ENCFF778UKV 248 bp overlap
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 325 bp overlap
ChIP MCF-7 ENCFF622BUU 252 bp overlap
ChIP MCF-7 ENCSR231YFE.ZBTB33.MCF-7 325 bp overlap
ZBTB8A 2 datasets
ChIP HEK293 ENCFF303WRD 183 bp overlap
ChIP HEK293 ENCSR481FEC.ZBTB8A.HEK293 232 bp overlap
ZEB2 2 datasets
ChIP K562 ENCFF795CMH 50 bp overlap
ChIP K562 ENCFF975RXS 96 bp overlap
ZFX 2 datasets
ChIP K562 ENCFF536AJO 97 bp overlap
ChIP K562 ENCFF536AJO 325 bp overlap
ZKSCAN8 1 dataset
ChIP K562 ENCFF387ETI 124 bp overlap
ZNF121 1 dataset
ChIP WTC11 ENCFF291API 178 bp overlap
ZNF281 1 dataset
ChIP K562 ENCFF594VNM 212 bp overlap
ZNF302 1 dataset
ChIP A549 ENCFF333REI 89 bp overlap
ZNF316 1 dataset
ChIP K562 ENCFF838QCD 139 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 283 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 325 bp overlap
ZNF341 1 dataset
ChIP HEK293 GSE76494.ZNF341.HEK293 131 bp overlap
ZNF362 2 datasets
ChIP HEK293 ENCFF436CGE 325 bp overlap
ChIP HEK293 ENCSR715QNO.ZNF362.HEK293 243 bp overlap
ZNF384 5 datasets
ChIP HEK293T ENCFF019DZX 325 bp overlap
ChIP HEK293T ENCSR882ICT.ZNF384.HEK293T 325 bp overlap
ChIP HepG2 ENCFF129PLC 281 bp overlap
ChIP K-562 ENCSR000EFP.ZNF384.K-562 155 bp overlap
ChIP K562 ENCFF365NXQ 178 bp overlap
ZNF592 1 dataset
ChIP K562 ENCFF547OSS 300 bp overlap
ZNF639 3 datasets
ChIP K562 ENCFF267NLX 190 bp overlap
ChIP K562 ENCFF271FQR 294 bp overlap
ChIP K562 ENCFF271FQR 94 bp overlap
ZNF766 1 dataset
ChIP K562 ENCFF348LDO 293 bp overlap