chr12 : 66,616,579 66,616,894
315 bp 115 TFs 0 linked genes
This 315 bp open chromatin element has no linked target genes and is bound by 115 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:66,611,579 – 66,621,894
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
115 transcription factors
Source
Cell type
AFF4 2 datasets
ChIP WTC11 ENCFF556XTF 275 bp overlap
ChIP WTC11 ENCFF556XTF 76 bp overlap
AHR 3 datasets
ChIP GM01310_3MC GSE116632.AHR.GM01310_3MC 157 bp overlap
ChIP GM01310_DMSO GSE116632.AHR.GM01310_DMSO 157 bp overlap
ChIP MCF-7_TCDD_1d GSE90550.AHR.MCF-7_TCDD_1d 78 bp overlap
AR 1 dataset
ChIP MCF-7 GSE48930.AR.MCF-7 156 bp overlap
ASCL1 3 datasets
Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap
Motif DE_24h DE_24h-ASCL1_MA1631.2 9 bp overlap
Motif ES_0h ES_0h-ASCL1_MA1631.2 9 bp overlap
ASH2L 2 datasets
ChIP GM12878 ENCSR849WCQ.ASH2L.GM12878 314 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 315 bp overlap
ATF2 2 datasets
ChIP GM12878 ENCFF521LQJ 268 bp overlap
ChIP GM12878 ENCSR000BQK.ATF2.GM12878 183 bp overlap
Ascl2 3 datasets
Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap
Motif DE_24h DE_24h-Ascl2_MA0816.1 10 bp overlap
Motif ES_0h ES_0h-Ascl2_MA0816.1 10 bp overlap
BCL3 2 datasets
ChIP GM12878 ENCFF854PAY 228 bp overlap
ChIP GM12878 ENCSR000BNQ.BCL3.GM12878 118 bp overlap
BCL6 3 datasets
ChIP B-cell_GERMINAL_CENTER GSE68349.BCL6.B-cell_GERMINAL_CENTER 315 bp overlap
ChIP B-cell_GERMINAL_CENTER GSE43350.BCL6.B-cell_GERMINAL_CENTER 315 bp overlap
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 315 bp overlap
BCLAF1 2 datasets
ChIP GM12878 ENCFF306JRM 311 bp overlap
ChIP GM12878 ENCFF306JRM 96 bp overlap
BCOR 2 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 99 bp overlap
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 162 bp overlap
BRD4 10 datasets
ChIP GM15850_DMSO GSE99402.BRD4.GM15850_DMSO 315 bp overlap
ChIP GM15850_Syn-TEF1 GSE99402.BRD4.GM15850_Syn-TEF1 315 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 310 bp overlap
ChIP MM1-S_DMSO GSE42161.BRD4.MM1-S_DMSO 161 bp overlap
ChIP MM1-S_JQ1_150NM GSE49224.BRD4.MM1-S_JQ1_150NM 89 bp overlap
ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 315 bp overlap
ChIP Mutu-1_JQ1 GSE84213.BRD4.Mutu-1_JQ1 315 bp overlap
ChIP RH4 GSE83726.BRD4.RH4 315 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 273 bp overlap
ChIP SEM GSE83671.BRD4.SEM 195 bp overlap
CBFB 1 dataset
ChIP GM12878 ENCSR860UHK.CBFB.GM12878 160 bp overlap
CHD4 1 dataset
ChIP pre-B-cell GSE107886.CHD4.pre-B-cell 315 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 187 bp overlap
CREBBP 2 datasets
ChIP tonsil_GCBC_p5 GSE89688.CREBBP.tonsil_GCBC_p5 315 bp overlap
ChIP tonsil_GCBc_p4 GSE89688.CREBBP.tonsil_GCBc_p4 315 bp overlap
CREM 2 datasets
ChIP GM12878 ENCSR839XZU.CREM.GM12878 86 bp overlap
ChIP GM12878 ENCSR839XZU.CREM.GM12878 136 bp overlap
EBF1 2 datasets
ChIP LCL GSE75503.EBF1.LCL 126 bp overlap
ChIP MUTUL GSE75503.EBF1.MUTUL 249 bp overlap
EED 1 dataset
ChIP GM12878 ENCFF266FYW 92 bp overlap
EP300 2 datasets
ChIP 697 GSE138031.EP300.697 308 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 101 bp overlap
ERG 1 dataset
ChIP SEM GSE117864.ERG.SEM 176 bp overlap
FIGLA 3 datasets
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
Motif DE_24h DE_24h-FIGLA_MA0820.2 6 bp overlap
Motif ES_0h ES_0h-FIGLA_MA0820.2 6 bp overlap
FLI1 3 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 149 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 72 bp overlap
ChIP SEM GSE117864.FLI1.SEM 85 bp overlap
FOXM1 3 datasets
ChIP GM12878 ENCFF264DJE 248 bp overlap
ChIP GM12878 ENCSR000BRU.FOXM1.GM12878 112 bp overlap
ChIP GM12878 ENCSR000BRU.FOXM1.GM12878 140 bp overlap
FOXO1 1 dataset
ChIP B-cell_GERMINAL_CENTER GSE68349.FOXO1.B-cell_GERMINAL_CENTER 315 bp overlap
FOXP1 1 dataset
ChIP B-cell_CD77-pos GSE114803.FOXP1.B-cell_CD77-pos 185 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 129 bp overlap
GFI1B 2 datasets
ChIP HEK293 ENCFF264FBS 150 bp overlap
ChIP HEK293 ENCSR445PDR.GFI1B.HEK293 118 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 125 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 96 bp overlap
HDAC2 4 datasets
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 306 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 315 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 178 bp overlap
ChIP pre-B-cell GSE107886.HDAC2.pre-B-cell 314 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 315 bp overlap
IKZF1 3 datasets
ChIP BCR-ABL1 GSE58825.IKZF1.BCR-ABL1 174 bp overlap
ChIP GM12878 ENCFF616FJX 238 bp overlap
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 315 bp overlap
IKZF2 6 datasets
ChIP GM12878 ENCFF238LYK 315 bp overlap
ChIP GM12878 ENCFF238LYK 123 bp overlap
ChIP GM12878 ENCFF918AID 315 bp overlap
ChIP GM12878 ENCFF918AID 119 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 315 bp overlap
ChIP GM12878 ENCSR822AHX.IKZF2.GM12878 287 bp overlap
IKZF3 1 dataset
ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 315 bp overlap
IRF4 1 dataset
ChIP GM12878 ENCSR000BGY.IRF4.GM12878 116 bp overlap
MAFK 1 dataset
ChIP OCI-Ly7 GSE47784.MAFK.OCI-Ly7 315 bp overlap
MAX 1 dataset
ChIP P493-6 GSE36354.MAX.P493-6 126 bp overlap
MED 1 dataset
ChIP SEM GSE83671.MED.SEM 315 bp overlap
MED1 8 datasets
ChIP GM12878 GSE93080.MED1.GM12878 163 bp overlap
ChIP MCF-7_SHRARS GSE60270.MED1.MCF-7_SHRARS 145 bp overlap
ChIP MM1-S_JQ1_5000NM GSE49224.MED1.MM1-S_JQ1_5000NM 285 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.MED1.MM1-S_JQ1_500NM 97 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.MED1.MM1-S_JQ1_50NM 107 bp overlap
ChIP MM1-S_JQ1_5NM GSE49224.MED1.MM1-S_JQ1_5NM 169 bp overlap
ChIP MM1-S_JQ1_5NM GSE49224.MED1.MM1-S_JQ1_5NM 67 bp overlap
ChIP RH4 GSE83726.MED1.RH4 199 bp overlap
MEF2A 1 dataset
ChIP GM12878 ENCSR000BKB.MEF2A.GM12878 92 bp overlap
MEF2B 3 datasets
ChIP DLBCL GSE110682.MEF2B.DLBCL 276 bp overlap
ChIP DOHH2 GSE69558.MEF2B.DOHH2 315 bp overlap
ChIP tonsil GSE110682.MEF2B.tonsil 315 bp overlap
MEIS1 1 dataset
ChIP SEM GSE38339.MEIS1.SEM 154 bp overlap
MSC 3 datasets
Motif DE_12h DE_12h-MSC_MA0665.1 10 bp overlap
Motif DE_24h DE_24h-MSC_MA0665.1 10 bp overlap
Motif ES_0h ES_0h-MSC_MA0665.1 10 bp overlap
MTA2 1 dataset
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 315 bp overlap
MTA3 1 dataset
ChIP GM12878 ENCSR000BRH.MTA3.GM12878 228 bp overlap
MYB 3 datasets
ChIP Jurkat GSE59657.MYB.Jurkat 88 bp overlap
ChIP PF-382 GSE94000.MYB.PF-382 281 bp overlap
ChIP SEM GSE117864.MYB.SEM 268 bp overlap
MYC 6 datasets
ChIP MM1-S_DMSO GSE36354.MYC.MM1-S_DMSO 164 bp overlap
ChIP P493-6 GSE77061.MYC.P493-6 50 bp overlap
ChIP P493-6_Dpy30-shRNA GSE101853.MYC.P493-6_Dpy30-shRNA 105 bp overlap
ChIP P493-6_MST-312 GSE77061.MYC.P493-6_MST-312 127 bp overlap
ChIP P493-6_MST-312 GSE77061.MYC.P493-6_MST-312 65 bp overlap
ChIP Ramos GSE30726.MYC.Ramos 315 bp overlap
MYCN 5 datasets
ChIP CHP-134 GSE129588.MYCN.CHP-134 112 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 138 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 124 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 159 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 103 bp overlap
MYOD1 1 dataset
ChIP RH4 GSE83726.MYOD1.RH4 162 bp overlap
NANOG 2 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 205 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 180 bp overlap
NCOR2 1 dataset
ChIP B-cell_GERMINAL_CENTER GSE43350.NCOR2.B-cell_GERMINAL_CENTER 144 bp overlap
NFIC 2 datasets
ChIP GM12878 ENCFF259FWL 136 bp overlap
ChIP GM12878 ENCSR000BRN.NFIC.GM12878 315 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 140 bp overlap
NR3C1 2 datasets
ChIP ALL_DEX GSE109946.NR3C1.ALL_DEX 129 bp overlap
ChIP SUP-B15_DEX GSE107584.NR3C1.SUP-B15_DEX 315 bp overlap
OSR2 1 dataset
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 185 bp overlap
PAX5 2 datasets
ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 101 bp overlap
ChIP OCI-Ly7 GSE69558.PAX5.OCI-Ly7 166 bp overlap
PBX1 1 dataset
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 315 bp overlap
POLR2A 5 datasets
ChIP GM12891 ENCFF012SUT 315 bp overlap
ChIP GM12891 ENCFF012SUT 64 bp overlap
ChIP GM12892 ENCFF542ZFO 315 bp overlap
ChIP Raji ENCFF613VGX 315 bp overlap
ChIP Raji ENCFF613VGX 171 bp overlap
POU2AF1 2 datasets
ChIP pre-B-cell GSE107886.POU2AF1.pre-B-cell 72 bp overlap
ChIP pre-B-cell GSE107886.POU2AF1.pre-B-cell 169 bp overlap
POU2F2 5 datasets
ChIP GM12878 ENCFF207RKY 77 bp overlap
ChIP GM12891 ENCFF166YPP 130 bp overlap
ChIP GM12891 ENCFF166YPP 107 bp overlap
ChIP GM12891 ENCSR000BII.POU2F2.GM12891 75 bp overlap
ChIP pre-B-cell GSE107886.POU2F2.pre-B-cell 238 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 315 bp overlap
RAD21 1 dataset
ChIP GM12878 ENCSR000BMY.RAD21.GM12878 116 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 173 bp overlap
RBPJ 2 datasets
ChIP LCL GSE75503.RBPJ.LCL 103 bp overlap
ChIP NHEK GSE29498.RBPJ.NHEK 61 bp overlap
RELA 1 dataset
ChIP BJAB GSE117250.RELA.BJAB 94 bp overlap
REST 1 dataset
ChIP WA01 ENCSR000BHM.REST.WA01 117 bp overlap
RUNX1 3 datasets
ChIP 697 GSE138031.RUNX1.697 315 bp overlap
ChIP BCP-ALL_patient1 GSE109377.RUNX1.BCP-ALL_patient1 182 bp overlap
ChIP MV4-11 GSE79899.RUNX1.MV4-11 81 bp overlap
RUNX2 1 dataset
ChIP Karpas-45 GSE151819.RUNX2.Karpas-45 143 bp overlap
RUNX3 1 dataset
ChIP GM12878 ENCFF395WHA 183 bp overlap
Runx1 3 datasets
Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap
Motif DE_24h DE_24h-Runx1_MA0002.3 9 bp overlap
Motif ES_0h ES_0h-Runx1_MA0002.3 9 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000BIS.SIN3A.WA01 141 bp overlap
SNAI1 3 datasets
Motif DE_12h DE_12h-SNAI1_MA1558.2 7 bp overlap
Motif DE_24h DE_24h-SNAI1_MA1558.2 7 bp overlap
Motif ES_0h ES_0h-SNAI1_MA1558.2 7 bp overlap
SNAI2 1 dataset
ChIP keratinocyte_LacZ GSE55421.SNAI2.keratinocyte_LacZ 177 bp overlap
SOX8 1 dataset
ChIP RH4 GSE116344.SOX8.RH4 315 bp overlap
SP1 1 dataset
ChIP GM12878 ENCSR000BHK.SP1.GM12878 123 bp overlap
SPI1 2 datasets
ChIP GM12891 ENCFF563IUT 207 bp overlap
ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 175 bp overlap
STAT3 1 dataset
ChIP OCI-Ly7 GSE50723.STAT3.OCI-Ly7 315 bp overlap
TAF1 1 dataset
ChIP GM12892 ENCFF440DJD 139 bp overlap
TCF12 6 datasets
Motif DE_12h DE_12h-TCF12_MA1648.2 7 bp overlap
Motif DE_24h DE_24h-TCF12_MA1648.2 7 bp overlap
Motif ES_0h ES_0h-TCF12_MA1648.2 7 bp overlap
ChIP GM12878 ENCFF506WWB 175 bp overlap
ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 315 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 108 bp overlap
TCF3 9 datasets
ChIP 697_HF GSE138031.TCF3.697_HF 167 bp overlap
Motif DE_12h DE_12h-TCF3_MA0522.4 7 bp overlap
Motif DE_24h DE_24h-TCF3_MA0522.4 7 bp overlap
Motif ES_0h ES_0h-TCF3_MA0522.4 7 bp overlap
ChIP GM12878 ENCFF658WIO 170 bp overlap
ChIP GM12878 ENCSR000BQT.TCF3.GM12878 106 bp overlap
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 315 bp overlap
ChIP Ramos GSE139810.TCF3.Ramos 315 bp overlap
ChIP SEM GSE85988.TCF3.SEM 290 bp overlap
TCF4 5 datasets
ChIP CAL-1 GSE76147.TCF4.CAL-1 315 bp overlap
Motif DE_12h DE_12h-TCF4_MA0830.3 8 bp overlap
Motif DE_24h DE_24h-TCF4_MA0830.3 8 bp overlap
Motif ES_0h ES_0h-TCF4_MA0830.3 8 bp overlap
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 315 bp overlap
THRB 3 datasets
Motif DE_12h DE_12h-THRB_MA1576.2 18 bp overlap
Motif DE_24h DE_24h-THRB_MA1576.2 18 bp overlap
Motif ES_0h ES_0h-THRB_MA1576.2 18 bp overlap
TP53 1 dataset
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 134 bp overlap
TP73 1 dataset
ChIP GM12878 GSE97661.TP73.GM12878 90 bp overlap
TP73_TA 1 dataset
ChIP SaOS-2 GSE15780.TP73_TA.SaOS-2 189 bp overlap
XRCC5 2 datasets
ChIP K-562 ENCSR506KWJ.XRCC5.K-562 127 bp overlap
ChIP K-562 GSE120104.XRCC5.K-562 126 bp overlap
YY1 1 dataset
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 315 bp overlap
ZBED1 1 dataset
ChIP GM12878 ENCSR207PFI.ZBED1.GM12878 71 bp overlap
ZBTB21 1 dataset
ChIP WTC11 ENCFF677ZYY 279 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 126 bp overlap
ZBTB7C 3 datasets
Motif DE_12h DE_12h-ZBTB7C_MA0695.2 8 bp overlap
Motif DE_24h DE_24h-ZBTB7C_MA0695.2 8 bp overlap
Motif ES_0h ES_0h-ZBTB7C_MA0695.2 8 bp overlap
ZEB1 3 datasets
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
Motif DE_24h DE_24h-ZEB1_MA0103.4 6 bp overlap
Motif ES_0h ES_0h-ZEB1_MA0103.4 6 bp overlap
ZIC1 3 datasets
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
Motif DE_24h DE_24h-ZIC1_MA0696.1 14 bp overlap
Motif ES_0h ES_0h-ZIC1_MA0696.1 14 bp overlap
ZIC2 2 datasets
ChIP HCT-116_WT GSE127960.ZIC2.HCT-116_WT 159 bp overlap
ChIP HEK293 ENCFF033NQQ 267 bp overlap
ZIC4 3 datasets
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
Motif DE_24h DE_24h-ZIC4_MA0751.2 14 bp overlap
Motif ES_0h ES_0h-ZIC4_MA0751.2 14 bp overlap
ZIC5 7 datasets
Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap
Motif DE_24h DE_24h-ZIC5_MA1584.2 15 bp overlap
Motif ES_0h ES_0h-ZIC5_MA1584.2 15 bp overlap
ChIP HCT-116_WT-CT289 GSE127960.ZIC5.HCT-116_WT-CT289 227 bp overlap
ChIP HCT-116_WT-FL290 GSE127960.ZIC5.HCT-116_WT-FL290 143 bp overlap
ChIP HCT-116_sc1 GSE127960.ZIC5.HCT-116_sc1 265 bp overlap
ChIP HCT-116_sc2 GSE127960.ZIC5.HCT-116_sc2 236 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 147 bp overlap
ZNF189 2 datasets
ChIP HEK293 ENCFF638TIB 250 bp overlap
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 315 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 291 bp overlap
ZNF597 1 dataset
ChIP GM12878 GSE97661.ZNF597.GM12878 123 bp overlap
ZNF682 1 dataset
Motif DE_24h DE_24h-ZNF682_MA1599.2 11 bp overlap
Zic1::Zic2 3 datasets
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_24h DE_24h-Zic1Zic2_MA1628.2 7 bp overlap
Motif ES_0h ES_0h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 3 datasets
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif DE_24h DE_24h-Zic2_MA1629.2 9 bp overlap
Motif ES_0h ES_0h-Zic2_MA1629.2 9 bp overlap
Zic3 3 datasets
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
Motif DE_24h DE_24h-Zic3_MA0697.3 7 bp overlap
Motif ES_0h ES_0h-Zic3_MA0697.3 7 bp overlap